data_5SBN # _model_server_result.job_id iKSvKpOeGNCP4EmSnsYHfQ _model_server_result.datetime_utc '2024-12-03 04:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sbn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5SBN # _exptl.entry_id 5SBN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.78 _cell.angle_gamma 90 _cell.entry_id 5SBN _cell.length_a 30.782 _cell.length_b 81.31 _cell.length_c 31.914 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SBN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 112 n n C1 C2 EDO sing 113 n n C1 H11 EDO sing 114 n n C1 H12 EDO sing 115 n n O1 HO1 EDO sing 116 n n C2 O2 EDO sing 117 n n C2 H21 EDO sing 118 n n C2 H22 EDO sing 119 n n O2 HO2 EDO sing 120 n n # _atom_sites.entry_id 5SBN _atom_sites.fract_transf_matrix[1][1] 0.032487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017114 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9KS A 1 201 201 9KS LIG . C 3 DMS A 1 202 1 DMS DMS . D 3 DMS A 1 203 2 DMS DMS . E 3 DMS A 1 204 3 DMS DMS . F 4 EDO A 1 205 1 EDO EDO . G 4 EDO A 1 206 2 EDO EDO . H 5 HOH A 1 301 32 HOH HOH . H 5 HOH A 2 302 278 HOH HOH . H 5 HOH A 3 303 41 HOH HOH . H 5 HOH A 4 304 296 HOH HOH . H 5 HOH A 5 305 163 HOH HOH . H 5 HOH A 6 306 71 HOH HOH . H 5 HOH A 7 307 295 HOH HOH . H 5 HOH A 8 308 62 HOH HOH . H 5 HOH A 9 309 292 HOH HOH . H 5 HOH A 10 310 103 HOH HOH . H 5 HOH A 11 311 115 HOH HOH . H 5 HOH A 12 312 120 HOH HOH . H 5 HOH A 13 313 21 HOH HOH . H 5 HOH A 14 314 114 HOH HOH . H 5 HOH A 15 315 68 HOH HOH . H 5 HOH A 16 316 51 HOH HOH . H 5 HOH A 17 317 85 HOH HOH . H 5 HOH A 18 318 238 HOH HOH . H 5 HOH A 19 319 205 HOH HOH . H 5 HOH A 20 320 49 HOH HOH . H 5 HOH A 21 321 81 HOH HOH . H 5 HOH A 22 322 180 HOH HOH . H 5 HOH A 23 323 60 HOH HOH . H 5 HOH A 24 324 254 HOH HOH . H 5 HOH A 25 325 2 HOH HOH . H 5 HOH A 26 326 144 HOH HOH . H 5 HOH A 27 327 50 HOH HOH . H 5 HOH A 28 328 76 HOH HOH . H 5 HOH A 29 329 79 HOH HOH . H 5 HOH A 30 330 27 HOH HOH . H 5 HOH A 31 331 33 HOH HOH . H 5 HOH A 32 332 13 HOH HOH . H 5 HOH A 33 333 91 HOH HOH . H 5 HOH A 34 334 109 HOH HOH . H 5 HOH A 35 335 1 HOH HOH . H 5 HOH A 36 336 26 HOH HOH . H 5 HOH A 37 337 178 HOH HOH . H 5 HOH A 38 338 46 HOH HOH . H 5 HOH A 39 339 147 HOH HOH . H 5 HOH A 40 340 4 HOH HOH . H 5 HOH A 41 341 102 HOH HOH . H 5 HOH A 42 342 34 HOH HOH . H 5 HOH A 43 343 112 HOH HOH . H 5 HOH A 44 344 18 HOH HOH . H 5 HOH A 45 345 63 HOH HOH . H 5 HOH A 46 346 44 HOH HOH . H 5 HOH A 47 347 66 HOH HOH . H 5 HOH A 48 348 78 HOH HOH . H 5 HOH A 49 349 31 HOH HOH . H 5 HOH A 50 350 10 HOH HOH . H 5 HOH A 51 351 57 HOH HOH . H 5 HOH A 52 352 55 HOH HOH . H 5 HOH A 53 353 38 HOH HOH . H 5 HOH A 54 354 3 HOH HOH . H 5 HOH A 55 355 130 HOH HOH . H 5 HOH A 56 356 45 HOH HOH . H 5 HOH A 57 357 14 HOH HOH . H 5 HOH A 58 358 125 HOH HOH . H 5 HOH A 59 359 15 HOH HOH . H 5 HOH A 60 360 22 HOH HOH . H 5 HOH A 61 361 5 HOH HOH . H 5 HOH A 62 362 7 HOH HOH . H 5 HOH A 63 363 82 HOH HOH . H 5 HOH A 64 364 137 HOH HOH . H 5 HOH A 65 365 19 HOH HOH . H 5 HOH A 66 366 255 HOH HOH . H 5 HOH A 67 367 35 HOH HOH . H 5 HOH A 68 368 11 HOH HOH . H 5 HOH A 69 369 160 HOH HOH . H 5 HOH A 70 370 126 HOH HOH . H 5 HOH A 71 371 154 HOH HOH . H 5 HOH A 72 372 9 HOH HOH . H 5 HOH A 73 373 54 HOH HOH . H 5 HOH A 74 374 28 HOH HOH . H 5 HOH A 75 375 95 HOH HOH . H 5 HOH A 76 376 101 HOH HOH . H 5 HOH A 77 377 193 HOH HOH . H 5 HOH A 78 378 73 HOH HOH . H 5 HOH A 79 379 29 HOH HOH . H 5 HOH A 80 380 294 HOH HOH . H 5 HOH A 81 381 223 HOH HOH . H 5 HOH A 82 382 293 HOH HOH . H 5 HOH A 83 383 100 HOH HOH . H 5 HOH A 84 384 110 HOH HOH . H 5 HOH A 85 385 124 HOH HOH . H 5 HOH A 86 386 271 HOH HOH . H 5 HOH A 87 387 161 HOH HOH . H 5 HOH A 88 388 56 HOH HOH . H 5 HOH A 89 389 155 HOH HOH . H 5 HOH A 90 390 245 HOH HOH . H 5 HOH A 91 391 16 HOH HOH . H 5 HOH A 92 392 127 HOH HOH . H 5 HOH A 93 393 42 HOH HOH . H 5 HOH A 94 394 48 HOH HOH . H 5 HOH A 95 395 116 HOH HOH . H 5 HOH A 96 396 36 HOH HOH . H 5 HOH A 97 397 158 HOH HOH . H 5 HOH A 98 398 272 HOH HOH . H 5 HOH A 99 399 250 HOH HOH . H 5 HOH A 100 400 47 HOH HOH . H 5 HOH A 101 401 107 HOH HOH . H 5 HOH A 102 402 228 HOH HOH . H 5 HOH A 103 403 43 HOH HOH . H 5 HOH A 104 404 189 HOH HOH . H 5 HOH A 105 405 259 HOH HOH . H 5 HOH A 106 406 25 HOH HOH . H 5 HOH A 107 407 174 HOH HOH . H 5 HOH A 108 408 119 HOH HOH . H 5 HOH A 109 409 146 HOH HOH . H 5 HOH A 110 410 106 HOH HOH . H 5 HOH A 111 411 39 HOH HOH . H 5 HOH A 112 412 123 HOH HOH . H 5 HOH A 113 413 64 HOH HOH . H 5 HOH A 114 414 153 HOH HOH . H 5 HOH A 115 415 72 HOH HOH . H 5 HOH A 116 416 67 HOH HOH . H 5 HOH A 117 417 40 HOH HOH . H 5 HOH A 118 418 261 HOH HOH . H 5 HOH A 119 419 156 HOH HOH . H 5 HOH A 120 420 108 HOH HOH . H 5 HOH A 121 421 159 HOH HOH . H 5 HOH A 122 422 86 HOH HOH . H 5 HOH A 123 423 6 HOH HOH . H 5 HOH A 124 424 121 HOH HOH . H 5 HOH A 125 425 167 HOH HOH . H 5 HOH A 126 426 20 HOH HOH . H 5 HOH A 127 427 224 HOH HOH . H 5 HOH A 128 428 92 HOH HOH . H 5 HOH A 129 429 200 HOH HOH . H 5 HOH A 130 430 111 HOH HOH . H 5 HOH A 131 431 87 HOH HOH . H 5 HOH A 132 432 98 HOH HOH . H 5 HOH A 133 433 239 HOH HOH . H 5 HOH A 134 434 139 HOH HOH . H 5 HOH A 135 435 17 HOH HOH . H 5 HOH A 136 436 24 HOH HOH . H 5 HOH A 137 437 270 HOH HOH . H 5 HOH A 138 438 177 HOH HOH . H 5 HOH A 139 439 12 HOH HOH . H 5 HOH A 140 440 212 HOH HOH . H 5 HOH A 141 441 23 HOH HOH . H 5 HOH A 142 442 221 HOH HOH . H 5 HOH A 143 443 77 HOH HOH . H 5 HOH A 144 444 227 HOH HOH . H 5 HOH A 145 445 264 HOH HOH . H 5 HOH A 146 446 70 HOH HOH . H 5 HOH A 147 447 8 HOH HOH . H 5 HOH A 148 448 151 HOH HOH . H 5 HOH A 149 449 290 HOH HOH . H 5 HOH A 150 450 281 HOH HOH . H 5 HOH A 151 451 197 HOH HOH . H 5 HOH A 152 452 96 HOH HOH . H 5 HOH A 153 453 252 HOH HOH . H 5 HOH A 154 454 237 HOH HOH . H 5 HOH A 155 455 226 HOH HOH . H 5 HOH A 156 456 258 HOH HOH . H 5 HOH A 157 457 152 HOH HOH . H 5 HOH A 158 458 105 HOH HOH . H 5 HOH A 159 459 179 HOH HOH . H 5 HOH A 160 460 256 HOH HOH . H 5 HOH A 161 461 58 HOH HOH . H 5 HOH A 162 462 89 HOH HOH . H 5 HOH A 163 463 149 HOH HOH . H 5 HOH A 164 464 266 HOH HOH . H 5 HOH A 165 465 284 HOH HOH . H 5 HOH A 166 466 183 HOH HOH . H 5 HOH A 167 467 53 HOH HOH . H 5 HOH A 168 468 225 HOH HOH . H 5 HOH A 169 469 122 HOH HOH . H 5 HOH A 170 470 94 HOH HOH . H 5 HOH A 171 471 80 HOH HOH . H 5 HOH A 172 472 273 HOH HOH . H 5 HOH A 173 473 176 HOH HOH . H 5 HOH A 174 474 279 HOH HOH . H 5 HOH A 175 475 201 HOH HOH . H 5 HOH A 176 476 134 HOH HOH . H 5 HOH A 177 477 291 HOH HOH . H 5 HOH A 178 478 233 HOH HOH . H 5 HOH A 179 479 274 HOH HOH . H 5 HOH A 180 480 84 HOH HOH . H 5 HOH A 181 481 219 HOH HOH . H 5 HOH A 182 482 131 HOH HOH . H 5 HOH A 183 483 222 HOH HOH . H 5 HOH A 184 484 140 HOH HOH . H 5 HOH A 185 485 113 HOH HOH . H 5 HOH A 186 486 97 HOH HOH . H 5 HOH A 187 487 185 HOH HOH . H 5 HOH A 188 488 243 HOH HOH . H 5 HOH A 189 489 214 HOH HOH . H 5 HOH A 190 490 191 HOH HOH . H 5 HOH A 191 491 230 HOH HOH . H 5 HOH A 192 492 249 HOH HOH . H 5 HOH A 193 493 173 HOH HOH . H 5 HOH A 194 494 241 HOH HOH . H 5 HOH A 195 495 69 HOH HOH . H 5 HOH A 196 496 165 HOH HOH . H 5 HOH A 197 497 188 HOH HOH . H 5 HOH A 198 498 166 HOH HOH . H 5 HOH A 199 499 136 HOH HOH . H 5 HOH A 200 500 135 HOH HOH . H 5 HOH A 201 501 83 HOH HOH . H 5 HOH A 202 502 282 HOH HOH . H 5 HOH A 203 503 187 HOH HOH . H 5 HOH A 204 504 61 HOH HOH . H 5 HOH A 205 505 37 HOH HOH . H 5 HOH A 206 506 148 HOH HOH . H 5 HOH A 207 507 104 HOH HOH . H 5 HOH A 208 508 194 HOH HOH . H 5 HOH A 209 509 170 HOH HOH . H 5 HOH A 210 510 181 HOH HOH . H 5 HOH A 211 511 184 HOH HOH . H 5 HOH A 212 512 138 HOH HOH . H 5 HOH A 213 513 162 HOH HOH . H 5 HOH A 214 514 236 HOH HOH . H 5 HOH A 215 515 168 HOH HOH . H 5 HOH A 216 516 145 HOH HOH . H 5 HOH A 217 517 247 HOH HOH . H 5 HOH A 218 518 59 HOH HOH . H 5 HOH A 219 519 172 HOH HOH . H 5 HOH A 220 520 287 HOH HOH . H 5 HOH A 221 521 288 HOH HOH . H 5 HOH A 222 522 283 HOH HOH . H 5 HOH A 223 523 142 HOH HOH . H 5 HOH A 224 524 118 HOH HOH . H 5 HOH A 225 525 202 HOH HOH . H 5 HOH A 226 526 90 HOH HOH . H 5 HOH A 227 527 186 HOH HOH . H 5 HOH A 228 528 143 HOH HOH . H 5 HOH A 229 529 213 HOH HOH . H 5 HOH A 230 530 132 HOH HOH . H 5 HOH A 231 531 164 HOH HOH . H 5 HOH A 232 532 251 HOH HOH . H 5 HOH A 233 533 234 HOH HOH . H 5 HOH A 234 534 169 HOH HOH . H 5 HOH A 235 535 209 HOH HOH . H 5 HOH A 236 536 30 HOH HOH . H 5 HOH A 237 537 141 HOH HOH . H 5 HOH A 238 538 211 HOH HOH . H 5 HOH A 239 539 88 HOH HOH . H 5 HOH A 240 540 244 HOH HOH . H 5 HOH A 241 541 190 HOH HOH . H 5 HOH A 242 542 208 HOH HOH . H 5 HOH A 243 543 99 HOH HOH . H 5 HOH A 244 544 242 HOH HOH . H 5 HOH A 245 545 65 HOH HOH . H 5 HOH A 246 546 150 HOH HOH . H 5 HOH A 247 547 93 HOH HOH . H 5 HOH A 248 548 262 HOH HOH . H 5 HOH A 249 549 74 HOH HOH . H 5 HOH A 250 550 199 HOH HOH . H 5 HOH A 251 551 171 HOH HOH . H 5 HOH A 252 552 246 HOH HOH . H 5 HOH A 253 553 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 1.763 3.925 -11.493 1 23.76 ? C1 EDO 206 A 1 HETATM 2 O O1 EDO . . . G 4 2.648 4.509 -10.566 1 21.54 ? O1 EDO 206 A 1 HETATM 3 C C2 EDO . . . G 4 2.479 3.194 -12.647 1 24.43 ? C2 EDO 206 A 1 HETATM 4 O O2 EDO . . . G 4 3.102 4.046 -13.628 1 25.78 ? O2 EDO 206 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #