data_5SBX # _model_server_result.job_id N600tkbBuUE04IgwjjOwFg _model_server_result.datetime_utc '2024-11-07 14:34:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SBX # _exptl.entry_id 5SBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.238 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-cyclopentylmethanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.82 _cell.angle_gamma 90 _cell.entry_id 5SBX _cell.length_a 30.958 _cell.length_b 81.943 _cell.length_c 32.218 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C6 H13 N O2 S' _chem_comp.formula_weight 163.238 _chem_comp.id 8BT _chem_comp.mon_nstd_flag . _chem_comp.name N-cyclopentylmethanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SBX _atom_sites.fract_transf_matrix[1][1] 0.032302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8BT A 1 201 201 8BT LIG . C 3 PEG A 1 202 202 PEG PEG . D 4 DMS A 1 203 1 DMS DMS . E 4 DMS A 1 204 2 DMS DMS . F 5 EDO A 1 205 1 EDO EDO . G 6 HOH A 1 301 41 HOH HOH . G 6 HOH A 2 302 32 HOH HOH . G 6 HOH A 3 303 278 HOH HOH . G 6 HOH A 4 304 286 HOH HOH . G 6 HOH A 5 305 71 HOH HOH . G 6 HOH A 6 306 115 HOH HOH . G 6 HOH A 7 307 103 HOH HOH . G 6 HOH A 8 308 192 HOH HOH . G 6 HOH A 9 309 163 HOH HOH . G 6 HOH A 10 310 147 HOH HOH . G 6 HOH A 11 311 256 HOH HOH . G 6 HOH A 12 312 21 HOH HOH . G 6 HOH A 13 313 50 HOH HOH . G 6 HOH A 14 314 175 HOH HOH . G 6 HOH A 15 315 51 HOH HOH . G 6 HOH A 16 316 49 HOH HOH . G 6 HOH A 17 317 180 HOH HOH . G 6 HOH A 18 318 66 HOH HOH . G 6 HOH A 19 319 79 HOH HOH . G 6 HOH A 20 320 46 HOH HOH . G 6 HOH A 21 321 60 HOH HOH . G 6 HOH A 22 322 114 HOH HOH . G 6 HOH A 23 323 137 HOH HOH . G 6 HOH A 24 324 62 HOH HOH . G 6 HOH A 25 325 144 HOH HOH . G 6 HOH A 26 326 85 HOH HOH . G 6 HOH A 27 327 109 HOH HOH . G 6 HOH A 28 328 125 HOH HOH . G 6 HOH A 29 329 120 HOH HOH . G 6 HOH A 30 330 223 HOH HOH . G 6 HOH A 31 331 2 HOH HOH . G 6 HOH A 32 332 110 HOH HOH . G 6 HOH A 33 333 18 HOH HOH . G 6 HOH A 34 334 22 HOH HOH . G 6 HOH A 35 335 13 HOH HOH . G 6 HOH A 36 336 10 HOH HOH . G 6 HOH A 37 337 81 HOH HOH . G 6 HOH A 38 338 35 HOH HOH . G 6 HOH A 39 339 4 HOH HOH . G 6 HOH A 40 340 102 HOH HOH . G 6 HOH A 41 341 31 HOH HOH . G 6 HOH A 42 342 196 HOH HOH . G 6 HOH A 43 343 33 HOH HOH . G 6 HOH A 44 344 1 HOH HOH . G 6 HOH A 45 345 91 HOH HOH . G 6 HOH A 46 346 57 HOH HOH . G 6 HOH A 47 347 34 HOH HOH . G 6 HOH A 48 348 283 HOH HOH . G 6 HOH A 49 349 44 HOH HOH . G 6 HOH A 50 350 160 HOH HOH . G 6 HOH A 51 351 27 HOH HOH . G 6 HOH A 52 352 178 HOH HOH . G 6 HOH A 53 353 193 HOH HOH . G 6 HOH A 54 354 28 HOH HOH . G 6 HOH A 55 355 101 HOH HOH . G 6 HOH A 56 356 68 HOH HOH . G 6 HOH A 57 357 7 HOH HOH . G 6 HOH A 58 358 259 HOH HOH . G 6 HOH A 59 359 205 HOH HOH . G 6 HOH A 60 360 127 HOH HOH . G 6 HOH A 61 361 19 HOH HOH . G 6 HOH A 62 362 63 HOH HOH . G 6 HOH A 63 363 100 HOH HOH . G 6 HOH A 64 364 45 HOH HOH . G 6 HOH A 65 365 5 HOH HOH . G 6 HOH A 66 366 38 HOH HOH . G 6 HOH A 67 367 112 HOH HOH . G 6 HOH A 68 368 55 HOH HOH . G 6 HOH A 69 369 29 HOH HOH . G 6 HOH A 70 370 39 HOH HOH . G 6 HOH A 71 371 95 HOH HOH . G 6 HOH A 72 372 154 HOH HOH . G 6 HOH A 73 373 26 HOH HOH . G 6 HOH A 74 374 174 HOH HOH . G 6 HOH A 75 375 161 HOH HOH . G 6 HOH A 76 376 3 HOH HOH . G 6 HOH A 77 377 126 HOH HOH . G 6 HOH A 78 378 56 HOH HOH . G 6 HOH A 79 379 76 HOH HOH . G 6 HOH A 80 380 159 HOH HOH . G 6 HOH A 81 381 82 HOH HOH . G 6 HOH A 82 382 14 HOH HOH . G 6 HOH A 83 383 16 HOH HOH . G 6 HOH A 84 384 11 HOH HOH . G 6 HOH A 85 385 155 HOH HOH . G 6 HOH A 86 386 119 HOH HOH . G 6 HOH A 87 387 116 HOH HOH . G 6 HOH A 88 388 216 HOH HOH . G 6 HOH A 89 389 54 HOH HOH . G 6 HOH A 90 390 78 HOH HOH . G 6 HOH A 91 391 73 HOH HOH . G 6 HOH A 92 392 263 HOH HOH . G 6 HOH A 93 393 15 HOH HOH . G 6 HOH A 94 394 9 HOH HOH . G 6 HOH A 95 395 227 HOH HOH . G 6 HOH A 96 396 124 HOH HOH . G 6 HOH A 97 397 228 HOH HOH . G 6 HOH A 98 398 226 HOH HOH . G 6 HOH A 99 399 179 HOH HOH . G 6 HOH A 100 400 252 HOH HOH . G 6 HOH A 101 401 48 HOH HOH . G 6 HOH A 102 402 36 HOH HOH . G 6 HOH A 103 403 43 HOH HOH . G 6 HOH A 104 404 72 HOH HOH . G 6 HOH A 105 405 158 HOH HOH . G 6 HOH A 106 406 107 HOH HOH . G 6 HOH A 107 407 139 HOH HOH . G 6 HOH A 108 408 245 HOH HOH . G 6 HOH A 109 409 47 HOH HOH . G 6 HOH A 110 410 177 HOH HOH . G 6 HOH A 111 411 271 HOH HOH . G 6 HOH A 112 412 182 HOH HOH . G 6 HOH A 113 413 261 HOH HOH . G 6 HOH A 114 414 272 HOH HOH . G 6 HOH A 115 415 153 HOH HOH . G 6 HOH A 116 416 218 HOH HOH . G 6 HOH A 117 417 25 HOH HOH . G 6 HOH A 118 418 224 HOH HOH . G 6 HOH A 119 419 40 HOH HOH . G 6 HOH A 120 420 232 HOH HOH . G 6 HOH A 121 421 167 HOH HOH . G 6 HOH A 122 422 6 HOH HOH . G 6 HOH A 123 423 89 HOH HOH . G 6 HOH A 124 424 248 HOH HOH . G 6 HOH A 125 425 86 HOH HOH . G 6 HOH A 126 426 279 HOH HOH . G 6 HOH A 127 427 130 HOH HOH . G 6 HOH A 128 428 289 HOH HOH . G 6 HOH A 129 429 221 HOH HOH . G 6 HOH A 130 430 123 HOH HOH . G 6 HOH A 131 431 20 HOH HOH . G 6 HOH A 132 432 87 HOH HOH . G 6 HOH A 133 433 189 HOH HOH . G 6 HOH A 134 434 121 HOH HOH . G 6 HOH A 135 435 239 HOH HOH . G 6 HOH A 136 436 237 HOH HOH . G 6 HOH A 137 437 92 HOH HOH . G 6 HOH A 138 438 42 HOH HOH . G 6 HOH A 139 439 70 HOH HOH . G 6 HOH A 140 440 24 HOH HOH . G 6 HOH A 141 441 64 HOH HOH . G 6 HOH A 142 442 67 HOH HOH . G 6 HOH A 143 443 156 HOH HOH . G 6 HOH A 144 444 231 HOH HOH . G 6 HOH A 145 445 108 HOH HOH . G 6 HOH A 146 446 200 HOH HOH . G 6 HOH A 147 447 146 HOH HOH . G 6 HOH A 148 448 106 HOH HOH . G 6 HOH A 149 449 264 HOH HOH . G 6 HOH A 150 450 201 HOH HOH . G 6 HOH A 151 451 8 HOH HOH . G 6 HOH A 152 452 149 HOH HOH . G 6 HOH A 153 453 122 HOH HOH . G 6 HOH A 154 454 17 HOH HOH . G 6 HOH A 155 455 23 HOH HOH . G 6 HOH A 156 456 98 HOH HOH . G 6 HOH A 157 457 293 HOH HOH . G 6 HOH A 158 458 12 HOH HOH . G 6 HOH A 159 459 151 HOH HOH . G 6 HOH A 160 460 152 HOH HOH . G 6 HOH A 161 461 77 HOH HOH . G 6 HOH A 162 462 258 HOH HOH . G 6 HOH A 163 463 197 HOH HOH . G 6 HOH A 164 464 220 HOH HOH . G 6 HOH A 165 465 53 HOH HOH . G 6 HOH A 166 466 183 HOH HOH . G 6 HOH A 167 467 84 HOH HOH . G 6 HOH A 168 468 270 HOH HOH . G 6 HOH A 169 469 80 HOH HOH . G 6 HOH A 170 470 96 HOH HOH . G 6 HOH A 171 471 58 HOH HOH . G 6 HOH A 172 472 94 HOH HOH . G 6 HOH A 173 473 105 HOH HOH . G 6 HOH A 174 474 225 HOH HOH . G 6 HOH A 175 475 131 HOH HOH . G 6 HOH A 176 476 281 HOH HOH . G 6 HOH A 177 477 288 HOH HOH . G 6 HOH A 178 478 219 HOH HOH . G 6 HOH A 179 479 233 HOH HOH . G 6 HOH A 180 480 273 HOH HOH . G 6 HOH A 181 481 176 HOH HOH . G 6 HOH A 182 482 222 HOH HOH . G 6 HOH A 183 483 134 HOH HOH . G 6 HOH A 184 484 249 HOH HOH . G 6 HOH A 185 485 140 HOH HOH . G 6 HOH A 186 486 173 HOH HOH . G 6 HOH A 187 487 284 HOH HOH . G 6 HOH A 188 488 191 HOH HOH . G 6 HOH A 189 489 292 HOH HOH . G 6 HOH A 190 490 266 HOH HOH . G 6 HOH A 191 491 185 HOH HOH . G 6 HOH A 192 492 97 HOH HOH . G 6 HOH A 193 493 165 HOH HOH . G 6 HOH A 194 494 136 HOH HOH . G 6 HOH A 195 495 69 HOH HOH . G 6 HOH A 196 496 214 HOH HOH . G 6 HOH A 197 497 111 HOH HOH . G 6 HOH A 198 498 230 HOH HOH . G 6 HOH A 199 499 83 HOH HOH . G 6 HOH A 200 500 166 HOH HOH . G 6 HOH A 201 501 236 HOH HOH . G 6 HOH A 202 502 113 HOH HOH . G 6 HOH A 203 503 241 HOH HOH . G 6 HOH A 204 504 194 HOH HOH . G 6 HOH A 205 505 138 HOH HOH . G 6 HOH A 206 506 290 HOH HOH . G 6 HOH A 207 507 170 HOH HOH . G 6 HOH A 208 508 61 HOH HOH . G 6 HOH A 209 509 184 HOH HOH . G 6 HOH A 210 510 135 HOH HOH . G 6 HOH A 211 511 187 HOH HOH . G 6 HOH A 212 512 37 HOH HOH . G 6 HOH A 213 513 162 HOH HOH . G 6 HOH A 214 514 188 HOH HOH . G 6 HOH A 215 515 204 HOH HOH . G 6 HOH A 216 516 104 HOH HOH . G 6 HOH A 217 517 181 HOH HOH . G 6 HOH A 218 518 247 HOH HOH . G 6 HOH A 219 519 168 HOH HOH . G 6 HOH A 220 520 129 HOH HOH . G 6 HOH A 221 521 172 HOH HOH . G 6 HOH A 222 522 148 HOH HOH . G 6 HOH A 223 523 59 HOH HOH . G 6 HOH A 224 524 133 HOH HOH . G 6 HOH A 225 525 145 HOH HOH . G 6 HOH A 226 526 234 HOH HOH . G 6 HOH A 227 527 209 HOH HOH . G 6 HOH A 228 528 242 HOH HOH . G 6 HOH A 229 529 132 HOH HOH . G 6 HOH A 230 530 143 HOH HOH . G 6 HOH A 231 531 186 HOH HOH . G 6 HOH A 232 532 88 HOH HOH . G 6 HOH A 233 533 30 HOH HOH . G 6 HOH A 234 534 142 HOH HOH . G 6 HOH A 235 535 203 HOH HOH . G 6 HOH A 236 536 164 HOH HOH . G 6 HOH A 237 537 265 HOH HOH . G 6 HOH A 238 538 118 HOH HOH . G 6 HOH A 239 539 202 HOH HOH . G 6 HOH A 240 540 90 HOH HOH . G 6 HOH A 241 541 169 HOH HOH . G 6 HOH A 242 542 141 HOH HOH . G 6 HOH A 243 543 211 HOH HOH . G 6 HOH A 244 544 251 HOH HOH . G 6 HOH A 245 545 99 HOH HOH . G 6 HOH A 246 546 65 HOH HOH . G 6 HOH A 247 547 190 HOH HOH . G 6 HOH A 248 548 198 HOH HOH . G 6 HOH A 249 549 244 HOH HOH . G 6 HOH A 250 550 150 HOH HOH . G 6 HOH A 251 551 93 HOH HOH . G 6 HOH A 252 552 171 HOH HOH . G 6 HOH A 253 553 199 HOH HOH . G 6 HOH A 254 554 74 HOH HOH . G 6 HOH A 255 555 291 HOH HOH . G 6 HOH A 256 556 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 8BT . . . B 2 -1.459 4.468 -7.744 0.28 10.5 ? C10 8BT 201 A 1 HETATM 2 C C01 8BT . . . B 2 -3.943 4.179 -10.521 0.28 10.04 ? C01 8BT 201 A 1 HETATM 3 S S02 8BT . . . B 2 -2.459 3.275 -11.003 0.28 10.29 ? S02 8BT 201 A 1 HETATM 4 O O03 8BT . . . B 2 -2.665 1.854 -11.167 0.28 9.93 ? O03 8BT 201 A 1 HETATM 5 O O04 8BT . . . B 2 -2.014 3.613 -12.36 0.28 10.41 ? O04 8BT 201 A 1 HETATM 6 N N05 8BT . . . B 2 -1.172 3.535 -9.908 0.28 10.55 ? N05 8BT 201 A 1 HETATM 7 C C06 8BT . . . B 2 -1.371 3.319 -8.483 0.28 10.34 ? C06 8BT 201 A 1 HETATM 8 C C07 8BT . . . B 2 -0.182 2.419 -7.773 0.28 10.15 ? C07 8BT 201 A 1 HETATM 9 C C08 8BT . . . B 2 -0.52 2.557 -6.473 0.28 9.95 ? C08 8BT 201 A 1 HETATM 10 C C09 8BT . . . B 2 -1.04 4.046 -6.259 0.28 10.23 ? C09 8BT 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #