data_5SBK
#
_model_server_result.job_id            HjHPQH492p1WrrIljoR1FQ 
_model_server_result.datetime_utc      '2024-11-23 02:56:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sbk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5SBK 
#
_exptl.entry_id    5SBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.85 
_cell.angle_gamma         90 
_cell.entry_id            5SBK 
_cell.length_a            30.7 
_cell.length_b            81.45 
_cell.length_c            31.98 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 115 n n 
S C1 DMS sing 116 n n 
S C2 DMS sing 117 n n 
C1 H11 DMS sing 118 n n 
C1 H12 DMS sing 119 n n 
C1 H13 DMS sing 120 n n 
C2 H21 DMS sing 121 n n 
C2 H22 DMS sing 122 n n 
C2 H23 DMS sing 123 n n 
#
_atom_sites.entry_id                     5SBK 
_atom_sites.fract_transf_matrix[1][1]    0.032573 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.01721 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.035366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 89W A 1 201 201 89W LIG . 
C 3 DMS A 1 202 1 DMS DMS . 
D 3 DMS A 1 203 2 DMS DMS . 
E 4 EDO A 1 204 1 EDO EDO . 
F 4 EDO A 1 205 2 EDO EDO . 
G 5 HOH A 1 301 278 HOH HOH . 
G 5 HOH A 2 302 41 HOH HOH . 
G 5 HOH A 3 303 163 HOH HOH . 
G 5 HOH A 4 304 32 HOH HOH . 
G 5 HOH A 5 305 103 HOH HOH . 
G 5 HOH A 6 306 175 HOH HOH . 
G 5 HOH A 7 307 71 HOH HOH . 
G 5 HOH A 8 308 120 HOH HOH . 
G 5 HOH A 9 309 50 HOH HOH . 
G 5 HOH A 10 310 60 HOH HOH . 
G 5 HOH A 11 311 62 HOH HOH . 
G 5 HOH A 12 312 161 HOH HOH . 
G 5 HOH A 13 313 115 HOH HOH . 
G 5 HOH A 14 314 91 HOH HOH . 
G 5 HOH A 15 315 21 HOH HOH . 
G 5 HOH A 16 316 76 HOH HOH . 
G 5 HOH A 17 317 4 HOH HOH . 
G 5 HOH A 18 318 255 HOH HOH . 
G 5 HOH A 19 319 2 HOH HOH . 
G 5 HOH A 20 320 114 HOH HOH . 
G 5 HOH A 21 321 5 HOH HOH . 
G 5 HOH A 22 322 85 HOH HOH . 
G 5 HOH A 23 323 78 HOH HOH . 
G 5 HOH A 24 324 14 HOH HOH . 
G 5 HOH A 25 325 180 HOH HOH . 
G 5 HOH A 26 326 26 HOH HOH . 
G 5 HOH A 27 327 254 HOH HOH . 
G 5 HOH A 28 328 231 HOH HOH . 
G 5 HOH A 29 329 3 HOH HOH . 
G 5 HOH A 30 330 144 HOH HOH . 
G 5 HOH A 31 331 34 HOH HOH . 
G 5 HOH A 32 332 18 HOH HOH . 
G 5 HOH A 33 333 46 HOH HOH . 
G 5 HOH A 34 334 57 HOH HOH . 
G 5 HOH A 35 335 49 HOH HOH . 
G 5 HOH A 36 336 31 HOH HOH . 
G 5 HOH A 37 337 197 HOH HOH . 
G 5 HOH A 38 338 10 HOH HOH . 
G 5 HOH A 39 339 28 HOH HOH . 
G 5 HOH A 40 340 102 HOH HOH . 
G 5 HOH A 41 341 158 HOH HOH . 
G 5 HOH A 42 342 259 HOH HOH . 
G 5 HOH A 43 343 44 HOH HOH . 
G 5 HOH A 44 344 195 HOH HOH . 
G 5 HOH A 45 345 55 HOH HOH . 
G 5 HOH A 46 346 54 HOH HOH . 
G 5 HOH A 47 347 193 HOH HOH . 
G 5 HOH A 48 348 68 HOH HOH . 
G 5 HOH A 49 349 110 HOH HOH . 
G 5 HOH A 50 350 27 HOH HOH . 
G 5 HOH A 51 351 137 HOH HOH . 
G 5 HOH A 52 352 271 HOH HOH . 
G 5 HOH A 53 353 11 HOH HOH . 
G 5 HOH A 54 354 79 HOH HOH . 
G 5 HOH A 55 355 126 HOH HOH . 
G 5 HOH A 56 356 51 HOH HOH . 
G 5 HOH A 57 357 73 HOH HOH . 
G 5 HOH A 58 358 159 HOH HOH . 
G 5 HOH A 59 359 38 HOH HOH . 
G 5 HOH A 60 360 82 HOH HOH . 
G 5 HOH A 61 361 22 HOH HOH . 
G 5 HOH A 62 362 100 HOH HOH . 
G 5 HOH A 63 363 45 HOH HOH . 
G 5 HOH A 64 364 178 HOH HOH . 
G 5 HOH A 65 365 109 HOH HOH . 
G 5 HOH A 66 366 48 HOH HOH . 
G 5 HOH A 67 367 154 HOH HOH . 
G 5 HOH A 68 368 47 HOH HOH . 
G 5 HOH A 69 369 7 HOH HOH . 
G 5 HOH A 70 370 13 HOH HOH . 
G 5 HOH A 71 371 1 HOH HOH . 
G 5 HOH A 72 372 9 HOH HOH . 
G 5 HOH A 73 373 33 HOH HOH . 
G 5 HOH A 74 374 29 HOH HOH . 
G 5 HOH A 75 375 127 HOH HOH . 
G 5 HOH A 76 376 56 HOH HOH . 
G 5 HOH A 77 377 15 HOH HOH . 
G 5 HOH A 78 378 160 HOH HOH . 
G 5 HOH A 79 379 63 HOH HOH . 
G 5 HOH A 80 380 147 HOH HOH . 
G 5 HOH A 81 381 174 HOH HOH . 
G 5 HOH A 82 382 121 HOH HOH . 
G 5 HOH A 83 383 130 HOH HOH . 
G 5 HOH A 84 384 19 HOH HOH . 
G 5 HOH A 85 385 112 HOH HOH . 
G 5 HOH A 86 386 95 HOH HOH . 
G 5 HOH A 87 387 270 HOH HOH . 
G 5 HOH A 88 388 101 HOH HOH . 
G 5 HOH A 89 389 156 HOH HOH . 
G 5 HOH A 90 390 17 HOH HOH . 
G 5 HOH A 91 391 248 HOH HOH . 
G 5 HOH A 92 392 42 HOH HOH . 
G 5 HOH A 93 393 66 HOH HOH . 
G 5 HOH A 94 394 192 HOH HOH . 
G 5 HOH A 95 395 39 HOH HOH . 
G 5 HOH A 96 396 43 HOH HOH . 
G 5 HOH A 97 397 35 HOH HOH . 
G 5 HOH A 98 398 36 HOH HOH . 
G 5 HOH A 99 399 155 HOH HOH . 
G 5 HOH A 100 400 167 HOH HOH . 
G 5 HOH A 101 401 261 HOH HOH . 
G 5 HOH A 102 402 228 HOH HOH . 
G 5 HOH A 103 403 87 HOH HOH . 
G 5 HOH A 104 404 119 HOH HOH . 
G 5 HOH A 105 405 106 HOH HOH . 
G 5 HOH A 106 406 92 HOH HOH . 
G 5 HOH A 107 407 25 HOH HOH . 
G 5 HOH A 108 408 266 HOH HOH . 
G 5 HOH A 109 409 40 HOH HOH . 
G 5 HOH A 110 410 89 HOH HOH . 
G 5 HOH A 111 411 177 HOH HOH . 
G 5 HOH A 112 412 107 HOH HOH . 
G 5 HOH A 113 413 139 HOH HOH . 
G 5 HOH A 114 414 70 HOH HOH . 
G 5 HOH A 115 415 200 HOH HOH . 
G 5 HOH A 116 416 64 HOH HOH . 
G 5 HOH A 117 417 116 HOH HOH . 
G 5 HOH A 118 418 72 HOH HOH . 
G 5 HOH A 119 419 77 HOH HOH . 
G 5 HOH A 120 420 67 HOH HOH . 
G 5 HOH A 121 421 6 HOH HOH . 
G 5 HOH A 122 422 24 HOH HOH . 
G 5 HOH A 123 423 20 HOH HOH . 
G 5 HOH A 124 424 98 HOH HOH . 
G 5 HOH A 125 425 23 HOH HOH . 
G 5 HOH A 126 426 221 HOH HOH . 
G 5 HOH A 127 427 84 HOH HOH . 
G 5 HOH A 128 428 12 HOH HOH . 
G 5 HOH A 129 429 274 HOH HOH . 
G 5 HOH A 130 430 86 HOH HOH . 
G 5 HOH A 131 431 290 HOH HOH . 
G 5 HOH A 132 432 122 HOH HOH . 
G 5 HOH A 133 433 152 HOH HOH . 
G 5 HOH A 134 434 269 HOH HOH . 
G 5 HOH A 135 435 226 HOH HOH . 
G 5 HOH A 136 436 289 HOH HOH . 
G 5 HOH A 137 437 258 HOH HOH . 
G 5 HOH A 138 438 58 HOH HOH . 
G 5 HOH A 139 439 108 HOH HOH . 
G 5 HOH A 140 440 146 HOH HOH . 
G 5 HOH A 141 441 179 HOH HOH . 
G 5 HOH A 142 442 272 HOH HOH . 
G 5 HOH A 143 443 53 HOH HOH . 
G 5 HOH A 144 444 149 HOH HOH . 
G 5 HOH A 145 445 105 HOH HOH . 
G 5 HOH A 146 446 227 HOH HOH . 
G 5 HOH A 147 447 222 HOH HOH . 
G 5 HOH A 148 448 281 HOH HOH . 
G 5 HOH A 149 449 201 HOH HOH . 
G 5 HOH A 150 450 8 HOH HOH . 
G 5 HOH A 151 451 80 HOH HOH . 
G 5 HOH A 152 452 94 HOH HOH . 
G 5 HOH A 153 453 249 HOH HOH . 
G 5 HOH A 154 454 134 HOH HOH . 
G 5 HOH A 155 455 219 HOH HOH . 
G 5 HOH A 156 456 140 HOH HOH . 
G 5 HOH A 157 457 284 HOH HOH . 
G 5 HOH A 158 458 97 HOH HOH . 
G 5 HOH A 159 459 69 HOH HOH . 
G 5 HOH A 160 460 83 HOH HOH . 
G 5 HOH A 161 461 136 HOH HOH . 
G 5 HOH A 162 462 291 HOH HOH . 
G 5 HOH A 163 463 173 HOH HOH . 
G 5 HOH A 164 464 165 HOH HOH . 
G 5 HOH A 165 465 240 HOH HOH . 
G 5 HOH A 166 466 138 HOH HOH . 
G 5 HOH A 167 467 191 HOH HOH . 
G 5 HOH A 168 468 135 HOH HOH . 
G 5 HOH A 169 469 113 HOH HOH . 
G 5 HOH A 170 470 247 HOH HOH . 
G 5 HOH A 171 471 61 HOH HOH . 
G 5 HOH A 172 472 129 HOH HOH . 
G 5 HOH A 173 473 235 HOH HOH . 
G 5 HOH A 174 474 37 HOH HOH . 
G 5 HOH A 175 475 244 HOH HOH . 
G 5 HOH A 176 476 104 HOH HOH . 
G 5 HOH A 177 477 59 HOH HOH . 
G 5 HOH A 178 478 265 HOH HOH . 
G 5 HOH A 179 479 184 HOH HOH . 
G 5 HOH A 180 480 168 HOH HOH . 
G 5 HOH A 181 481 181 HOH HOH . 
G 5 HOH A 182 482 209 HOH HOH . 
G 5 HOH A 183 483 230 HOH HOH . 
G 5 HOH A 184 484 132 HOH HOH . 
G 5 HOH A 185 485 145 HOH HOH . 
G 5 HOH A 186 486 148 HOH HOH . 
G 5 HOH A 187 487 142 HOH HOH . 
G 5 HOH A 188 488 288 HOH HOH . 
G 5 HOH A 189 489 172 HOH HOH . 
G 5 HOH A 190 490 202 HOH HOH . 
G 5 HOH A 191 491 234 HOH HOH . 
G 5 HOH A 192 492 162 HOH HOH . 
G 5 HOH A 193 493 213 HOH HOH . 
G 5 HOH A 194 494 170 HOH HOH . 
G 5 HOH A 195 495 90 HOH HOH . 
G 5 HOH A 196 496 251 HOH HOH . 
G 5 HOH A 197 497 143 HOH HOH . 
G 5 HOH A 198 498 242 HOH HOH . 
G 5 HOH A 199 499 141 HOH HOH . 
G 5 HOH A 200 500 164 HOH HOH . 
G 5 HOH A 201 501 30 HOH HOH . 
G 5 HOH A 202 502 220 HOH HOH . 
G 5 HOH A 203 503 118 HOH HOH . 
G 5 HOH A 204 504 243 HOH HOH . 
G 5 HOH A 205 505 190 HOH HOH . 
G 5 HOH A 206 506 65 HOH HOH . 
G 5 HOH A 207 507 93 HOH HOH . 
G 5 HOH A 208 508 198 HOH HOH . 
G 5 HOH A 209 509 99 HOH HOH . 
G 5 HOH A 210 510 287 HOH HOH . 
G 5 HOH A 211 511 262 HOH HOH . 
G 5 HOH A 212 512 74 HOH HOH . 
G 5 HOH A 213 513 171 HOH HOH . 
G 5 HOH A 214 514 199 HOH HOH . 
G 5 HOH A 215 515 257 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . C 3 7.747 -3.678 -9.369 1 11.29 ? S DMS 202 A 1 
HETATM 2 O O DMS . . . C 3 8.955 -4.329 -8.72 1 11.18 ? O DMS 202 A 1 
HETATM 3 C C1 DMS . . . C 3 7.931 -4.135 -11.091 1 11.49 ? C1 DMS 202 A 1 
HETATM 4 C C2 DMS . . . C 3 6.379 -4.727 -8.894 1 11.23 ? C2 DMS 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           4 
#