data_5SBL
#
_model_server_result.job_id            0oDO6CfHUQGfQ_lMKcevgQ 
_model_server_result.datetime_utc      '2024-11-24 21:05:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sbl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5SBL 
#
_exptl.entry_id    5SBL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.75 
_cell.angle_gamma         90 
_cell.entry_id            5SBL 
_cell.length_a            30.668 
_cell.length_b            81.473 
_cell.length_c            31.911 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SBL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     5SBL 
_atom_sites.fract_transf_matrix[1][1]    0.032607 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.017156 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.03541 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 T6J A 1 201 201 T6J LIG . 
C 3 DMS A 1 202 1 DMS DMS . 
D 3 DMS A 1 203 2 DMS DMS . 
E 3 DMS A 1 204 3 DMS DMS . 
F 4 EDO A 1 205 2 EDO EDO . 
G 5 HOH A 1 301 278 HOH HOH . 
G 5 HOH A 2 302 71 HOH HOH . 
G 5 HOH A 3 303 161 HOH HOH . 
G 5 HOH A 4 304 103 HOH HOH . 
G 5 HOH A 5 305 163 HOH HOH . 
G 5 HOH A 6 306 55 HOH HOH . 
G 5 HOH A 7 307 175 HOH HOH . 
G 5 HOH A 8 308 60 HOH HOH . 
G 5 HOH A 9 309 180 HOH HOH . 
G 5 HOH A 10 310 125 HOH HOH . 
G 5 HOH A 11 311 21 HOH HOH . 
G 5 HOH A 12 312 192 HOH HOH . 
G 5 HOH A 13 313 50 HOH HOH . 
G 5 HOH A 14 314 49 HOH HOH . 
G 5 HOH A 15 315 215 HOH HOH . 
G 5 HOH A 16 316 85 HOH HOH . 
G 5 HOH A 17 317 114 HOH HOH . 
G 5 HOH A 18 318 120 HOH HOH . 
G 5 HOH A 19 319 13 HOH HOH . 
G 5 HOH A 20 320 76 HOH HOH . 
G 5 HOH A 21 321 137 HOH HOH . 
G 5 HOH A 22 322 91 HOH HOH . 
G 5 HOH A 23 323 10 HOH HOH . 
G 5 HOH A 24 324 66 HOH HOH . 
G 5 HOH A 25 325 44 HOH HOH . 
G 5 HOH A 26 326 255 HOH HOH . 
G 5 HOH A 27 327 297 HOH HOH . 
G 5 HOH A 28 328 107 HOH HOH . 
G 5 HOH A 29 329 101 HOH HOH . 
G 5 HOH A 30 330 110 HOH HOH . 
G 5 HOH A 31 331 144 HOH HOH . 
G 5 HOH A 32 332 4 HOH HOH . 
G 5 HOH A 33 333 205 HOH HOH . 
G 5 HOH A 34 334 185 HOH HOH . 
G 5 HOH A 35 335 81 HOH HOH . 
G 5 HOH A 36 336 147 HOH HOH . 
G 5 HOH A 37 337 109 HOH HOH . 
G 5 HOH A 38 338 51 HOH HOH . 
G 5 HOH A 39 339 218 HOH HOH . 
G 5 HOH A 40 340 102 HOH HOH . 
G 5 HOH A 41 341 56 HOH HOH . 
G 5 HOH A 42 342 2 HOH HOH . 
G 5 HOH A 43 343 46 HOH HOH . 
G 5 HOH A 44 344 1 HOH HOH . 
G 5 HOH A 45 345 127 HOH HOH . 
G 5 HOH A 46 346 34 HOH HOH . 
G 5 HOH A 47 347 18 HOH HOH . 
G 5 HOH A 48 348 79 HOH HOH . 
G 5 HOH A 49 349 31 HOH HOH . 
G 5 HOH A 50 350 271 HOH HOH . 
G 5 HOH A 51 351 232 HOH HOH . 
G 5 HOH A 52 352 7 HOH HOH . 
G 5 HOH A 53 353 54 HOH HOH . 
G 5 HOH A 54 354 35 HOH HOH . 
G 5 HOH A 55 355 57 HOH HOH . 
G 5 HOH A 56 356 100 HOH HOH . 
G 5 HOH A 57 357 82 HOH HOH . 
G 5 HOH A 58 358 27 HOH HOH . 
G 5 HOH A 59 359 41 HOH HOH . 
G 5 HOH A 60 360 254 HOH HOH . 
G 5 HOH A 61 361 14 HOH HOH . 
G 5 HOH A 62 362 238 HOH HOH . 
G 5 HOH A 63 363 28 HOH HOH . 
G 5 HOH A 64 364 78 HOH HOH . 
G 5 HOH A 65 365 212 HOH HOH . 
G 5 HOH A 66 366 146 HOH HOH . 
G 5 HOH A 67 367 15 HOH HOH . 
G 5 HOH A 68 368 29 HOH HOH . 
G 5 HOH A 69 369 178 HOH HOH . 
G 5 HOH A 70 370 293 HOH HOH . 
G 5 HOH A 71 371 33 HOH HOH . 
G 5 HOH A 72 372 3 HOH HOH . 
G 5 HOH A 73 373 38 HOH HOH . 
G 5 HOH A 74 374 26 HOH HOH . 
G 5 HOH A 75 375 5 HOH HOH . 
G 5 HOH A 76 376 158 HOH HOH . 
G 5 HOH A 77 377 63 HOH HOH . 
G 5 HOH A 78 378 11 HOH HOH . 
G 5 HOH A 79 379 45 HOH HOH . 
G 5 HOH A 80 380 32 HOH HOH . 
G 5 HOH A 81 381 226 HOH HOH . 
G 5 HOH A 82 382 16 HOH HOH . 
G 5 HOH A 83 383 196 HOH HOH . 
G 5 HOH A 84 384 252 HOH HOH . 
G 5 HOH A 85 385 9 HOH HOH . 
G 5 HOH A 86 386 75 HOH HOH . 
G 5 HOH A 87 387 22 HOH HOH . 
G 5 HOH A 88 388 116 HOH HOH . 
G 5 HOH A 89 389 68 HOH HOH . 
G 5 HOH A 90 390 39 HOH HOH . 
G 5 HOH A 91 391 48 HOH HOH . 
G 5 HOH A 92 392 295 HOH HOH . 
G 5 HOH A 93 393 72 HOH HOH . 
G 5 HOH A 94 394 112 HOH HOH . 
G 5 HOH A 95 395 155 HOH HOH . 
G 5 HOH A 96 396 160 HOH HOH . 
G 5 HOH A 97 397 154 HOH HOH . 
G 5 HOH A 98 398 36 HOH HOH . 
G 5 HOH A 99 399 228 HOH HOH . 
G 5 HOH A 100 400 42 HOH HOH . 
G 5 HOH A 101 401 95 HOH HOH . 
G 5 HOH A 102 402 298 HOH HOH . 
G 5 HOH A 103 403 43 HOH HOH . 
G 5 HOH A 104 404 182 HOH HOH . 
G 5 HOH A 105 405 290 HOH HOH . 
G 5 HOH A 106 406 128 HOH HOH . 
G 5 HOH A 107 407 291 HOH HOH . 
G 5 HOH A 108 408 47 HOH HOH . 
G 5 HOH A 109 409 189 HOH HOH . 
G 5 HOH A 110 410 261 HOH HOH . 
G 5 HOH A 111 411 25 HOH HOH . 
G 5 HOH A 112 412 250 HOH HOH . 
G 5 HOH A 113 413 73 HOH HOH . 
G 5 HOH A 114 414 292 HOH HOH . 
G 5 HOH A 115 415 159 HOH HOH . 
G 5 HOH A 116 416 139 HOH HOH . 
G 5 HOH A 117 417 67 HOH HOH . 
G 5 HOH A 118 418 210 HOH HOH . 
G 5 HOH A 119 419 177 HOH HOH . 
G 5 HOH A 120 420 223 HOH HOH . 
G 5 HOH A 121 421 121 HOH HOH . 
G 5 HOH A 122 422 156 HOH HOH . 
G 5 HOH A 123 423 20 HOH HOH . 
G 5 HOH A 124 424 227 HOH HOH . 
G 5 HOH A 125 425 86 HOH HOH . 
G 5 HOH A 126 426 153 HOH HOH . 
G 5 HOH A 127 427 239 HOH HOH . 
G 5 HOH A 128 428 294 HOH HOH . 
G 5 HOH A 129 429 24 HOH HOH . 
G 5 HOH A 130 430 106 HOH HOH . 
G 5 HOH A 131 431 157 HOH HOH . 
G 5 HOH A 132 432 197 HOH HOH . 
G 5 HOH A 133 433 6 HOH HOH . 
G 5 HOH A 134 434 87 HOH HOH . 
G 5 HOH A 135 435 98 HOH HOH . 
G 5 HOH A 136 436 40 HOH HOH . 
G 5 HOH A 137 437 92 HOH HOH . 
G 5 HOH A 138 438 167 HOH HOH . 
G 5 HOH A 139 439 123 HOH HOH . 
G 5 HOH A 140 440 221 HOH HOH . 
G 5 HOH A 141 441 64 HOH HOH . 
G 5 HOH A 142 442 174 HOH HOH . 
G 5 HOH A 143 443 179 HOH HOH . 
G 5 HOH A 144 444 272 HOH HOH . 
G 5 HOH A 145 445 23 HOH HOH . 
G 5 HOH A 146 446 12 HOH HOH . 
G 5 HOH A 147 447 256 HOH HOH . 
G 5 HOH A 148 448 259 HOH HOH . 
G 5 HOH A 149 449 152 HOH HOH . 
G 5 HOH A 150 450 94 HOH HOH . 
G 5 HOH A 151 451 122 HOH HOH . 
G 5 HOH A 152 452 270 HOH HOH . 
G 5 HOH A 153 453 264 HOH HOH . 
G 5 HOH A 154 454 17 HOH HOH . 
G 5 HOH A 155 455 130 HOH HOH . 
G 5 HOH A 156 456 96 HOH HOH . 
G 5 HOH A 157 457 105 HOH HOH . 
G 5 HOH A 158 458 70 HOH HOH . 
G 5 HOH A 159 459 124 HOH HOH . 
G 5 HOH A 160 460 258 HOH HOH . 
G 5 HOH A 161 461 8 HOH HOH . 
G 5 HOH A 162 462 201 HOH HOH . 
G 5 HOH A 163 463 281 HOH HOH . 
G 5 HOH A 164 464 80 HOH HOH . 
G 5 HOH A 165 465 58 HOH HOH . 
G 5 HOH A 166 466 149 HOH HOH . 
G 5 HOH A 167 467 84 HOH HOH . 
G 5 HOH A 168 468 151 HOH HOH . 
G 5 HOH A 169 469 53 HOH HOH . 
G 5 HOH A 170 470 119 HOH HOH . 
G 5 HOH A 171 471 237 HOH HOH . 
G 5 HOH A 172 472 283 HOH HOH . 
G 5 HOH A 173 473 77 HOH HOH . 
G 5 HOH A 174 474 183 HOH HOH . 
G 5 HOH A 175 475 222 HOH HOH . 
G 5 HOH A 176 476 225 HOH HOH . 
G 5 HOH A 177 477 131 HOH HOH . 
G 5 HOH A 178 478 280 HOH HOH . 
G 5 HOH A 179 479 219 HOH HOH . 
G 5 HOH A 180 480 111 HOH HOH . 
G 5 HOH A 181 481 165 HOH HOH . 
G 5 HOH A 182 482 52 HOH HOH . 
G 5 HOH A 183 483 193 HOH HOH . 
G 5 HOH A 184 484 134 HOH HOH . 
G 5 HOH A 185 485 207 HOH HOH . 
G 5 HOH A 186 486 200 HOH HOH . 
G 5 HOH A 187 487 249 HOH HOH . 
G 5 HOH A 188 488 136 HOH HOH . 
G 5 HOH A 189 489 204 HOH HOH . 
G 5 HOH A 190 490 235 HOH HOH . 
G 5 HOH A 191 491 140 HOH HOH . 
G 5 HOH A 192 492 248 HOH HOH . 
G 5 HOH A 193 493 236 HOH HOH . 
G 5 HOH A 194 494 69 HOH HOH . 
G 5 HOH A 195 495 188 HOH HOH . 
G 5 HOH A 196 496 173 HOH HOH . 
G 5 HOH A 197 497 89 HOH HOH . 
G 5 HOH A 198 498 166 HOH HOH . 
G 5 HOH A 199 499 243 HOH HOH . 
G 5 HOH A 200 500 267 HOH HOH . 
G 5 HOH A 201 501 113 HOH HOH . 
G 5 HOH A 202 502 170 HOH HOH . 
G 5 HOH A 203 503 97 HOH HOH . 
G 5 HOH A 204 504 83 HOH HOH . 
G 5 HOH A 205 505 135 HOH HOH . 
G 5 HOH A 206 506 194 HOH HOH . 
G 5 HOH A 207 507 191 HOH HOH . 
G 5 HOH A 208 508 61 HOH HOH . 
G 5 HOH A 209 509 104 HOH HOH . 
G 5 HOH A 210 510 168 HOH HOH . 
G 5 HOH A 211 511 37 HOH HOH . 
G 5 HOH A 212 512 138 HOH HOH . 
G 5 HOH A 213 513 184 HOH HOH . 
G 5 HOH A 214 514 172 HOH HOH . 
G 5 HOH A 215 515 88 HOH HOH . 
G 5 HOH A 216 516 118 HOH HOH . 
G 5 HOH A 217 517 202 HOH HOH . 
G 5 HOH A 218 518 275 HOH HOH . 
G 5 HOH A 219 519 241 HOH HOH . 
G 5 HOH A 220 520 251 HOH HOH . 
G 5 HOH A 221 521 59 HOH HOH . 
G 5 HOH A 222 522 181 HOH HOH . 
G 5 HOH A 223 523 132 HOH HOH . 
G 5 HOH A 224 524 150 HOH HOH . 
G 5 HOH A 225 525 285 HOH HOH . 
G 5 HOH A 226 526 164 HOH HOH . 
G 5 HOH A 227 527 145 HOH HOH . 
G 5 HOH A 228 528 186 HOH HOH . 
G 5 HOH A 229 529 143 HOH HOH . 
G 5 HOH A 230 530 142 HOH HOH . 
G 5 HOH A 231 531 30 HOH HOH . 
G 5 HOH A 232 532 90 HOH HOH . 
G 5 HOH A 233 533 266 HOH HOH . 
G 5 HOH A 234 534 141 HOH HOH . 
G 5 HOH A 235 535 169 HOH HOH . 
G 5 HOH A 236 536 274 HOH HOH . 
G 5 HOH A 237 537 296 HOH HOH . 
G 5 HOH A 238 538 230 HOH HOH . 
G 5 HOH A 239 539 176 HOH HOH . 
G 5 HOH A 240 540 190 HOH HOH . 
G 5 HOH A 241 541 65 HOH HOH . 
G 5 HOH A 242 542 99 HOH HOH . 
G 5 HOH A 243 543 244 HOH HOH . 
G 5 HOH A 244 544 198 HOH HOH . 
G 5 HOH A 245 545 93 HOH HOH . 
G 5 HOH A 246 546 162 HOH HOH . 
G 5 HOH A 247 547 74 HOH HOH . 
G 5 HOH A 248 548 199 HOH HOH . 
G 5 HOH A 249 549 171 HOH HOH . 
G 5 HOH A 250 550 246 HOH HOH . 
G 5 HOH A 251 551 257 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 -5.665 -19.546 9.558 1 26.8 ? S DMS 203 A 1 
HETATM 2 O O DMS . . . D 3 -4.26 -20.093 9.372 1 23.54 ? O DMS 203 A 1 
HETATM 3 C C1 DMS . . . D 3 -6.48 -20.633 10.699 1 25.74 ? C1 DMS 203 A 1 
HETATM 4 C C2 DMS . . . D 3 -6.584 -20.029 8.132 1 25.85 ? C2 DMS 203 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#