data_5SBO # _model_server_result.job_id xVukgY6t6i7diHtjjLIq8A _model_server_result.datetime_utc '2025-01-10 09:17:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5SBO # _exptl.entry_id 5SBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.95 _cell.angle_gamma 90 _cell.entry_id 5SBO _cell.length_a 30.735 _cell.length_b 81.362 _cell.length_c 31.989 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 129 n n C1 C2 EDO sing 130 n n C1 H11 EDO sing 131 n n C1 H12 EDO sing 132 n n O1 HO1 EDO sing 133 n n C2 O2 EDO sing 134 n n C2 H21 EDO sing 135 n n C2 H22 EDO sing 136 n n O2 HO2 EDO sing 137 n n # _atom_sites.entry_id 5SBO _atom_sites.fract_transf_matrix[1][1] 0.032536 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8A5 A 1 201 201 8A5 LIG . C 3 DMS A 1 202 1 DMS DMS . D 3 DMS A 1 203 2 DMS DMS . E 3 DMS A 1 204 3 DMS DMS . F 4 EDO A 1 205 1 EDO EDO . G 4 EDO A 1 206 2 EDO EDO . H 5 HOH A 1 301 163 HOH HOH . H 5 HOH A 2 302 229 HOH HOH . H 5 HOH A 3 303 126 HOH HOH . H 5 HOH A 4 304 103 HOH HOH . H 5 HOH A 5 305 175 HOH HOH . H 5 HOH A 6 306 114 HOH HOH . H 5 HOH A 7 307 192 HOH HOH . H 5 HOH A 8 308 21 HOH HOH . H 5 HOH A 9 309 263 HOH HOH . H 5 HOH A 10 310 137 HOH HOH . H 5 HOH A 11 311 50 HOH HOH . H 5 HOH A 12 312 14 HOH HOH . H 5 HOH A 13 313 41 HOH HOH . H 5 HOH A 14 314 206 HOH HOH . H 5 HOH A 15 315 71 HOH HOH . H 5 HOH A 16 316 115 HOH HOH . H 5 HOH A 17 317 291 HOH HOH . H 5 HOH A 18 318 278 HOH HOH . H 5 HOH A 19 319 51 HOH HOH . H 5 HOH A 20 320 68 HOH HOH . H 5 HOH A 21 321 91 HOH HOH . H 5 HOH A 22 322 1 HOH HOH . H 5 HOH A 23 323 31 HOH HOH . H 5 HOH A 24 324 34 HOH HOH . H 5 HOH A 25 325 4 HOH HOH . H 5 HOH A 26 326 144 HOH HOH . H 5 HOH A 27 327 205 HOH HOH . H 5 HOH A 28 328 180 HOH HOH . H 5 HOH A 29 329 46 HOH HOH . H 5 HOH A 30 330 238 HOH HOH . H 5 HOH A 31 331 216 HOH HOH . H 5 HOH A 32 332 18 HOH HOH . H 5 HOH A 33 333 217 HOH HOH . H 5 HOH A 34 334 57 HOH HOH . H 5 HOH A 35 335 49 HOH HOH . H 5 HOH A 36 336 2 HOH HOH . H 5 HOH A 37 337 60 HOH HOH . H 5 HOH A 38 338 218 HOH HOH . H 5 HOH A 39 339 85 HOH HOH . H 5 HOH A 40 340 195 HOH HOH . H 5 HOH A 41 341 78 HOH HOH . H 5 HOH A 42 342 26 HOH HOH . H 5 HOH A 43 343 110 HOH HOH . H 5 HOH A 44 344 154 HOH HOH . H 5 HOH A 45 345 250 HOH HOH . H 5 HOH A 46 346 130 HOH HOH . H 5 HOH A 47 347 33 HOH HOH . H 5 HOH A 48 348 147 HOH HOH . H 5 HOH A 49 349 66 HOH HOH . H 5 HOH A 50 350 27 HOH HOH . H 5 HOH A 51 351 82 HOH HOH . H 5 HOH A 52 352 54 HOH HOH . H 5 HOH A 53 353 28 HOH HOH . H 5 HOH A 54 354 298 HOH HOH . H 5 HOH A 55 355 271 HOH HOH . H 5 HOH A 56 356 11 HOH HOH . H 5 HOH A 57 357 3 HOH HOH . H 5 HOH A 58 358 81 HOH HOH . H 5 HOH A 59 359 10 HOH HOH . H 5 HOH A 60 360 76 HOH HOH . H 5 HOH A 61 361 19 HOH HOH . H 5 HOH A 62 362 102 HOH HOH . H 5 HOH A 63 363 5 HOH HOH . H 5 HOH A 64 364 95 HOH HOH . H 5 HOH A 65 365 45 HOH HOH . H 5 HOH A 66 366 159 HOH HOH . H 5 HOH A 67 367 55 HOH HOH . H 5 HOH A 68 368 109 HOH HOH . H 5 HOH A 69 369 254 HOH HOH . H 5 HOH A 70 370 117 HOH HOH . H 5 HOH A 71 371 182 HOH HOH . H 5 HOH A 72 372 44 HOH HOH . H 5 HOH A 73 373 224 HOH HOH . H 5 HOH A 74 374 125 HOH HOH . H 5 HOH A 75 375 127 HOH HOH . H 5 HOH A 76 376 63 HOH HOH . H 5 HOH A 77 377 268 HOH HOH . H 5 HOH A 78 378 64 HOH HOH . H 5 HOH A 79 379 29 HOH HOH . H 5 HOH A 80 380 239 HOH HOH . H 5 HOH A 81 381 7 HOH HOH . H 5 HOH A 82 382 197 HOH HOH . H 5 HOH A 83 383 174 HOH HOH . H 5 HOH A 84 384 13 HOH HOH . H 5 HOH A 85 385 178 HOH HOH . H 5 HOH A 86 386 269 HOH HOH . H 5 HOH A 87 387 56 HOH HOH . H 5 HOH A 88 388 42 HOH HOH . H 5 HOH A 89 389 15 HOH HOH . H 5 HOH A 90 390 120 HOH HOH . H 5 HOH A 91 391 116 HOH HOH . H 5 HOH A 92 392 112 HOH HOH . H 5 HOH A 93 393 160 HOH HOH . H 5 HOH A 94 394 39 HOH HOH . H 5 HOH A 95 395 293 HOH HOH . H 5 HOH A 96 396 101 HOH HOH . H 5 HOH A 97 397 16 HOH HOH . H 5 HOH A 98 398 215 HOH HOH . H 5 HOH A 99 399 47 HOH HOH . H 5 HOH A 100 400 9 HOH HOH . H 5 HOH A 101 401 121 HOH HOH . H 5 HOH A 102 402 73 HOH HOH . H 5 HOH A 103 403 22 HOH HOH . H 5 HOH A 104 404 100 HOH HOH . H 5 HOH A 105 405 108 HOH HOH . H 5 HOH A 106 406 124 HOH HOH . H 5 HOH A 107 407 158 HOH HOH . H 5 HOH A 108 408 107 HOH HOH . H 5 HOH A 109 409 38 HOH HOH . H 5 HOH A 110 410 223 HOH HOH . H 5 HOH A 111 411 35 HOH HOH . H 5 HOH A 112 412 106 HOH HOH . H 5 HOH A 113 413 36 HOH HOH . H 5 HOH A 114 414 48 HOH HOH . H 5 HOH A 115 415 155 HOH HOH . H 5 HOH A 116 416 189 HOH HOH . H 5 HOH A 117 417 79 HOH HOH . H 5 HOH A 118 418 231 HOH HOH . H 5 HOH A 119 419 255 HOH HOH . H 5 HOH A 120 420 75 HOH HOH . H 5 HOH A 121 421 25 HOH HOH . H 5 HOH A 122 422 227 HOH HOH . H 5 HOH A 123 423 210 HOH HOH . H 5 HOH A 124 424 43 HOH HOH . H 5 HOH A 125 425 87 HOH HOH . H 5 HOH A 126 426 261 HOH HOH . H 5 HOH A 127 427 212 HOH HOH . H 5 HOH A 128 428 153 HOH HOH . H 5 HOH A 129 429 40 HOH HOH . H 5 HOH A 130 430 228 HOH HOH . H 5 HOH A 131 431 105 HOH HOH . H 5 HOH A 132 432 157 HOH HOH . H 5 HOH A 133 433 86 HOH HOH . H 5 HOH A 134 434 200 HOH HOH . H 5 HOH A 135 435 161 HOH HOH . H 5 HOH A 136 436 6 HOH HOH . H 5 HOH A 137 437 299 HOH HOH . H 5 HOH A 138 438 24 HOH HOH . H 5 HOH A 139 439 20 HOH HOH . H 5 HOH A 140 440 259 HOH HOH . H 5 HOH A 141 441 232 HOH HOH . H 5 HOH A 142 442 245 HOH HOH . H 5 HOH A 143 443 152 HOH HOH . H 5 HOH A 144 444 270 HOH HOH . H 5 HOH A 145 445 177 HOH HOH . H 5 HOH A 146 446 123 HOH HOH . H 5 HOH A 147 447 256 HOH HOH . H 5 HOH A 148 448 156 HOH HOH . H 5 HOH A 149 449 233 HOH HOH . H 5 HOH A 150 450 128 HOH HOH . H 5 HOH A 151 451 139 HOH HOH . H 5 HOH A 152 452 279 HOH HOH . H 5 HOH A 153 453 17 HOH HOH . H 5 HOH A 154 454 12 HOH HOH . H 5 HOH A 155 455 272 HOH HOH . H 5 HOH A 156 456 167 HOH HOH . H 5 HOH A 157 457 23 HOH HOH . H 5 HOH A 158 458 196 HOH HOH . H 5 HOH A 159 459 193 HOH HOH . H 5 HOH A 160 460 252 HOH HOH . H 5 HOH A 161 461 92 HOH HOH . H 5 HOH A 162 462 221 HOH HOH . H 5 HOH A 163 463 72 HOH HOH . H 5 HOH A 164 464 122 HOH HOH . H 5 HOH A 165 465 284 HOH HOH . H 5 HOH A 166 466 146 HOH HOH . H 5 HOH A 167 467 179 HOH HOH . H 5 HOH A 168 468 58 HOH HOH . H 5 HOH A 169 469 281 HOH HOH . H 5 HOH A 170 470 176 HOH HOH . H 5 HOH A 171 471 248 HOH HOH . H 5 HOH A 172 472 134 HOH HOH . H 5 HOH A 173 473 70 HOH HOH . H 5 HOH A 174 474 295 HOH HOH . H 5 HOH A 175 475 8 HOH HOH . H 5 HOH A 176 476 267 HOH HOH . H 5 HOH A 177 477 149 HOH HOH . H 5 HOH A 178 478 183 HOH HOH . H 5 HOH A 179 479 80 HOH HOH . H 5 HOH A 180 480 237 HOH HOH . H 5 HOH A 181 481 258 HOH HOH . H 5 HOH A 182 482 264 HOH HOH . H 5 HOH A 183 483 84 HOH HOH . H 5 HOH A 184 484 280 HOH HOH . H 5 HOH A 185 485 94 HOH HOH . H 5 HOH A 186 486 119 HOH HOH . H 5 HOH A 187 487 297 HOH HOH . H 5 HOH A 188 488 207 HOH HOH . H 5 HOH A 189 489 53 HOH HOH . H 5 HOH A 190 490 96 HOH HOH . H 5 HOH A 191 491 276 HOH HOH . H 5 HOH A 192 492 225 HOH HOH . H 5 HOH A 193 493 219 HOH HOH . H 5 HOH A 194 494 98 HOH HOH . H 5 HOH A 195 495 226 HOH HOH . H 5 HOH A 196 496 292 HOH HOH . H 5 HOH A 197 497 89 HOH HOH . H 5 HOH A 198 498 249 HOH HOH . H 5 HOH A 199 499 32 HOH HOH . H 5 HOH A 200 500 131 HOH HOH . H 5 HOH A 201 501 69 HOH HOH . H 5 HOH A 202 502 191 HOH HOH . H 5 HOH A 203 503 222 HOH HOH . H 5 HOH A 204 504 111 HOH HOH . H 5 HOH A 205 505 140 HOH HOH . H 5 HOH A 206 506 52 HOH HOH . H 5 HOH A 207 507 273 HOH HOH . H 5 HOH A 208 508 201 HOH HOH . H 5 HOH A 209 509 136 HOH HOH . H 5 HOH A 210 510 274 HOH HOH . H 5 HOH A 211 511 235 HOH HOH . H 5 HOH A 212 512 83 HOH HOH . H 5 HOH A 213 513 283 HOH HOH . H 5 HOH A 214 514 113 HOH HOH . H 5 HOH A 215 515 214 HOH HOH . H 5 HOH A 216 516 59 HOH HOH . H 5 HOH A 217 517 211 HOH HOH . H 5 HOH A 218 518 188 HOH HOH . H 5 HOH A 219 519 138 HOH HOH . H 5 HOH A 220 520 168 HOH HOH . H 5 HOH A 221 521 230 HOH HOH . H 5 HOH A 222 522 241 HOH HOH . H 5 HOH A 223 523 166 HOH HOH . H 5 HOH A 224 524 290 HOH HOH . H 5 HOH A 225 525 282 HOH HOH . H 5 HOH A 226 526 243 HOH HOH . H 5 HOH A 227 527 173 HOH HOH . H 5 HOH A 228 528 185 HOH HOH . H 5 HOH A 229 529 61 HOH HOH . H 5 HOH A 230 530 286 HOH HOH . H 5 HOH A 231 531 37 HOH HOH . H 5 HOH A 232 532 244 HOH HOH . H 5 HOH A 233 533 135 HOH HOH . H 5 HOH A 234 534 247 HOH HOH . H 5 HOH A 235 535 170 HOH HOH . H 5 HOH A 236 536 181 HOH HOH . H 5 HOH A 237 537 204 HOH HOH . H 5 HOH A 238 538 129 HOH HOH . H 5 HOH A 239 539 184 HOH HOH . H 5 HOH A 240 540 145 HOH HOH . H 5 HOH A 241 541 294 HOH HOH . H 5 HOH A 242 542 187 HOH HOH . H 5 HOH A 243 543 165 HOH HOH . H 5 HOH A 244 544 104 HOH HOH . H 5 HOH A 245 545 67 HOH HOH . H 5 HOH A 246 546 234 HOH HOH . H 5 HOH A 247 547 213 HOH HOH . H 5 HOH A 248 548 186 HOH HOH . H 5 HOH A 249 549 88 HOH HOH . H 5 HOH A 250 550 253 HOH HOH . H 5 HOH A 251 551 162 HOH HOH . H 5 HOH A 252 552 169 HOH HOH . H 5 HOH A 253 553 194 HOH HOH . H 5 HOH A 254 554 143 HOH HOH . H 5 HOH A 255 555 203 HOH HOH . H 5 HOH A 256 556 151 HOH HOH . H 5 HOH A 257 557 277 HOH HOH . H 5 HOH A 258 558 118 HOH HOH . H 5 HOH A 259 559 142 HOH HOH . H 5 HOH A 260 560 209 HOH HOH . H 5 HOH A 261 561 236 HOH HOH . H 5 HOH A 262 562 172 HOH HOH . H 5 HOH A 263 563 287 HOH HOH . H 5 HOH A 264 564 275 HOH HOH . H 5 HOH A 265 565 251 HOH HOH . H 5 HOH A 266 566 90 HOH HOH . H 5 HOH A 267 567 202 HOH HOH . H 5 HOH A 268 568 30 HOH HOH . H 5 HOH A 269 569 164 HOH HOH . H 5 HOH A 270 570 141 HOH HOH . H 5 HOH A 271 571 99 HOH HOH . H 5 HOH A 272 572 133 HOH HOH . H 5 HOH A 273 573 93 HOH HOH . H 5 HOH A 274 574 300 HOH HOH . H 5 HOH A 275 575 198 HOH HOH . H 5 HOH A 276 576 266 HOH HOH . H 5 HOH A 277 577 208 HOH HOH . H 5 HOH A 278 578 65 HOH HOH . H 5 HOH A 279 579 285 HOH HOH . H 5 HOH A 280 580 150 HOH HOH . H 5 HOH A 281 581 190 HOH HOH . H 5 HOH A 282 582 240 HOH HOH . H 5 HOH A 283 583 262 HOH HOH . H 5 HOH A 284 584 74 HOH HOH . H 5 HOH A 285 585 171 HOH HOH . H 5 HOH A 286 586 260 HOH HOH . H 5 HOH A 287 587 199 HOH HOH . H 5 HOH A 288 588 246 HOH HOH . H 5 HOH A 289 589 257 HOH HOH . H 5 HOH A 290 590 296 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -8.716 4.603 -2.951 0.5 18.54 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 4 -8.299 5.269 -4.144 0.5 18.43 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 4 -10.035 5.202 -2.405 0.5 18.93 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 4 -10.666 4.295 -1.484 0.5 18.33 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #