data_5S9O
#
_model_server_result.job_id            Ou7gVLsKZcm7uGbAPXzMUg 
_model_server_result.datetime_utc      '2024-11-09 23:21:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5s9o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5S9O 
#
_exptl.entry_id    5S9O 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5S9O 
_cell.length_a            134.27 
_cell.length_b            134.27 
_cell.length_c            134.27 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5S9O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5S9O 
_atom_sites.fract_transf_matrix[1][1]    0.007448 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007448 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007448 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YW1 A 1 301 301 YW1 LG1 . 
D 3 EDO A 1 302 1 EDO EDO . 
E 3 EDO A 1 303 3 EDO EDO . 
F 3 EDO A 1 304 7 EDO EDO . 
G 3 EDO A 1 305 9 EDO EDO . 
H 3 EDO A 1 306 10 EDO EDO . 
I 3 EDO A 1 307 11 EDO EDO . 
J 2 YW1 B 1 301 301 YW1 LG1 . 
K 3 EDO B 1 302 2 EDO EDO . 
L 3 EDO B 1 303 4 EDO EDO . 
M 3 EDO B 1 304 5 EDO EDO . 
N 4 HOH A 1 401 18 HOH HOH . 
N 4 HOH A 2 402 91 HOH HOH . 
N 4 HOH A 3 403 39 HOH HOH . 
N 4 HOH A 4 404 7 HOH HOH . 
N 4 HOH A 5 405 13 HOH HOH . 
N 4 HOH A 6 406 35 HOH HOH . 
N 4 HOH A 7 407 48 HOH HOH . 
N 4 HOH A 8 408 78 HOH HOH . 
N 4 HOH A 9 409 14 HOH HOH . 
N 4 HOH A 10 410 92 HOH HOH . 
N 4 HOH A 11 411 11 HOH HOH . 
N 4 HOH A 12 412 27 HOH HOH . 
N 4 HOH A 13 413 8 HOH HOH . 
N 4 HOH A 14 414 61 HOH HOH . 
N 4 HOH A 15 415 45 HOH HOH . 
N 4 HOH A 16 416 50 HOH HOH . 
N 4 HOH A 17 417 64 HOH HOH . 
N 4 HOH A 18 418 6 HOH HOH . 
N 4 HOH A 19 419 54 HOH HOH . 
N 4 HOH A 20 420 69 HOH HOH . 
N 4 HOH A 21 421 44 HOH HOH . 
N 4 HOH A 22 422 76 HOH HOH . 
N 4 HOH A 23 423 38 HOH HOH . 
N 4 HOH A 24 424 26 HOH HOH . 
N 4 HOH A 25 425 53 HOH HOH . 
N 4 HOH A 26 426 10 HOH HOH . 
N 4 HOH A 27 427 30 HOH HOH . 
N 4 HOH A 28 428 34 HOH HOH . 
N 4 HOH A 29 429 2 HOH HOH . 
N 4 HOH A 30 430 74 HOH HOH . 
N 4 HOH A 31 431 85 HOH HOH . 
N 4 HOH A 32 432 52 HOH HOH . 
N 4 HOH A 33 433 36 HOH HOH . 
N 4 HOH A 34 434 9 HOH HOH . 
N 4 HOH A 35 435 67 HOH HOH . 
N 4 HOH A 36 436 47 HOH HOH . 
N 4 HOH A 37 437 68 HOH HOH . 
N 4 HOH A 38 438 32 HOH HOH . 
N 4 HOH A 39 439 31 HOH HOH . 
N 4 HOH A 40 440 90 HOH HOH . 
N 4 HOH A 41 441 55 HOH HOH . 
N 4 HOH A 42 442 46 HOH HOH . 
N 4 HOH A 43 443 94 HOH HOH . 
N 4 HOH A 44 444 89 HOH HOH . 
N 4 HOH A 45 445 25 HOH HOH . 
N 4 HOH A 46 446 49 HOH HOH . 
N 4 HOH A 47 447 79 HOH HOH . 
N 4 HOH A 48 448 80 HOH HOH . 
N 4 HOH A 49 449 93 HOH HOH . 
N 4 HOH A 50 450 77 HOH HOH . 
N 4 HOH A 51 451 66 HOH HOH . 
N 4 HOH A 52 452 62 HOH HOH . 
N 4 HOH A 53 453 83 HOH HOH . 
O 4 HOH B 1 401 15 HOH HOH . 
O 4 HOH B 2 402 40 HOH HOH . 
O 4 HOH B 3 403 65 HOH HOH . 
O 4 HOH B 4 404 5 HOH HOH . 
O 4 HOH B 5 405 29 HOH HOH . 
O 4 HOH B 6 406 28 HOH HOH . 
O 4 HOH B 7 407 1 HOH HOH . 
O 4 HOH B 8 408 17 HOH HOH . 
O 4 HOH B 9 409 21 HOH HOH . 
O 4 HOH B 10 410 82 HOH HOH . 
O 4 HOH B 11 411 57 HOH HOH . 
O 4 HOH B 12 412 16 HOH HOH . 
O 4 HOH B 13 413 41 HOH HOH . 
O 4 HOH B 14 414 4 HOH HOH . 
O 4 HOH B 15 415 12 HOH HOH . 
O 4 HOH B 16 416 33 HOH HOH . 
O 4 HOH B 17 417 23 HOH HOH . 
O 4 HOH B 18 418 58 HOH HOH . 
O 4 HOH B 19 419 71 HOH HOH . 
O 4 HOH B 20 420 24 HOH HOH . 
O 4 HOH B 21 421 51 HOH HOH . 
O 4 HOH B 22 422 43 HOH HOH . 
O 4 HOH B 23 423 59 HOH HOH . 
O 4 HOH B 24 424 75 HOH HOH . 
O 4 HOH B 25 425 70 HOH HOH . 
O 4 HOH B 26 426 56 HOH HOH . 
O 4 HOH B 27 427 42 HOH HOH . 
O 4 HOH B 28 428 95 HOH HOH . 
O 4 HOH B 29 429 20 HOH HOH . 
O 4 HOH B 30 430 19 HOH HOH . 
O 4 HOH B 31 431 37 HOH HOH . 
O 4 HOH B 32 432 3 HOH HOH . 
O 4 HOH B 33 433 72 HOH HOH . 
O 4 HOH B 34 434 22 HOH HOH . 
O 4 HOH B 35 435 60 HOH HOH . 
O 4 HOH B 36 436 88 HOH HOH . 
O 4 HOH B 37 437 73 HOH HOH . 
O 4 HOH B 38 438 63 HOH HOH . 
O 4 HOH B 39 439 87 HOH HOH . 
O 4 HOH B 40 440 86 HOH HOH . 
O 4 HOH B 41 441 81 HOH HOH . 
O 4 HOH B 42 442 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 160.402 82.846 33.326 1 40.74 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . D 3 159.948 83.73 34.342 1 38.74 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . D 3 160.094 81.387 33.697 1 44.04 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . D 3 158.714 81.247 34.052 1 47.76 ? O2 EDO 302 A 1 
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_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
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