data_5SBZ # _model_server_result.job_id Pld7AoOj4utzt_mr1cWClQ _model_server_result.datetime_utc '2025-06-23 18:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5SBZ # _exptl.entry_id 5SBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.9 _cell.angle_gamma 90 _cell.entry_id 5SBZ _cell.length_a 30.942 _cell.length_b 82.239 _cell.length_c 32.234 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5SBZ _atom_sites.fract_transf_matrix[1][1] 0.032319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017112 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K0D A 1 201 201 K0D LIG . C 3 DMS A 1 202 1 DMS DMS . D 3 DMS A 1 203 2 DMS DMS . E 3 DMS A 1 204 3 DMS DMS . F 4 EDO A 1 205 1 EDO EDO . G 5 HOH A 1 301 32 HOH HOH . G 5 HOH A 2 302 278 HOH HOH . G 5 HOH A 3 303 293 HOH HOH . G 5 HOH A 4 304 163 HOH HOH . G 5 HOH A 5 305 71 HOH HOH . G 5 HOH A 6 306 115 HOH HOH . G 5 HOH A 7 307 175 HOH HOH . G 5 HOH A 8 308 114 HOH HOH . G 5 HOH A 9 309 103 HOH HOH . G 5 HOH A 10 310 126 HOH HOH . G 5 HOH A 11 311 21 HOH HOH . G 5 HOH A 12 312 50 HOH HOH . G 5 HOH A 13 313 60 HOH HOH . G 5 HOH A 14 314 268 HOH HOH . G 5 HOH A 15 315 147 HOH HOH . G 5 HOH A 16 316 62 HOH HOH . G 5 HOH A 17 317 91 HOH HOH . G 5 HOH A 18 318 102 HOH HOH . G 5 HOH A 19 319 180 HOH HOH . G 5 HOH A 20 320 31 HOH HOH . G 5 HOH A 21 321 79 HOH HOH . G 5 HOH A 22 322 110 HOH HOH . G 5 HOH A 23 323 49 HOH HOH . G 5 HOH A 24 324 137 HOH HOH . G 5 HOH A 25 325 2 HOH HOH . G 5 HOH A 26 326 178 HOH HOH . G 5 HOH A 27 327 22 HOH HOH . G 5 HOH A 28 328 41 HOH HOH . G 5 HOH A 29 329 51 HOH HOH . G 5 HOH A 30 330 120 HOH HOH . G 5 HOH A 31 331 218 HOH HOH . G 5 HOH A 32 332 144 HOH HOH . G 5 HOH A 33 333 33 HOH HOH . G 5 HOH A 34 334 101 HOH HOH . G 5 HOH A 35 335 295 HOH HOH . G 5 HOH A 36 336 109 HOH HOH . G 5 HOH A 37 337 34 HOH HOH . G 5 HOH A 38 338 18 HOH HOH . G 5 HOH A 39 339 192 HOH HOH . G 5 HOH A 40 340 13 HOH HOH . G 5 HOH A 41 341 1 HOH HOH . G 5 HOH A 42 342 125 HOH HOH . G 5 HOH A 43 343 205 HOH HOH . G 5 HOH A 44 344 127 HOH HOH . G 5 HOH A 45 345 44 HOH HOH . G 5 HOH A 46 346 4 HOH HOH . G 5 HOH A 47 347 81 HOH HOH . G 5 HOH A 48 348 76 HOH HOH . G 5 HOH A 49 349 128 HOH HOH . G 5 HOH A 50 350 85 HOH HOH . G 5 HOH A 51 351 5 HOH HOH . G 5 HOH A 52 352 161 HOH HOH . G 5 HOH A 53 353 26 HOH HOH . G 5 HOH A 54 354 63 HOH HOH . G 5 HOH A 55 355 220 HOH HOH . G 5 HOH A 56 356 7 HOH HOH . G 5 HOH A 57 357 255 HOH HOH . G 5 HOH A 58 358 10 HOH HOH . G 5 HOH A 59 359 259 HOH HOH . G 5 HOH A 60 360 160 HOH HOH . G 5 HOH A 61 361 195 HOH HOH . G 5 HOH A 62 362 82 HOH HOH . G 5 HOH A 63 363 68 HOH HOH . G 5 HOH A 64 364 38 HOH HOH . G 5 HOH A 65 365 29 HOH HOH . G 5 HOH A 66 366 19 HOH HOH . G 5 HOH A 67 367 27 HOH HOH . G 5 HOH A 68 368 124 HOH HOH . G 5 HOH A 69 369 3 HOH HOH . G 5 HOH A 70 370 15 HOH HOH . G 5 HOH A 71 371 57 HOH HOH . G 5 HOH A 72 372 231 HOH HOH . G 5 HOH A 73 373 45 HOH HOH . G 5 HOH A 74 374 39 HOH HOH . G 5 HOH A 75 375 28 HOH HOH . G 5 HOH A 76 376 56 HOH HOH . G 5 HOH A 77 377 193 HOH HOH . G 5 HOH A 78 378 252 HOH HOH . G 5 HOH A 79 379 159 HOH HOH . G 5 HOH A 80 380 14 HOH HOH . G 5 HOH A 81 381 73 HOH HOH . G 5 HOH A 82 382 266 HOH HOH . G 5 HOH A 83 383 112 HOH HOH . G 5 HOH A 84 384 100 HOH HOH . G 5 HOH A 85 385 11 HOH HOH . G 5 HOH A 86 386 54 HOH HOH . G 5 HOH A 87 387 78 HOH HOH . G 5 HOH A 88 388 66 HOH HOH . G 5 HOH A 89 389 223 HOH HOH . G 5 HOH A 90 390 46 HOH HOH . G 5 HOH A 91 391 196 HOH HOH . G 5 HOH A 92 392 182 HOH HOH . G 5 HOH A 93 393 155 HOH HOH . G 5 HOH A 94 394 47 HOH HOH . G 5 HOH A 95 395 216 HOH HOH . G 5 HOH A 96 396 158 HOH HOH . G 5 HOH A 97 397 55 HOH HOH . G 5 HOH A 98 398 256 HOH HOH . G 5 HOH A 99 399 264 HOH HOH . G 5 HOH A 100 400 9 HOH HOH . G 5 HOH A 101 401 35 HOH HOH . G 5 HOH A 102 402 154 HOH HOH . G 5 HOH A 103 403 224 HOH HOH . G 5 HOH A 104 404 16 HOH HOH . G 5 HOH A 105 405 212 HOH HOH . G 5 HOH A 106 406 36 HOH HOH . G 5 HOH A 107 407 121 HOH HOH . G 5 HOH A 108 408 226 HOH HOH . G 5 HOH A 109 409 279 HOH HOH . G 5 HOH A 110 410 174 HOH HOH . G 5 HOH A 111 411 238 HOH HOH . G 5 HOH A 112 412 43 HOH HOH . G 5 HOH A 113 413 107 HOH HOH . G 5 HOH A 114 414 228 HOH HOH . G 5 HOH A 115 415 233 HOH HOH . G 5 HOH A 116 416 95 HOH HOH . G 5 HOH A 117 417 261 HOH HOH . G 5 HOH A 118 418 116 HOH HOH . G 5 HOH A 119 419 130 HOH HOH . G 5 HOH A 120 420 106 HOH HOH . G 5 HOH A 121 421 146 HOH HOH . G 5 HOH A 122 422 153 HOH HOH . G 5 HOH A 123 423 151 HOH HOH . G 5 HOH A 124 424 272 HOH HOH . G 5 HOH A 125 425 42 HOH HOH . G 5 HOH A 126 426 25 HOH HOH . G 5 HOH A 127 427 221 HOH HOH . G 5 HOH A 128 428 227 HOH HOH . G 5 HOH A 129 429 87 HOH HOH . G 5 HOH A 130 430 200 HOH HOH . G 5 HOH A 131 431 167 HOH HOH . G 5 HOH A 132 432 48 HOH HOH . G 5 HOH A 133 433 123 HOH HOH . G 5 HOH A 134 434 67 HOH HOH . G 5 HOH A 135 435 72 HOH HOH . G 5 HOH A 136 436 271 HOH HOH . G 5 HOH A 137 437 8 HOH HOH . G 5 HOH A 138 438 232 HOH HOH . G 5 HOH A 139 439 6 HOH HOH . G 5 HOH A 140 440 64 HOH HOH . G 5 HOH A 141 441 139 HOH HOH . G 5 HOH A 142 442 40 HOH HOH . G 5 HOH A 143 443 179 HOH HOH . G 5 HOH A 144 444 20 HOH HOH . G 5 HOH A 145 445 237 HOH HOH . G 5 HOH A 146 446 149 HOH HOH . G 5 HOH A 147 447 24 HOH HOH . G 5 HOH A 148 448 70 HOH HOH . G 5 HOH A 149 449 86 HOH HOH . G 5 HOH A 150 450 122 HOH HOH . G 5 HOH A 151 451 156 HOH HOH . G 5 HOH A 152 452 89 HOH HOH . G 5 HOH A 153 453 92 HOH HOH . G 5 HOH A 154 454 189 HOH HOH . G 5 HOH A 155 455 270 HOH HOH . G 5 HOH A 156 456 152 HOH HOH . G 5 HOH A 157 457 17 HOH HOH . G 5 HOH A 158 458 177 HOH HOH . G 5 HOH A 159 459 12 HOH HOH . G 5 HOH A 160 460 263 HOH HOH . G 5 HOH A 161 461 23 HOH HOH . G 5 HOH A 162 462 201 HOH HOH . G 5 HOH A 163 463 108 HOH HOH . G 5 HOH A 164 464 58 HOH HOH . G 5 HOH A 165 465 77 HOH HOH . G 5 HOH A 166 466 119 HOH HOH . G 5 HOH A 167 467 183 HOH HOH . G 5 HOH A 168 468 291 HOH HOH . G 5 HOH A 169 469 207 HOH HOH . G 5 HOH A 170 470 197 HOH HOH . G 5 HOH A 171 471 98 HOH HOH . G 5 HOH A 172 472 274 HOH HOH . G 5 HOH A 173 473 53 HOH HOH . G 5 HOH A 174 474 84 HOH HOH . G 5 HOH A 175 475 96 HOH HOH . G 5 HOH A 176 476 80 HOH HOH . G 5 HOH A 177 477 94 HOH HOH . G 5 HOH A 178 478 176 HOH HOH . G 5 HOH A 179 479 105 HOH HOH . G 5 HOH A 180 480 284 HOH HOH . G 5 HOH A 181 481 292 HOH HOH . G 5 HOH A 182 482 131 HOH HOH . G 5 HOH A 183 483 225 HOH HOH . G 5 HOH A 184 484 222 HOH HOH . G 5 HOH A 185 485 281 HOH HOH . G 5 HOH A 186 486 134 HOH HOH . G 5 HOH A 187 487 140 HOH HOH . G 5 HOH A 188 488 248 HOH HOH . G 5 HOH A 189 489 273 HOH HOH . G 5 HOH A 190 490 258 HOH HOH . G 5 HOH A 191 491 219 HOH HOH . G 5 HOH A 192 492 165 HOH HOH . G 5 HOH A 193 493 191 HOH HOH . G 5 HOH A 194 494 173 HOH HOH . G 5 HOH A 195 495 52 HOH HOH . G 5 HOH A 196 496 249 HOH HOH . G 5 HOH A 197 497 166 HOH HOH . G 5 HOH A 198 498 69 HOH HOH . G 5 HOH A 199 499 111 HOH HOH . G 5 HOH A 200 500 240 HOH HOH . G 5 HOH A 201 501 230 HOH HOH . G 5 HOH A 202 502 97 HOH HOH . G 5 HOH A 203 503 136 HOH HOH . G 5 HOH A 204 504 61 HOH HOH . G 5 HOH A 205 505 113 HOH HOH . G 5 HOH A 206 506 133 HOH HOH . G 5 HOH A 207 507 83 HOH HOH . G 5 HOH A 208 508 185 HOH HOH . G 5 HOH A 209 509 194 HOH HOH . G 5 HOH A 210 510 282 HOH HOH . G 5 HOH A 211 511 170 HOH HOH . G 5 HOH A 212 512 236 HOH HOH . G 5 HOH A 213 513 241 HOH HOH . G 5 HOH A 214 514 290 HOH HOH . G 5 HOH A 215 515 138 HOH HOH . G 5 HOH A 216 516 214 HOH HOH . G 5 HOH A 217 517 184 HOH HOH . G 5 HOH A 218 518 135 HOH HOH . G 5 HOH A 219 519 162 HOH HOH . G 5 HOH A 220 520 288 HOH HOH . G 5 HOH A 221 521 37 HOH HOH . G 5 HOH A 222 522 145 HOH HOH . G 5 HOH A 223 523 181 HOH HOH . G 5 HOH A 224 524 129 HOH HOH . G 5 HOH A 225 525 104 HOH HOH . G 5 HOH A 226 526 187 HOH HOH . G 5 HOH A 227 527 275 HOH HOH . G 5 HOH A 228 528 188 HOH HOH . G 5 HOH A 229 529 172 HOH HOH . G 5 HOH A 230 530 148 HOH HOH . G 5 HOH A 231 531 247 HOH HOH . G 5 HOH A 232 532 59 HOH HOH . G 5 HOH A 233 533 168 HOH HOH . G 5 HOH A 234 534 213 HOH HOH . G 5 HOH A 235 535 88 HOH HOH . G 5 HOH A 236 536 206 HOH HOH . G 5 HOH A 237 537 209 HOH HOH . G 5 HOH A 238 538 265 HOH HOH . G 5 HOH A 239 539 143 HOH HOH . G 5 HOH A 240 540 204 HOH HOH . G 5 HOH A 241 541 169 HOH HOH . G 5 HOH A 242 542 287 HOH HOH . G 5 HOH A 243 543 132 HOH HOH . G 5 HOH A 244 544 253 HOH HOH . G 5 HOH A 245 545 203 HOH HOH . G 5 HOH A 246 546 164 HOH HOH . G 5 HOH A 247 547 90 HOH HOH . G 5 HOH A 248 548 118 HOH HOH . G 5 HOH A 249 549 142 HOH HOH . G 5 HOH A 250 550 242 HOH HOH . G 5 HOH A 251 551 30 HOH HOH . G 5 HOH A 252 552 294 HOH HOH . G 5 HOH A 253 553 244 HOH HOH . G 5 HOH A 254 554 202 HOH HOH . G 5 HOH A 255 555 186 HOH HOH . G 5 HOH A 256 556 234 HOH HOH . G 5 HOH A 257 557 211 HOH HOH . G 5 HOH A 258 558 141 HOH HOH . G 5 HOH A 259 559 277 HOH HOH . G 5 HOH A 260 560 65 HOH HOH . G 5 HOH A 261 561 251 HOH HOH . G 5 HOH A 262 562 198 HOH HOH . G 5 HOH A 263 563 190 HOH HOH . G 5 HOH A 264 564 208 HOH HOH . G 5 HOH A 265 565 99 HOH HOH . G 5 HOH A 266 566 93 HOH HOH . G 5 HOH A 267 567 262 HOH HOH . G 5 HOH A 268 568 150 HOH HOH . G 5 HOH A 269 569 171 HOH HOH . G 5 HOH A 270 570 289 HOH HOH . G 5 HOH A 271 571 199 HOH HOH . G 5 HOH A 272 572 74 HOH HOH . G 5 HOH A 273 573 246 HOH HOH . G 5 HOH A 274 574 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 3 13.442 14.804 -7.501 0.5 24 ? S DMS 204 A 1 HETATM 2 O O DMS . . . E 3 13.899 14.215 -6.213 0.5 23 ? O DMS 204 A 1 HETATM 3 C C1 DMS . . . E 3 14.194 13.802 -8.739 0.5 23.48 ? C1 DMS 204 A 1 HETATM 4 C C2 DMS . . . E 3 14.434 16.242 -7.694 0.5 23.97 ? C2 DMS 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #