data_5SBV
#
_model_server_result.job_id            QAGjmYtHTd7rQM9_RLQDpA 
_model_server_result.datetime_utc      '2024-11-22 00:39:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    5SBV 
#
_exptl.entry_id    5SBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.72 
_cell.angle_gamma         90 
_cell.entry_id            5SBV 
_cell.length_a            30.95 
_cell.length_b            81.647 
_cell.length_c            32.097 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     5SBV 
_atom_sites.fract_transf_matrix[1][1]    0.03231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.016978 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012248 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.035195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NW4 A 1 201 201 NW4 LIG . 
C 3 DMS A 1 202 1 DMS DMS . 
D 3 DMS A 1 203 2 DMS DMS . 
E 4 EDO A 1 204 1 EDO EDO . 
F 5 HOH A 1 301 278 HOH HOH . 
F 5 HOH A 2 302 41 HOH HOH . 
F 5 HOH A 3 303 268 HOH HOH . 
F 5 HOH A 4 304 32 HOH HOH . 
F 5 HOH A 5 305 163 HOH HOH . 
F 5 HOH A 6 306 103 HOH HOH . 
F 5 HOH A 7 307 255 HOH HOH . 
F 5 HOH A 8 308 85 HOH HOH . 
F 5 HOH A 9 309 231 HOH HOH . 
F 5 HOH A 10 310 62 HOH HOH . 
F 5 HOH A 11 311 192 HOH HOH . 
F 5 HOH A 12 312 71 HOH HOH . 
F 5 HOH A 13 313 60 HOH HOH . 
F 5 HOH A 14 314 21 HOH HOH . 
F 5 HOH A 15 315 295 HOH HOH . 
F 5 HOH A 16 316 271 HOH HOH . 
F 5 HOH A 17 317 114 HOH HOH . 
F 5 HOH A 18 318 49 HOH HOH . 
F 5 HOH A 19 319 174 HOH HOH . 
F 5 HOH A 20 320 115 HOH HOH . 
F 5 HOH A 21 321 50 HOH HOH . 
F 5 HOH A 22 322 120 HOH HOH . 
F 5 HOH A 23 323 78 HOH HOH . 
F 5 HOH A 24 324 180 HOH HOH . 
F 5 HOH A 25 325 46 HOH HOH . 
F 5 HOH A 26 326 144 HOH HOH . 
F 5 HOH A 27 327 34 HOH HOH . 
F 5 HOH A 28 328 91 HOH HOH . 
F 5 HOH A 29 329 254 HOH HOH . 
F 5 HOH A 30 330 212 HOH HOH . 
F 5 HOH A 31 331 31 HOH HOH . 
F 5 HOH A 32 332 125 HOH HOH . 
F 5 HOH A 33 333 178 HOH HOH . 
F 5 HOH A 34 334 2 HOH HOH . 
F 5 HOH A 35 335 13 HOH HOH . 
F 5 HOH A 36 336 51 HOH HOH . 
F 5 HOH A 37 337 205 HOH HOH . 
F 5 HOH A 38 338 4 HOH HOH . 
F 5 HOH A 39 339 79 HOH HOH . 
F 5 HOH A 40 340 27 HOH HOH . 
F 5 HOH A 41 341 3 HOH HOH . 
F 5 HOH A 42 342 159 HOH HOH . 
F 5 HOH A 43 343 57 HOH HOH . 
F 5 HOH A 44 344 7 HOH HOH . 
F 5 HOH A 45 345 102 HOH HOH . 
F 5 HOH A 46 346 18 HOH HOH . 
F 5 HOH A 47 347 1 HOH HOH . 
F 5 HOH A 48 348 54 HOH HOH . 
F 5 HOH A 49 349 38 HOH HOH . 
F 5 HOH A 50 350 26 HOH HOH . 
F 5 HOH A 51 351 81 HOH HOH . 
F 5 HOH A 52 352 109 HOH HOH . 
F 5 HOH A 53 353 82 HOH HOH . 
F 5 HOH A 54 354 290 HOH HOH . 
F 5 HOH A 55 355 73 HOH HOH . 
F 5 HOH A 56 356 68 HOH HOH . 
F 5 HOH A 57 357 44 HOH HOH . 
F 5 HOH A 58 358 249 HOH HOH . 
F 5 HOH A 59 359 10 HOH HOH . 
F 5 HOH A 60 360 76 HOH HOH . 
F 5 HOH A 61 361 127 HOH HOH . 
F 5 HOH A 62 362 33 HOH HOH . 
F 5 HOH A 63 363 137 HOH HOH . 
F 5 HOH A 64 364 14 HOH HOH . 
F 5 HOH A 65 365 5 HOH HOH . 
F 5 HOH A 66 366 189 HOH HOH . 
F 5 HOH A 67 367 9 HOH HOH . 
F 5 HOH A 68 368 238 HOH HOH . 
F 5 HOH A 69 369 126 HOH HOH . 
F 5 HOH A 70 370 112 HOH HOH . 
F 5 HOH A 71 371 15 HOH HOH . 
F 5 HOH A 72 372 101 HOH HOH . 
F 5 HOH A 73 373 63 HOH HOH . 
F 5 HOH A 74 374 56 HOH HOH . 
F 5 HOH A 75 375 29 HOH HOH . 
F 5 HOH A 76 376 45 HOH HOH . 
F 5 HOH A 77 377 116 HOH HOH . 
F 5 HOH A 78 378 16 HOH HOH . 
F 5 HOH A 79 379 64 HOH HOH . 
F 5 HOH A 80 380 158 HOH HOH . 
F 5 HOH A 81 381 22 HOH HOH . 
F 5 HOH A 82 382 55 HOH HOH . 
F 5 HOH A 83 383 28 HOH HOH . 
F 5 HOH A 84 384 182 HOH HOH . 
F 5 HOH A 85 385 11 HOH HOH . 
F 5 HOH A 86 386 147 HOH HOH . 
F 5 HOH A 87 387 292 HOH HOH . 
F 5 HOH A 88 388 261 HOH HOH . 
F 5 HOH A 89 389 119 HOH HOH . 
F 5 HOH A 90 390 47 HOH HOH . 
F 5 HOH A 91 391 36 HOH HOH . 
F 5 HOH A 92 392 95 HOH HOH . 
F 5 HOH A 93 393 154 HOH HOH . 
F 5 HOH A 94 394 42 HOH HOH . 
F 5 HOH A 95 395 100 HOH HOH . 
F 5 HOH A 96 396 160 HOH HOH . 
F 5 HOH A 97 397 156 HOH HOH . 
F 5 HOH A 98 398 43 HOH HOH . 
F 5 HOH A 99 399 197 HOH HOH . 
F 5 HOH A 100 400 48 HOH HOH . 
F 5 HOH A 101 401 19 HOH HOH . 
F 5 HOH A 102 402 40 HOH HOH . 
F 5 HOH A 103 403 130 HOH HOH . 
F 5 HOH A 104 404 86 HOH HOH . 
F 5 HOH A 105 405 92 HOH HOH . 
F 5 HOH A 106 406 153 HOH HOH . 
F 5 HOH A 107 407 155 HOH HOH . 
F 5 HOH A 108 408 39 HOH HOH . 
F 5 HOH A 109 409 66 HOH HOH . 
F 5 HOH A 110 410 221 HOH HOH . 
F 5 HOH A 111 411 20 HOH HOH . 
F 5 HOH A 112 412 25 HOH HOH . 
F 5 HOH A 113 413 89 HOH HOH . 
F 5 HOH A 114 414 106 HOH HOH . 
F 5 HOH A 115 415 281 HOH HOH . 
F 5 HOH A 116 416 77 HOH HOH . 
F 5 HOH A 117 417 193 HOH HOH . 
F 5 HOH A 118 418 6 HOH HOH . 
F 5 HOH A 119 419 232 HOH HOH . 
F 5 HOH A 120 420 239 HOH HOH . 
F 5 HOH A 121 421 23 HOH HOH . 
F 5 HOH A 122 422 291 HOH HOH . 
F 5 HOH A 123 423 107 HOH HOH . 
F 5 HOH A 124 424 264 HOH HOH . 
F 5 HOH A 125 425 17 HOH HOH . 
F 5 HOH A 126 426 24 HOH HOH . 
F 5 HOH A 127 427 110 HOH HOH . 
F 5 HOH A 128 428 124 HOH HOH . 
F 5 HOH A 129 429 149 HOH HOH . 
F 5 HOH A 130 430 70 HOH HOH . 
F 5 HOH A 131 431 227 HOH HOH . 
F 5 HOH A 132 432 167 HOH HOH . 
F 5 HOH A 133 433 12 HOH HOH . 
F 5 HOH A 134 434 108 HOH HOH . 
F 5 HOH A 135 435 200 HOH HOH . 
F 5 HOH A 136 436 87 HOH HOH . 
F 5 HOH A 137 437 105 HOH HOH . 
F 5 HOH A 138 438 259 HOH HOH . 
F 5 HOH A 139 439 151 HOH HOH . 
F 5 HOH A 140 440 177 HOH HOH . 
F 5 HOH A 141 441 8 HOH HOH . 
F 5 HOH A 142 442 84 HOH HOH . 
F 5 HOH A 143 443 237 HOH HOH . 
F 5 HOH A 144 444 152 HOH HOH . 
F 5 HOH A 145 445 98 HOH HOH . 
F 5 HOH A 146 446 139 HOH HOH . 
F 5 HOH A 147 447 258 HOH HOH . 
F 5 HOH A 148 448 250 HOH HOH . 
F 5 HOH A 149 449 96 HOH HOH . 
F 5 HOH A 150 450 218 HOH HOH . 
F 5 HOH A 151 451 219 HOH HOH . 
F 5 HOH A 152 452 183 HOH HOH . 
F 5 HOH A 153 453 122 HOH HOH . 
F 5 HOH A 154 454 58 HOH HOH . 
F 5 HOH A 155 455 272 HOH HOH . 
F 5 HOH A 156 456 294 HOH HOH . 
F 5 HOH A 157 457 223 HOH HOH . 
F 5 HOH A 158 458 53 HOH HOH . 
F 5 HOH A 159 459 179 HOH HOH . 
F 5 HOH A 160 460 226 HOH HOH . 
F 5 HOH A 161 461 94 HOH HOH . 
F 5 HOH A 162 462 80 HOH HOH . 
F 5 HOH A 163 463 134 HOH HOH . 
F 5 HOH A 164 464 146 HOH HOH . 
F 5 HOH A 165 465 289 HOH HOH . 
F 5 HOH A 166 466 131 HOH HOH . 
F 5 HOH A 167 467 222 HOH HOH . 
F 5 HOH A 168 468 233 HOH HOH . 
F 5 HOH A 169 469 97 HOH HOH . 
F 5 HOH A 170 470 136 HOH HOH . 
F 5 HOH A 171 471 228 HOH HOH . 
F 5 HOH A 172 472 273 HOH HOH . 
F 5 HOH A 173 473 165 HOH HOH . 
F 5 HOH A 174 474 283 HOH HOH . 
F 5 HOH A 175 475 173 HOH HOH . 
F 5 HOH A 176 476 166 HOH HOH . 
F 5 HOH A 177 477 140 HOH HOH . 
F 5 HOH A 178 478 282 HOH HOH . 
F 5 HOH A 179 479 270 HOH HOH . 
F 5 HOH A 180 480 83 HOH HOH . 
F 5 HOH A 181 481 135 HOH HOH . 
F 5 HOH A 182 482 277 HOH HOH . 
F 5 HOH A 183 483 37 HOH HOH . 
F 5 HOH A 184 484 67 HOH HOH . 
F 5 HOH A 185 485 69 HOH HOH . 
F 5 HOH A 186 486 61 HOH HOH . 
F 5 HOH A 187 487 194 HOH HOH . 
F 5 HOH A 188 488 168 HOH HOH . 
F 5 HOH A 189 489 104 HOH HOH . 
F 5 HOH A 190 490 247 HOH HOH . 
F 5 HOH A 191 491 203 HOH HOH . 
F 5 HOH A 192 492 162 HOH HOH . 
F 5 HOH A 193 493 170 HOH HOH . 
F 5 HOH A 194 494 172 HOH HOH . 
F 5 HOH A 195 495 148 HOH HOH . 
F 5 HOH A 196 496 145 HOH HOH . 
F 5 HOH A 197 497 181 HOH HOH . 
F 5 HOH A 198 498 188 HOH HOH . 
F 5 HOH A 199 499 265 HOH HOH . 
F 5 HOH A 200 500 184 HOH HOH . 
F 5 HOH A 201 501 213 HOH HOH . 
F 5 HOH A 202 502 143 HOH HOH . 
F 5 HOH A 203 503 52 HOH HOH . 
F 5 HOH A 204 504 186 HOH HOH . 
F 5 HOH A 205 505 132 HOH HOH . 
F 5 HOH A 206 506 220 HOH HOH . 
F 5 HOH A 207 507 142 HOH HOH . 
F 5 HOH A 208 508 90 HOH HOH . 
F 5 HOH A 209 509 242 HOH HOH . 
F 5 HOH A 210 510 234 HOH HOH . 
F 5 HOH A 211 511 211 HOH HOH . 
F 5 HOH A 212 512 129 HOH HOH . 
F 5 HOH A 213 513 30 HOH HOH . 
F 5 HOH A 214 514 164 HOH HOH . 
F 5 HOH A 215 515 169 HOH HOH . 
F 5 HOH A 216 516 202 HOH HOH . 
F 5 HOH A 217 517 118 HOH HOH . 
F 5 HOH A 218 518 141 HOH HOH . 
F 5 HOH A 219 519 190 HOH HOH . 
F 5 HOH A 220 520 230 HOH HOH . 
F 5 HOH A 221 521 240 HOH HOH . 
F 5 HOH A 222 522 251 HOH HOH . 
F 5 HOH A 223 523 150 HOH HOH . 
F 5 HOH A 224 524 93 HOH HOH . 
F 5 HOH A 225 525 65 HOH HOH . 
F 5 HOH A 226 526 244 HOH HOH . 
F 5 HOH A 227 527 208 HOH HOH . 
F 5 HOH A 228 528 88 HOH HOH . 
F 5 HOH A 229 529 99 HOH HOH . 
F 5 HOH A 230 530 293 HOH HOH . 
F 5 HOH A 231 531 260 HOH HOH . 
F 5 HOH A 232 532 199 HOH HOH . 
F 5 HOH A 233 533 262 HOH HOH . 
F 5 HOH A 234 534 74 HOH HOH . 
F 5 HOH A 235 535 171 HOH HOH . 
F 5 HOH A 236 536 288 HOH HOH . 
F 5 HOH A 237 537 257 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 -8.7 4.683 -3.111 0.5 16.15 ? C1 EDO 204 A 1 
HETATM 2 O O1 EDO . . . E 4 -8.243 5.441 -4.246 0.5 15.46 ? O1 EDO 204 A 1 
HETATM 3 C C2 EDO . . . E 4 -9.926 5.348 -2.426 0.5 16.93 ? C2 EDO 204 A 1 
HETATM 4 O O2 EDO . . . E 4 -10.517 4.464 -1.456 0.5 16.97 ? O2 EDO 204 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#