data_5SB0 # _model_server_result.job_id t0widojiqDEtNUH3SQfs1w _model_server_result.datetime_utc '2025-01-05 03:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5SB0 # _exptl.entry_id 5SB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[(1R,2S)-2-{2-[(pyridin-3-yl)oxy]ethyl}cyclohexyl]methyl}-3-(trifluoromethoxy)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SB0 _cell.length_a 62.056 _cell.length_b 76.661 _cell.length_c 77.783 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 99 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 691 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 106 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 698 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.041 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H25 F3 N2 O3' _chem_comp.formula_weight 422.441 _chem_comp.id 1IZ _chem_comp.mon_nstd_flag . _chem_comp.name N-{[(1R,2S)-2-{2-[(pyridin-3-yl)oxy]ethyl}cyclohexyl]methyl}-3-(trifluoromethoxy)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C26 1IZ sing 1 n n C1 C4 1IZ sing 2 n n C2 C25 1IZ sing 3 n n C2 N3 1IZ sing 4 n n N3 C5 1IZ sing 5 n n C4 O8 1IZ sing 6 n n C5 C7 1IZ sing 7 n n C5 O6 1IZ doub 8 n n C7 C15 1IZ doub 9 n y C7 C19 1IZ sing 10 n y O8 C9 1IZ sing 11 n n C9 C10 1IZ doub 12 n y C9 C14 1IZ sing 13 n y C10 C11 1IZ sing 14 n y C11 C12 1IZ doub 15 n y C12 N13 1IZ sing 16 n y N13 C14 1IZ doub 17 n y C15 C16 1IZ sing 18 n y C16 C17 1IZ doub 19 n y C16 O20 1IZ sing 20 n n C17 C18 1IZ sing 21 n y C18 C19 1IZ doub 22 n y O20 C21 1IZ sing 23 n n C21 F22 1IZ sing 24 n n C21 F23 1IZ sing 25 n n C21 F24 1IZ sing 26 n n C25 C26 1IZ sing 27 n n C25 C30 1IZ sing 28 n n C26 C27 1IZ sing 29 n n C27 C28 1IZ sing 30 n n C28 C29 1IZ sing 31 n n C29 C30 1IZ sing 32 n n C10 H38 1IZ sing 33 n n C11 H39 1IZ sing 34 n n C15 H42 1IZ sing 35 n n C17 H43 1IZ sing 36 n n C18 H44 1IZ sing 37 n n C19 H45 1IZ sing 38 n n C25 H46 1IZ sing 39 n n C26 H47 1IZ sing 40 n n C27 H48 1IZ sing 41 n n C27 H49 1IZ sing 42 n n C28 H50 1IZ sing 43 n n C28 H51 1IZ sing 44 n n C1 H31 1IZ sing 45 n n C1 H32 1IZ sing 46 n n C2 H33 1IZ sing 47 n n C2 H34 1IZ sing 48 n n N3 H35 1IZ sing 49 n n C4 H37 1IZ sing 50 n n C4 H36 1IZ sing 51 n n C12 H40 1IZ sing 52 n n C14 H41 1IZ sing 53 n n C29 H53 1IZ sing 54 n n C29 H52 1IZ sing 55 n n C30 H55 1IZ sing 56 n n C30 H54 1IZ sing 57 n n # _atom_sites.entry_id 5SB0 _atom_sites.fract_transf_matrix[1][1] 0.016114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 1001 1 IOD IOD . C 3 1IZ A 1 1002 1 1IZ L0R . D 4 CL A 1 1003 1 CL CL . E 5 HOH A 1 1101 31 HOH HOH . E 5 HOH A 2 1102 69 HOH HOH . E 5 HOH A 3 1103 34 HOH HOH . E 5 HOH A 4 1104 52 HOH HOH . E 5 HOH A 5 1105 33 HOH HOH . E 5 HOH A 6 1106 100 HOH HOH . E 5 HOH A 7 1107 18 HOH HOH . E 5 HOH A 8 1108 36 HOH HOH . E 5 HOH A 9 1109 44 HOH HOH . E 5 HOH A 10 1110 78 HOH HOH . E 5 HOH A 11 1111 94 HOH HOH . E 5 HOH A 12 1112 65 HOH HOH . E 5 HOH A 13 1113 118 HOH HOH . E 5 HOH A 14 1114 101 HOH HOH . E 5 HOH A 15 1115 25 HOH HOH . E 5 HOH A 16 1116 62 HOH HOH . E 5 HOH A 17 1117 48 HOH HOH . E 5 HOH A 18 1118 71 HOH HOH . E 5 HOH A 19 1119 14 HOH HOH . E 5 HOH A 20 1120 4 HOH HOH . E 5 HOH A 21 1121 16 HOH HOH . E 5 HOH A 22 1122 20 HOH HOH . E 5 HOH A 23 1123 5 HOH HOH . E 5 HOH A 24 1124 37 HOH HOH . E 5 HOH A 25 1125 64 HOH HOH . E 5 HOH A 26 1126 53 HOH HOH . E 5 HOH A 27 1127 27 HOH HOH . E 5 HOH A 28 1128 1 HOH HOH . E 5 HOH A 29 1129 50 HOH HOH . E 5 HOH A 30 1130 112 HOH HOH . E 5 HOH A 31 1131 32 HOH HOH . E 5 HOH A 32 1132 55 HOH HOH . E 5 HOH A 33 1133 28 HOH HOH . E 5 HOH A 34 1134 74 HOH HOH . E 5 HOH A 35 1135 13 HOH HOH . E 5 HOH A 36 1136 6 HOH HOH . E 5 HOH A 37 1137 114 HOH HOH . E 5 HOH A 38 1138 70 HOH HOH . E 5 HOH A 39 1139 35 HOH HOH . E 5 HOH A 40 1140 84 HOH HOH . E 5 HOH A 41 1141 92 HOH HOH . E 5 HOH A 42 1142 58 HOH HOH . E 5 HOH A 43 1143 95 HOH HOH . E 5 HOH A 44 1144 9 HOH HOH . E 5 HOH A 45 1145 108 HOH HOH . E 5 HOH A 46 1146 49 HOH HOH . E 5 HOH A 47 1147 117 HOH HOH . E 5 HOH A 48 1148 60 HOH HOH . E 5 HOH A 49 1149 105 HOH HOH . E 5 HOH A 50 1150 61 HOH HOH . E 5 HOH A 51 1151 115 HOH HOH . E 5 HOH A 52 1152 46 HOH HOH . E 5 HOH A 53 1153 98 HOH HOH . E 5 HOH A 54 1154 21 HOH HOH . E 5 HOH A 55 1155 63 HOH HOH . E 5 HOH A 56 1156 15 HOH HOH . E 5 HOH A 57 1157 57 HOH HOH . E 5 HOH A 58 1158 3 HOH HOH . E 5 HOH A 59 1159 43 HOH HOH . E 5 HOH A 60 1160 86 HOH HOH . E 5 HOH A 61 1161 113 HOH HOH . E 5 HOH A 62 1162 40 HOH HOH . E 5 HOH A 63 1163 90 HOH HOH . E 5 HOH A 64 1164 80 HOH HOH . E 5 HOH A 65 1165 88 HOH HOH . E 5 HOH A 66 1166 23 HOH HOH . E 5 HOH A 67 1167 51 HOH HOH . E 5 HOH A 68 1168 116 HOH HOH . E 5 HOH A 69 1169 72 HOH HOH . E 5 HOH A 70 1170 79 HOH HOH . E 5 HOH A 71 1171 89 HOH HOH . E 5 HOH A 72 1172 59 HOH HOH . E 5 HOH A 73 1173 7 HOH HOH . E 5 HOH A 74 1174 42 HOH HOH . E 5 HOH A 75 1175 10 HOH HOH . E 5 HOH A 76 1176 83 HOH HOH . E 5 HOH A 77 1177 2 HOH HOH . E 5 HOH A 78 1178 19 HOH HOH . E 5 HOH A 79 1179 103 HOH HOH . E 5 HOH A 80 1180 107 HOH HOH . E 5 HOH A 81 1181 11 HOH HOH . E 5 HOH A 82 1182 8 HOH HOH . E 5 HOH A 83 1183 22 HOH HOH . E 5 HOH A 84 1184 77 HOH HOH . E 5 HOH A 85 1185 24 HOH HOH . E 5 HOH A 86 1186 97 HOH HOH . E 5 HOH A 87 1187 29 HOH HOH . E 5 HOH A 88 1188 56 HOH HOH . E 5 HOH A 89 1189 12 HOH HOH . E 5 HOH A 90 1190 102 HOH HOH . E 5 HOH A 91 1191 87 HOH HOH . E 5 HOH A 92 1192 68 HOH HOH . E 5 HOH A 93 1193 96 HOH HOH . E 5 HOH A 94 1194 26 HOH HOH . E 5 HOH A 95 1195 109 HOH HOH . E 5 HOH A 96 1196 45 HOH HOH . E 5 HOH A 97 1197 17 HOH HOH . E 5 HOH A 98 1198 75 HOH HOH . E 5 HOH A 99 1199 82 HOH HOH . E 5 HOH A 100 1200 91 HOH HOH . E 5 HOH A 101 1201 66 HOH HOH . E 5 HOH A 102 1202 76 HOH HOH . E 5 HOH A 103 1203 67 HOH HOH . E 5 HOH A 104 1204 93 HOH HOH . E 5 HOH A 105 1205 111 HOH HOH . E 5 HOH A 106 1206 38 HOH HOH . E 5 HOH A 107 1207 41 HOH HOH . E 5 HOH A 108 1208 119 HOH HOH . E 5 HOH A 109 1209 73 HOH HOH . E 5 HOH A 110 1210 99 HOH HOH . E 5 HOH A 111 1211 106 HOH HOH . E 5 HOH A 112 1212 104 HOH HOH . E 5 HOH A 113 1213 110 HOH HOH . E 5 HOH A 114 1214 81 HOH HOH . E 5 HOH A 115 1215 39 HOH HOH . E 5 HOH A 116 1216 30 HOH HOH . E 5 HOH A 117 1217 54 HOH HOH . E 5 HOH A 118 1218 85 HOH HOH . E 5 HOH A 119 1219 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 1IZ . . . C 3 17.47 0.539 0.332 1 41.86 ? C10 1IZ 1002 A 1 HETATM 2 C C11 1IZ . . . C 3 16.279 1.233 0.183 1 47.91 ? C11 1IZ 1002 A 1 HETATM 3 C C15 1IZ . . . C 3 25.601 -5.877 -2.663 1 34.5 ? C15 1IZ 1002 A 1 HETATM 4 C C16 1IZ . . . C 3 26.628 -6.781 -3.082 1 40.01 ? C16 1IZ 1002 A 1 HETATM 5 C C17 1IZ . . . C 3 27.604 -7.241 -2.186 1 41.52 ? C17 1IZ 1002 A 1 HETATM 6 C C18 1IZ . . . C 3 27.566 -6.788 -0.86 1 41.41 ? C18 1IZ 1002 A 1 HETATM 7 C C19 1IZ . . . C 3 26.562 -5.899 -0.428 1 37.66 ? C19 1IZ 1002 A 1 HETATM 8 C C21 1IZ . . . C 3 25.589 -7.934 -4.888 1 41.18 ? C21 1IZ 1002 A 1 HETATM 9 C C25 1IZ . . . C 3 23.637 -1.664 0.514 1 39.45 ? C25 1IZ 1002 A 1 HETATM 10 C C26 1IZ . . . C 3 22.359 -0.952 1.043 1 42.05 ? C26 1IZ 1002 A 1 HETATM 11 C C27 1IZ . . . C 3 22.46 0.566 0.797 1 42.22 ? C27 1IZ 1002 A 1 HETATM 12 C C28 1IZ . . . C 3 23.752 1.15 1.371 1 42.95 ? C28 1IZ 1002 A 1 HETATM 13 C C1 1IZ . . . C 3 21.115 -1.595 0.353 1 40.09 ? C1 1IZ 1002 A 1 HETATM 14 C C2 1IZ . . . C 3 23.576 -3.128 0.966 1 37.56 ? C2 1IZ 1002 A 1 HETATM 15 N N3 1IZ . . . C 3 24.632 -3.994 0.403 1 35.63 ? N3 1IZ 1002 A 1 HETATM 16 C C4 1IZ . . . C 3 19.748 -0.89 0.611 1 45.04 ? C4 1IZ 1002 A 1 HETATM 17 C C5 1IZ . . . C 3 24.48 -4.575 -0.845 1 36.18 ? C5 1IZ 1002 A 1 HETATM 18 O O6 1IZ . . . C 3 23.469 -4.381 -1.514 1 34.58 ? O6 1IZ 1002 A 1 HETATM 19 C C7 1IZ . . . C 3 25.588 -5.456 -1.322 1 35.87 ? C7 1IZ 1002 A 1 HETATM 20 O O8 1IZ . . . C 3 19.676 0.138 -0.367 1 43.13 ? O8 1IZ 1002 A 1 HETATM 21 C C9 1IZ . . . C 3 18.537 0.878 -0.53 1 44.02 ? C9 1IZ 1002 A 1 HETATM 22 C C12 1IZ . . . C 3 16.181 2.244 -0.81 1 47.19 ? C12 1IZ 1002 A 1 HETATM 23 N N13 1IZ . . . C 3 17.206 2.582 -1.63 1 44.84 ? N13 1IZ 1002 A 1 HETATM 24 C C14 1IZ . . . C 3 18.368 1.905 -1.489 1 40.01 ? C14 1IZ 1002 A 1 HETATM 25 O O20 1IZ . . . C 3 26.6 -7.139 -4.452 1 38.79 ? O20 1IZ 1002 A 1 HETATM 26 F F22 1IZ . . . C 3 24.39 -7.447 -4.711 1 42.88 ? F22 1IZ 1002 A 1 HETATM 27 F F23 1IZ . . . C 3 25.772 -8.188 -6.192 1 39.91 ? F23 1IZ 1002 A 1 HETATM 28 F F24 1IZ . . . C 3 25.615 -9.069 -4.214 1 48.9 ? F24 1IZ 1002 A 1 HETATM 29 C C29 1IZ . . . C 3 24.985 0.45 0.775 1 44.09 ? C29 1IZ 1002 A 1 HETATM 30 C C30 1IZ . . . C 3 24.921 -1.039 1.095 1 40.57 ? C30 1IZ 1002 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #