data_5S9Q # _model_server_result.job_id 3a0EGnGlG1OhsuTgQHX51w _model_server_result.datetime_utc '2024-12-23 16:17:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5s9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 5S9Q # _exptl.entry_id 5S9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 66.2 _cell.angle_beta 81.91 _cell.angle_gamma 89.74 _cell.entry_id 5S9Q _cell.length_a 42.12 _cell.length_b 59.77 _cell.length_c 63.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5S9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,N 2 1 C,H,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5S9Q _atom_sites.fract_transf_matrix[1][1] 0.023742 _atom_sites.fract_transf_matrix[1][2] -0.000108 _atom_sites.fract_transf_matrix[1][3] -0.003646 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016731 _atom_sites.fract_transf_matrix[2][3] -0.007454 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 YW7 A 1 301 301 YW7 LG1 . F 3 EDO A 1 302 2 EDO EDO . G 2 YW7 B 1 301 301 YW7 LG1 . H 2 YW7 D 1 301 301 YW7 LG1 . I 3 EDO D 1 302 3 EDO EDO . J 3 EDO D 1 303 4 EDO EDO . K 2 YW7 E 1 301 301 YW7 LG1 . L 3 EDO E 1 302 1 EDO EDO . M 4 HOH A 1 401 188 HOH HOH . M 4 HOH A 2 402 101 HOH HOH . M 4 HOH A 3 403 206 HOH HOH . M 4 HOH A 4 404 254 HOH HOH . M 4 HOH A 5 405 80 HOH HOH . M 4 HOH A 6 406 209 HOH HOH . M 4 HOH A 7 407 217 HOH HOH . M 4 HOH A 8 408 71 HOH HOH . M 4 HOH A 9 409 113 HOH HOH . M 4 HOH A 10 410 1 HOH HOH . M 4 HOH A 11 411 3 HOH HOH . M 4 HOH A 12 412 290 HOH HOH . M 4 HOH A 13 413 72 HOH HOH . M 4 HOH A 14 414 88 HOH HOH . M 4 HOH A 15 415 125 HOH HOH . M 4 HOH A 16 416 194 HOH HOH . M 4 HOH A 17 417 67 HOH HOH . M 4 HOH A 18 418 38 HOH HOH . M 4 HOH A 19 419 184 HOH HOH . M 4 HOH A 20 420 4 HOH HOH . M 4 HOH A 21 421 279 HOH HOH . M 4 HOH A 22 422 44 HOH HOH . M 4 HOH A 23 423 150 HOH HOH . M 4 HOH A 24 424 26 HOH HOH . M 4 HOH A 25 425 2 HOH HOH . M 4 HOH A 26 426 276 HOH HOH . M 4 HOH A 27 427 5 HOH HOH . M 4 HOH A 28 428 170 HOH HOH . M 4 HOH A 29 429 86 HOH HOH . M 4 HOH A 30 430 200 HOH HOH . M 4 HOH A 31 431 167 HOH HOH . M 4 HOH A 32 432 51 HOH HOH . M 4 HOH A 33 433 129 HOH HOH . M 4 HOH A 34 434 185 HOH HOH . M 4 HOH A 35 435 69 HOH HOH . M 4 HOH A 36 436 97 HOH HOH . M 4 HOH A 37 437 48 HOH HOH . M 4 HOH A 38 438 180 HOH HOH . M 4 HOH A 39 439 177 HOH HOH . M 4 HOH A 40 440 117 HOH HOH . M 4 HOH A 41 441 197 HOH HOH . M 4 HOH A 42 442 192 HOH HOH . M 4 HOH A 43 443 123 HOH HOH . M 4 HOH A 44 444 268 HOH HOH . M 4 HOH A 45 445 74 HOH HOH . M 4 HOH A 46 446 223 HOH HOH . M 4 HOH A 47 447 65 HOH HOH . M 4 HOH A 48 448 45 HOH HOH . M 4 HOH A 49 449 252 HOH HOH . M 4 HOH A 50 450 231 HOH HOH . M 4 HOH A 51 451 70 HOH HOH . M 4 HOH A 52 452 58 HOH HOH . M 4 HOH A 53 453 253 HOH HOH . M 4 HOH A 54 454 96 HOH HOH . M 4 HOH A 55 455 130 HOH HOH . M 4 HOH A 56 456 37 HOH HOH . M 4 HOH A 57 457 43 HOH HOH . M 4 HOH A 58 458 79 HOH HOH . M 4 HOH A 59 459 240 HOH HOH . M 4 HOH A 60 460 131 HOH HOH . M 4 HOH A 61 461 229 HOH HOH . M 4 HOH A 62 462 225 HOH HOH . M 4 HOH A 63 463 189 HOH HOH . M 4 HOH A 64 464 212 HOH HOH . N 4 HOH B 1 401 145 HOH HOH . N 4 HOH B 2 402 35 HOH HOH . N 4 HOH B 3 403 82 HOH HOH . N 4 HOH B 4 404 247 HOH HOH . N 4 HOH B 5 405 281 HOH HOH . N 4 HOH B 6 406 6 HOH HOH . N 4 HOH B 7 407 272 HOH HOH . N 4 HOH B 8 408 103 HOH HOH . N 4 HOH B 9 409 136 HOH HOH . N 4 HOH B 10 410 172 HOH HOH . N 4 HOH B 11 411 266 HOH HOH . N 4 HOH B 12 412 7 HOH HOH . N 4 HOH B 13 413 278 HOH HOH . N 4 HOH B 14 414 243 HOH HOH . N 4 HOH B 15 415 120 HOH HOH . N 4 HOH B 16 416 267 HOH HOH . N 4 HOH B 17 417 232 HOH HOH . N 4 HOH B 18 418 144 HOH HOH . N 4 HOH B 19 419 122 HOH HOH . N 4 HOH B 20 420 239 HOH HOH . N 4 HOH B 21 421 94 HOH HOH . N 4 HOH B 22 422 164 HOH HOH . N 4 HOH B 23 423 10 HOH HOH . N 4 HOH B 24 424 269 HOH HOH . N 4 HOH B 25 425 259 HOH HOH . N 4 HOH B 26 426 9 HOH HOH . N 4 HOH B 27 427 40 HOH HOH . N 4 HOH B 28 428 257 HOH HOH . N 4 HOH B 29 429 134 HOH HOH . N 4 HOH B 30 430 280 HOH HOH . N 4 HOH B 31 431 133 HOH HOH . N 4 HOH B 32 432 30 HOH HOH . N 4 HOH B 33 433 265 HOH HOH . N 4 HOH B 34 434 60 HOH HOH . N 4 HOH B 35 435 158 HOH HOH . N 4 HOH B 36 436 220 HOH HOH . N 4 HOH B 37 437 89 HOH HOH . N 4 HOH B 38 438 92 HOH HOH . N 4 HOH B 39 439 119 HOH HOH . N 4 HOH B 40 440 77 HOH HOH . N 4 HOH B 41 441 175 HOH HOH . N 4 HOH B 42 442 21 HOH HOH . N 4 HOH B 43 443 62 HOH HOH . N 4 HOH B 44 444 199 HOH HOH . N 4 HOH B 45 445 8 HOH HOH . N 4 HOH B 46 446 126 HOH HOH . N 4 HOH B 47 447 166 HOH HOH . N 4 HOH B 48 448 55 HOH HOH . N 4 HOH B 49 449 76 HOH HOH . N 4 HOH B 50 450 219 HOH HOH . N 4 HOH B 51 451 173 HOH HOH . N 4 HOH B 52 452 47 HOH HOH . N 4 HOH B 53 453 105 HOH HOH . N 4 HOH B 54 454 183 HOH HOH . N 4 HOH B 55 455 109 HOH HOH . N 4 HOH B 56 456 87 HOH HOH . N 4 HOH B 57 457 84 HOH HOH . N 4 HOH B 58 458 176 HOH HOH . N 4 HOH B 59 459 258 HOH HOH . N 4 HOH B 60 460 61 HOH HOH . N 4 HOH B 61 461 193 HOH HOH . N 4 HOH B 62 462 210 HOH HOH . N 4 HOH B 63 463 138 HOH HOH . N 4 HOH B 64 464 124 HOH HOH . N 4 HOH B 65 465 57 HOH HOH . N 4 HOH B 66 466 214 HOH HOH . N 4 HOH B 67 467 211 HOH HOH . N 4 HOH B 68 468 83 HOH HOH . N 4 HOH B 69 469 33 HOH HOH . N 4 HOH B 70 470 274 HOH HOH . N 4 HOH B 71 471 128 HOH HOH . N 4 HOH B 72 472 244 HOH HOH . N 4 HOH B 73 473 287 HOH HOH . N 4 HOH B 74 474 104 HOH HOH . N 4 HOH B 75 475 174 HOH HOH . N 4 HOH B 76 476 139 HOH HOH . N 4 HOH B 77 477 249 HOH HOH . N 4 HOH B 78 478 213 HOH HOH . N 4 HOH B 79 479 207 HOH HOH . N 4 HOH B 80 480 285 HOH HOH . N 4 HOH B 81 481 224 HOH HOH . N 4 HOH B 82 482 251 HOH HOH . O 4 HOH D 1 401 11 HOH HOH . O 4 HOH D 2 402 148 HOH HOH . O 4 HOH D 3 403 32 HOH HOH . O 4 HOH D 4 404 245 HOH HOH . O 4 HOH D 5 405 160 HOH HOH . O 4 HOH D 6 406 277 HOH HOH . O 4 HOH D 7 407 50 HOH HOH . O 4 HOH D 8 408 191 HOH HOH . O 4 HOH D 9 409 49 HOH HOH . O 4 HOH D 10 410 203 HOH HOH . O 4 HOH D 11 411 100 HOH HOH . O 4 HOH D 12 412 262 HOH HOH . O 4 HOH D 13 413 31 HOH HOH . O 4 HOH D 14 414 12 HOH HOH . O 4 HOH D 15 415 156 HOH HOH . O 4 HOH D 16 416 205 HOH HOH . O 4 HOH D 17 417 107 HOH HOH . O 4 HOH D 18 418 64 HOH HOH . O 4 HOH D 19 419 216 HOH HOH . O 4 HOH D 20 420 116 HOH HOH . O 4 HOH D 21 421 42 HOH HOH . O 4 HOH D 22 422 13 HOH HOH . O 4 HOH D 23 423 102 HOH HOH . O 4 HOH D 24 424 23 HOH HOH . O 4 HOH D 25 425 78 HOH HOH . O 4 HOH D 26 426 221 HOH HOH . O 4 HOH D 27 427 14 HOH HOH . O 4 HOH D 28 428 91 HOH HOH . O 4 HOH D 29 429 140 HOH HOH . O 4 HOH D 30 430 186 HOH HOH . O 4 HOH D 31 431 27 HOH HOH . O 4 HOH D 32 432 66 HOH HOH . O 4 HOH D 33 433 161 HOH HOH . O 4 HOH D 34 434 241 HOH HOH . O 4 HOH D 35 435 143 HOH HOH . O 4 HOH D 36 436 114 HOH HOH . O 4 HOH D 37 437 195 HOH HOH . O 4 HOH D 38 438 149 HOH HOH . O 4 HOH D 39 439 165 HOH HOH . O 4 HOH D 40 440 141 HOH HOH . O 4 HOH D 41 441 137 HOH HOH . O 4 HOH D 42 442 15 HOH HOH . O 4 HOH D 43 443 73 HOH HOH . O 4 HOH D 44 444 151 HOH HOH . O 4 HOH D 45 445 98 HOH HOH . O 4 HOH D 46 446 234 HOH HOH . O 4 HOH D 47 447 230 HOH HOH . O 4 HOH D 48 448 218 HOH HOH . O 4 HOH D 49 449 115 HOH HOH . O 4 HOH D 50 450 271 HOH HOH . O 4 HOH D 51 451 52 HOH HOH . O 4 HOH D 52 452 228 HOH HOH . O 4 HOH D 53 453 157 HOH HOH . O 4 HOH D 54 454 142 HOH HOH . O 4 HOH D 55 455 59 HOH HOH . O 4 HOH D 56 456 39 HOH HOH . O 4 HOH D 57 457 118 HOH HOH . O 4 HOH D 58 458 153 HOH HOH . O 4 HOH D 59 459 171 HOH HOH . O 4 HOH D 60 460 264 HOH HOH . O 4 HOH D 61 461 227 HOH HOH . O 4 HOH D 62 462 260 HOH HOH . O 4 HOH D 63 463 132 HOH HOH . O 4 HOH D 64 464 152 HOH HOH . O 4 HOH D 65 465 208 HOH HOH . O 4 HOH D 66 466 135 HOH HOH . O 4 HOH D 67 467 283 HOH HOH . O 4 HOH D 68 468 286 HOH HOH . O 4 HOH D 69 469 147 HOH HOH . O 4 HOH D 70 470 169 HOH HOH . P 4 HOH E 1 401 246 HOH HOH . P 4 HOH E 2 402 237 HOH HOH . P 4 HOH E 3 403 16 HOH HOH . P 4 HOH E 4 404 154 HOH HOH . P 4 HOH E 5 405 284 HOH HOH . P 4 HOH E 6 406 110 HOH HOH . P 4 HOH E 7 407 63 HOH HOH . P 4 HOH E 8 408 263 HOH HOH . P 4 HOH E 9 409 196 HOH HOH . P 4 HOH E 10 410 17 HOH HOH . P 4 HOH E 11 411 22 HOH HOH . P 4 HOH E 12 412 95 HOH HOH . P 4 HOH E 13 413 250 HOH HOH . P 4 HOH E 14 414 182 HOH HOH . P 4 HOH E 15 415 111 HOH HOH . P 4 HOH E 16 416 238 HOH HOH . P 4 HOH E 17 417 34 HOH HOH . P 4 HOH E 18 418 112 HOH HOH . P 4 HOH E 19 419 204 HOH HOH . P 4 HOH E 20 420 54 HOH HOH . P 4 HOH E 21 421 19 HOH HOH . P 4 HOH E 22 422 187 HOH HOH . P 4 HOH E 23 423 36 HOH HOH . P 4 HOH E 24 424 68 HOH HOH . P 4 HOH E 25 425 41 HOH HOH . P 4 HOH E 26 426 20 HOH HOH . P 4 HOH E 27 427 242 HOH HOH . P 4 HOH E 28 428 190 HOH HOH . P 4 HOH E 29 429 93 HOH HOH . P 4 HOH E 30 430 289 HOH HOH . P 4 HOH E 31 431 121 HOH HOH . P 4 HOH E 32 432 273 HOH HOH . P 4 HOH E 33 433 81 HOH HOH . P 4 HOH E 34 434 99 HOH HOH . P 4 HOH E 35 435 168 HOH HOH . P 4 HOH E 36 436 28 HOH HOH . P 4 HOH E 37 437 75 HOH HOH . P 4 HOH E 38 438 146 HOH HOH . P 4 HOH E 39 439 18 HOH HOH . P 4 HOH E 40 440 202 HOH HOH . P 4 HOH E 41 441 178 HOH HOH . P 4 HOH E 42 442 236 HOH HOH . P 4 HOH E 43 443 288 HOH HOH . P 4 HOH E 44 444 29 HOH HOH . P 4 HOH E 45 445 155 HOH HOH . P 4 HOH E 46 446 179 HOH HOH . P 4 HOH E 47 447 24 HOH HOH . P 4 HOH E 48 448 181 HOH HOH . P 4 HOH E 49 449 201 HOH HOH . P 4 HOH E 50 450 46 HOH HOH . P 4 HOH E 51 451 235 HOH HOH . P 4 HOH E 52 452 226 HOH HOH . P 4 HOH E 53 453 90 HOH HOH . P 4 HOH E 54 454 282 HOH HOH . P 4 HOH E 55 455 108 HOH HOH . P 4 HOH E 56 456 222 HOH HOH . P 4 HOH E 57 457 255 HOH HOH . P 4 HOH E 58 458 85 HOH HOH . P 4 HOH E 59 459 261 HOH HOH . P 4 HOH E 60 460 25 HOH HOH . P 4 HOH E 61 461 248 HOH HOH . P 4 HOH E 62 462 56 HOH HOH . P 4 HOH E 63 463 275 HOH HOH . P 4 HOH E 64 464 106 HOH HOH . P 4 HOH E 65 465 233 HOH HOH . P 4 HOH E 66 466 198 HOH HOH . P 4 HOH E 67 467 53 HOH HOH . P 4 HOH E 68 468 163 HOH HOH . P 4 HOH E 69 469 256 HOH HOH . P 4 HOH E 70 470 162 HOH HOH . P 4 HOH E 71 471 159 HOH HOH . P 4 HOH E 72 472 215 HOH HOH . P 4 HOH E 73 473 270 HOH HOH . P 4 HOH E 74 474 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 -40.148 -27.25 -46.836 1 22.98 ? C1 EDO 302 E 1 HETATM 2 O O1 EDO . . . L 3 -39.294 -27.569 -45.739 1 24.55 ? O1 EDO 302 E 1 HETATM 3 C C2 EDO . . . L 3 -41.142 -28.4 -47.041 1 23.92 ? C2 EDO 302 E 1 HETATM 4 O O2 EDO . . . L 3 -40.405 -29.578 -47.305 1 23.92 ? O2 EDO 302 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #