data_5S9P
#
_model_server_result.job_id            YfNXcF9dF8fkLddZws831A 
_model_server_result.datetime_utc      '2024-10-19 03:36:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5s9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    5S9P 
#
_exptl.entry_id    5S9P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         104.2 
_cell.angle_beta          90.32 
_cell.angle_gamma         98.47 
_cell.entry_id            5S9P 
_cell.length_a            42.131 
_cell.length_b            58.063 
_cell.length_c            59.586 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5S9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,K 1 1 
B,F,L 2 1 
C,G,H,M 3 1 
D,I,J,N 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5S9P 
_atom_sites.fract_transf_matrix[1][1]    0.023735 
_atom_sites.fract_transf_matrix[1][2]    0.003535 
_atom_sites.fract_transf_matrix[1][3]    0.001045 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017413 
_atom_sites.fract_transf_matrix[2][3]    0.004474 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 YW4 A 1 301 301 YW4 LG1 . 
F 2 YW4 B 1 301 301 YW4 LG1 . 
G 2 YW4 D 1 301 301 YW4 LG1 . 
H 3 EDO D 1 302 1 EDO EDO . 
I 2 YW4 E 1 301 301 YW4 LG1 . 
J 3 EDO E 1 302 2 EDO EDO . 
K 4 HOH A 1 401 93 HOH HOH . 
K 4 HOH A 2 402 1 HOH HOH . 
K 4 HOH A 3 403 138 HOH HOH . 
K 4 HOH A 4 404 29 HOH HOH . 
K 4 HOH A 5 405 32 HOH HOH . 
K 4 HOH A 6 406 107 HOH HOH . 
K 4 HOH A 7 407 78 HOH HOH . 
K 4 HOH A 8 408 4 HOH HOH . 
K 4 HOH A 9 409 37 HOH HOH . 
K 4 HOH A 10 410 5 HOH HOH . 
K 4 HOH A 11 411 49 HOH HOH . 
K 4 HOH A 12 412 125 HOH HOH . 
K 4 HOH A 13 413 52 HOH HOH . 
K 4 HOH A 14 414 35 HOH HOH . 
K 4 HOH A 15 415 109 HOH HOH . 
K 4 HOH A 16 416 70 HOH HOH . 
K 4 HOH A 17 417 34 HOH HOH . 
K 4 HOH A 18 418 24 HOH HOH . 
K 4 HOH A 19 419 74 HOH HOH . 
K 4 HOH A 20 420 79 HOH HOH . 
K 4 HOH A 21 421 27 HOH HOH . 
K 4 HOH A 22 422 88 HOH HOH . 
K 4 HOH A 23 423 66 HOH HOH . 
K 4 HOH A 24 424 119 HOH HOH . 
K 4 HOH A 25 425 2 HOH HOH . 
K 4 HOH A 26 426 38 HOH HOH . 
K 4 HOH A 27 427 47 HOH HOH . 
K 4 HOH A 28 428 3 HOH HOH . 
K 4 HOH A 29 429 116 HOH HOH . 
K 4 HOH A 30 430 127 HOH HOH . 
K 4 HOH A 31 431 131 HOH HOH . 
K 4 HOH A 32 432 51 HOH HOH . 
K 4 HOH A 33 433 84 HOH HOH . 
K 4 HOH A 34 434 60 HOH HOH . 
K 4 HOH A 35 435 55 HOH HOH . 
K 4 HOH A 36 436 118 HOH HOH . 
L 4 HOH B 1 401 6 HOH HOH . 
L 4 HOH B 2 402 128 HOH HOH . 
L 4 HOH B 3 403 114 HOH HOH . 
L 4 HOH B 4 404 89 HOH HOH . 
L 4 HOH B 5 405 56 HOH HOH . 
L 4 HOH B 6 406 121 HOH HOH . 
L 4 HOH B 7 407 123 HOH HOH . 
L 4 HOH B 8 408 58 HOH HOH . 
L 4 HOH B 9 409 92 HOH HOH . 
L 4 HOH B 10 410 124 HOH HOH . 
L 4 HOH B 11 411 54 HOH HOH . 
L 4 HOH B 12 412 106 HOH HOH . 
L 4 HOH B 13 413 115 HOH HOH . 
L 4 HOH B 14 414 23 HOH HOH . 
L 4 HOH B 15 415 96 HOH HOH . 
L 4 HOH B 16 416 8 HOH HOH . 
L 4 HOH B 17 417 59 HOH HOH . 
L 4 HOH B 18 418 45 HOH HOH . 
L 4 HOH B 19 419 72 HOH HOH . 
L 4 HOH B 20 420 86 HOH HOH . 
L 4 HOH B 21 421 9 HOH HOH . 
L 4 HOH B 22 422 10 HOH HOH . 
L 4 HOH B 23 423 117 HOH HOH . 
L 4 HOH B 24 424 69 HOH HOH . 
L 4 HOH B 25 425 81 HOH HOH . 
L 4 HOH B 26 426 111 HOH HOH . 
L 4 HOH B 27 427 99 HOH HOH . 
L 4 HOH B 28 428 7 HOH HOH . 
L 4 HOH B 29 429 122 HOH HOH . 
L 4 HOH B 30 430 139 HOH HOH . 
L 4 HOH B 31 431 57 HOH HOH . 
L 4 HOH B 32 432 98 HOH HOH . 
L 4 HOH B 33 433 129 HOH HOH . 
L 4 HOH B 34 434 112 HOH HOH . 
L 4 HOH B 35 435 95 HOH HOH . 
M 4 HOH D 1 401 43 HOH HOH . 
M 4 HOH D 2 402 11 HOH HOH . 
M 4 HOH D 3 403 108 HOH HOH . 
M 4 HOH D 4 404 73 HOH HOH . 
M 4 HOH D 5 405 13 HOH HOH . 
M 4 HOH D 6 406 14 HOH HOH . 
M 4 HOH D 7 407 46 HOH HOH . 
M 4 HOH D 8 408 67 HOH HOH . 
M 4 HOH D 9 409 97 HOH HOH . 
M 4 HOH D 10 410 68 HOH HOH . 
M 4 HOH D 11 411 110 HOH HOH . 
M 4 HOH D 12 412 12 HOH HOH . 
M 4 HOH D 13 413 26 HOH HOH . 
M 4 HOH D 14 414 101 HOH HOH . 
M 4 HOH D 15 415 28 HOH HOH . 
M 4 HOH D 16 416 41 HOH HOH . 
M 4 HOH D 17 417 25 HOH HOH . 
M 4 HOH D 18 418 80 HOH HOH . 
M 4 HOH D 19 419 75 HOH HOH . 
M 4 HOH D 20 420 15 HOH HOH . 
M 4 HOH D 21 421 33 HOH HOH . 
M 4 HOH D 22 422 87 HOH HOH . 
M 4 HOH D 23 423 120 HOH HOH . 
M 4 HOH D 24 424 141 HOH HOH . 
M 4 HOH D 25 425 31 HOH HOH . 
M 4 HOH D 26 426 133 HOH HOH . 
M 4 HOH D 27 427 132 HOH HOH . 
M 4 HOH D 28 428 42 HOH HOH . 
M 4 HOH D 29 429 126 HOH HOH . 
M 4 HOH D 30 430 134 HOH HOH . 
M 4 HOH D 31 431 103 HOH HOH . 
M 4 HOH D 32 432 62 HOH HOH . 
M 4 HOH D 33 433 130 HOH HOH . 
M 4 HOH D 34 434 90 HOH HOH . 
N 4 HOH E 1 401 53 HOH HOH . 
N 4 HOH E 2 402 16 HOH HOH . 
N 4 HOH E 3 403 82 HOH HOH . 
N 4 HOH E 4 404 30 HOH HOH . 
N 4 HOH E 5 405 137 HOH HOH . 
N 4 HOH E 6 406 39 HOH HOH . 
N 4 HOH E 7 407 102 HOH HOH . 
N 4 HOH E 8 408 18 HOH HOH . 
N 4 HOH E 9 409 91 HOH HOH . 
N 4 HOH E 10 410 140 HOH HOH . 
N 4 HOH E 11 411 63 HOH HOH . 
N 4 HOH E 12 412 71 HOH HOH . 
N 4 HOH E 13 413 19 HOH HOH . 
N 4 HOH E 14 414 22 HOH HOH . 
N 4 HOH E 15 415 77 HOH HOH . 
N 4 HOH E 16 416 21 HOH HOH . 
N 4 HOH E 17 417 17 HOH HOH . 
N 4 HOH E 18 418 105 HOH HOH . 
N 4 HOH E 19 419 104 HOH HOH . 
N 4 HOH E 20 420 76 HOH HOH . 
N 4 HOH E 21 421 136 HOH HOH . 
N 4 HOH E 22 422 20 HOH HOH . 
N 4 HOH E 23 423 36 HOH HOH . 
N 4 HOH E 24 424 94 HOH HOH . 
N 4 HOH E 25 425 113 HOH HOH . 
N 4 HOH E 26 426 135 HOH HOH . 
N 4 HOH E 27 427 48 HOH HOH . 
N 4 HOH E 28 428 100 HOH HOH . 
N 4 HOH E 29 429 61 HOH HOH . 
N 4 HOH E 30 430 85 HOH HOH . 
N 4 HOH E 31 431 83 HOH HOH . 
N 4 HOH E 32 432 40 HOH HOH . 
N 4 HOH E 33 433 65 HOH HOH . 
N 4 HOH E 34 434 64 HOH HOH . 
N 4 HOH E 35 435 44 HOH HOH . 
N 4 HOH E 36 436 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 3 -6.768 4.052 17.398 1 23.6 ? C1 EDO 302 D 1 
HETATM 2 O O1 EDO . . . H 3 -6.202 3.467 18.545 1 19.68 ? O1 EDO 302 D 1 
HETATM 3 C C2 EDO . . . H 3 -5.657 4.591 16.47 1 23.94 ? C2 EDO 302 D 1 
HETATM 4 O O2 EDO . . . H 3 -4.976 5.641 17.134 1 25.95 ? O2 EDO 302 D 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#