data_5SC0 # _model_server_result.job_id 0LHCSrRqi9wFbG_s2wOTjg _model_server_result.datetime_utc '2024-11-22 02:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 5SC0 # _exptl.entry_id 5SC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.88 _cell.angle_gamma 90 _cell.entry_id 5SC0 _cell.length_a 31.028 _cell.length_b 82.213 _cell.length_c 32.277 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 5SC0 _atom_sites.fract_transf_matrix[1][1] 0.032229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01705 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T0Y A 1 201 201 T0Y LIG . C 3 DMS A 1 202 1 DMS DMS . D 3 DMS A 1 203 2 DMS DMS . E 3 DMS A 1 204 3 DMS DMS . F 4 EDO A 1 205 1 EDO EDO . G 4 EDO A 1 206 2 EDO EDO . H 4 EDO A 1 207 3 EDO EDO . I 5 HOH A 1 301 32 HOH HOH . I 5 HOH A 2 302 278 HOH HOH . I 5 HOH A 3 303 229 HOH HOH . I 5 HOH A 4 304 217 HOH HOH . I 5 HOH A 5 305 71 HOH HOH . I 5 HOH A 6 306 250 HOH HOH . I 5 HOH A 7 307 192 HOH HOH . I 5 HOH A 8 308 147 HOH HOH . I 5 HOH A 9 309 163 HOH HOH . I 5 HOH A 10 310 66 HOH HOH . I 5 HOH A 11 311 114 HOH HOH . I 5 HOH A 12 312 126 HOH HOH . I 5 HOH A 13 313 103 HOH HOH . I 5 HOH A 14 314 21 HOH HOH . I 5 HOH A 15 315 50 HOH HOH . I 5 HOH A 16 316 175 HOH HOH . I 5 HOH A 17 317 125 HOH HOH . I 5 HOH A 18 318 115 HOH HOH . I 5 HOH A 19 319 49 HOH HOH . I 5 HOH A 20 320 109 HOH HOH . I 5 HOH A 21 321 238 HOH HOH . I 5 HOH A 22 322 137 HOH HOH . I 5 HOH A 23 323 180 HOH HOH . I 5 HOH A 24 324 60 HOH HOH . I 5 HOH A 25 325 41 HOH HOH . I 5 HOH A 26 326 102 HOH HOH . I 5 HOH A 27 327 31 HOH HOH . I 5 HOH A 28 328 51 HOH HOH . I 5 HOH A 29 329 33 HOH HOH . I 5 HOH A 30 330 18 HOH HOH . I 5 HOH A 31 331 144 HOH HOH . I 5 HOH A 32 332 223 HOH HOH . I 5 HOH A 33 333 254 HOH HOH . I 5 HOH A 34 334 100 HOH HOH . I 5 HOH A 35 335 233 HOH HOH . I 5 HOH A 36 336 68 HOH HOH . I 5 HOH A 37 337 2 HOH HOH . I 5 HOH A 38 338 263 HOH HOH . I 5 HOH A 39 339 79 HOH HOH . I 5 HOH A 40 340 120 HOH HOH . I 5 HOH A 41 341 1 HOH HOH . I 5 HOH A 42 342 205 HOH HOH . I 5 HOH A 43 343 218 HOH HOH . I 5 HOH A 44 344 110 HOH HOH . I 5 HOH A 45 345 210 HOH HOH . I 5 HOH A 46 346 22 HOH HOH . I 5 HOH A 47 347 91 HOH HOH . I 5 HOH A 48 348 13 HOH HOH . I 5 HOH A 49 349 85 HOH HOH . I 5 HOH A 50 350 5 HOH HOH . I 5 HOH A 51 351 4 HOH HOH . I 5 HOH A 52 352 57 HOH HOH . I 5 HOH A 53 353 46 HOH HOH . I 5 HOH A 54 354 81 HOH HOH . I 5 HOH A 55 355 160 HOH HOH . I 5 HOH A 56 356 62 HOH HOH . I 5 HOH A 57 357 38 HOH HOH . I 5 HOH A 58 358 10 HOH HOH . I 5 HOH A 59 359 34 HOH HOH . I 5 HOH A 60 360 26 HOH HOH . I 5 HOH A 61 361 27 HOH HOH . I 5 HOH A 62 362 268 HOH HOH . I 5 HOH A 63 363 269 HOH HOH . I 5 HOH A 64 364 29 HOH HOH . I 5 HOH A 65 365 215 HOH HOH . I 5 HOH A 66 366 76 HOH HOH . I 5 HOH A 67 367 7 HOH HOH . I 5 HOH A 68 368 128 HOH HOH . I 5 HOH A 69 369 28 HOH HOH . I 5 HOH A 70 370 178 HOH HOH . I 5 HOH A 71 371 112 HOH HOH . I 5 HOH A 72 372 54 HOH HOH . I 5 HOH A 73 373 45 HOH HOH . I 5 HOH A 74 374 124 HOH HOH . I 5 HOH A 75 375 63 HOH HOH . I 5 HOH A 76 376 14 HOH HOH . I 5 HOH A 77 377 155 HOH HOH . I 5 HOH A 78 378 35 HOH HOH . I 5 HOH A 79 379 44 HOH HOH . I 5 HOH A 80 380 116 HOH HOH . I 5 HOH A 81 381 127 HOH HOH . I 5 HOH A 82 382 55 HOH HOH . I 5 HOH A 83 383 3 HOH HOH . I 5 HOH A 84 384 19 HOH HOH . I 5 HOH A 85 385 195 HOH HOH . I 5 HOH A 86 386 259 HOH HOH . I 5 HOH A 87 387 275 HOH HOH . I 5 HOH A 88 388 117 HOH HOH . I 5 HOH A 89 389 159 HOH HOH . I 5 HOH A 90 390 206 HOH HOH . I 5 HOH A 91 391 95 HOH HOH . I 5 HOH A 92 392 196 HOH HOH . I 5 HOH A 93 393 11 HOH HOH . I 5 HOH A 94 394 39 HOH HOH . I 5 HOH A 95 395 75 HOH HOH . I 5 HOH A 96 396 15 HOH HOH . I 5 HOH A 97 397 182 HOH HOH . I 5 HOH A 98 398 78 HOH HOH . I 5 HOH A 99 399 56 HOH HOH . I 5 HOH A 100 400 146 HOH HOH . I 5 HOH A 101 401 226 HOH HOH . I 5 HOH A 102 402 174 HOH HOH . I 5 HOH A 103 403 82 HOH HOH . I 5 HOH A 104 404 73 HOH HOH . I 5 HOH A 105 405 36 HOH HOH . I 5 HOH A 106 406 154 HOH HOH . I 5 HOH A 107 407 16 HOH HOH . I 5 HOH A 108 408 101 HOH HOH . I 5 HOH A 109 409 158 HOH HOH . I 5 HOH A 110 410 255 HOH HOH . I 5 HOH A 111 411 43 HOH HOH . I 5 HOH A 112 412 231 HOH HOH . I 5 HOH A 113 413 121 HOH HOH . I 5 HOH A 114 414 48 HOH HOH . I 5 HOH A 115 415 212 HOH HOH . I 5 HOH A 116 416 9 HOH HOH . I 5 HOH A 117 417 107 HOH HOH . I 5 HOH A 118 418 228 HOH HOH . I 5 HOH A 119 419 47 HOH HOH . I 5 HOH A 120 420 64 HOH HOH . I 5 HOH A 121 421 25 HOH HOH . I 5 HOH A 122 422 161 HOH HOH . I 5 HOH A 123 423 280 HOH HOH . I 5 HOH A 124 424 261 HOH HOH . I 5 HOH A 125 425 245 HOH HOH . I 5 HOH A 126 426 279 HOH HOH . I 5 HOH A 127 427 86 HOH HOH . I 5 HOH A 128 428 232 HOH HOH . I 5 HOH A 129 429 193 HOH HOH . I 5 HOH A 130 430 177 HOH HOH . I 5 HOH A 131 431 237 HOH HOH . I 5 HOH A 132 432 42 HOH HOH . I 5 HOH A 133 433 67 HOH HOH . I 5 HOH A 134 434 123 HOH HOH . I 5 HOH A 135 435 40 HOH HOH . I 5 HOH A 136 436 227 HOH HOH . I 5 HOH A 137 437 153 HOH HOH . I 5 HOH A 138 438 6 HOH HOH . I 5 HOH A 139 439 252 HOH HOH . I 5 HOH A 140 440 167 HOH HOH . I 5 HOH A 141 441 139 HOH HOH . I 5 HOH A 142 442 179 HOH HOH . I 5 HOH A 143 443 271 HOH HOH . I 5 HOH A 144 444 24 HOH HOH . I 5 HOH A 145 445 216 HOH HOH . I 5 HOH A 146 446 106 HOH HOH . I 5 HOH A 147 447 272 HOH HOH . I 5 HOH A 148 448 224 HOH HOH . I 5 HOH A 149 449 17 HOH HOH . I 5 HOH A 150 450 200 HOH HOH . I 5 HOH A 151 451 197 HOH HOH . I 5 HOH A 152 452 183 HOH HOH . I 5 HOH A 153 453 256 HOH HOH . I 5 HOH A 154 454 87 HOH HOH . I 5 HOH A 155 455 122 HOH HOH . I 5 HOH A 156 456 189 HOH HOH . I 5 HOH A 157 457 89 HOH HOH . I 5 HOH A 158 458 72 HOH HOH . I 5 HOH A 159 459 20 HOH HOH . I 5 HOH A 160 460 157 HOH HOH . I 5 HOH A 161 461 221 HOH HOH . I 5 HOH A 162 462 239 HOH HOH . I 5 HOH A 163 463 130 HOH HOH . I 5 HOH A 164 464 264 HOH HOH . I 5 HOH A 165 465 70 HOH HOH . I 5 HOH A 166 466 23 HOH HOH . I 5 HOH A 167 467 156 HOH HOH . I 5 HOH A 168 468 207 HOH HOH . I 5 HOH A 169 469 84 HOH HOH . I 5 HOH A 170 470 8 HOH HOH . I 5 HOH A 171 471 58 HOH HOH . I 5 HOH A 172 472 92 HOH HOH . I 5 HOH A 173 473 12 HOH HOH . I 5 HOH A 174 474 149 HOH HOH . I 5 HOH A 175 475 270 HOH HOH . I 5 HOH A 176 476 105 HOH HOH . I 5 HOH A 177 477 152 HOH HOH . I 5 HOH A 178 478 119 HOH HOH . I 5 HOH A 179 479 108 HOH HOH . I 5 HOH A 180 480 201 HOH HOH . I 5 HOH A 181 481 94 HOH HOH . I 5 HOH A 182 482 53 HOH HOH . I 5 HOH A 183 483 80 HOH HOH . I 5 HOH A 184 484 96 HOH HOH . I 5 HOH A 185 485 176 HOH HOH . I 5 HOH A 186 486 284 HOH HOH . I 5 HOH A 187 487 282 HOH HOH . I 5 HOH A 188 488 131 HOH HOH . I 5 HOH A 189 489 225 HOH HOH . I 5 HOH A 190 490 98 HOH HOH . I 5 HOH A 191 491 274 HOH HOH . I 5 HOH A 192 492 140 HOH HOH . I 5 HOH A 193 493 222 HOH HOH . I 5 HOH A 194 494 134 HOH HOH . I 5 HOH A 195 495 273 HOH HOH . I 5 HOH A 196 496 281 HOH HOH . I 5 HOH A 197 497 276 HOH HOH . I 5 HOH A 198 498 243 HOH HOH . I 5 HOH A 199 499 258 HOH HOH . I 5 HOH A 200 500 219 HOH HOH . I 5 HOH A 201 501 52 HOH HOH . I 5 HOH A 202 502 191 HOH HOH . I 5 HOH A 203 503 165 HOH HOH . I 5 HOH A 204 504 188 HOH HOH . I 5 HOH A 205 505 173 HOH HOH . I 5 HOH A 206 506 69 HOH HOH . I 5 HOH A 207 507 204 HOH HOH . I 5 HOH A 208 508 249 HOH HOH . I 5 HOH A 209 509 136 HOH HOH . I 5 HOH A 210 510 235 HOH HOH . I 5 HOH A 211 511 286 HOH HOH . I 5 HOH A 212 512 230 HOH HOH . I 5 HOH A 213 513 248 HOH HOH . I 5 HOH A 214 514 236 HOH HOH . I 5 HOH A 215 515 240 HOH HOH . I 5 HOH A 216 516 166 HOH HOH . I 5 HOH A 217 517 214 HOH HOH . I 5 HOH A 218 518 111 HOH HOH . I 5 HOH A 219 519 194 HOH HOH . I 5 HOH A 220 520 138 HOH HOH . I 5 HOH A 221 521 83 HOH HOH . I 5 HOH A 222 522 283 HOH HOH . I 5 HOH A 223 523 267 HOH HOH . I 5 HOH A 224 524 170 HOH HOH . I 5 HOH A 225 525 133 HOH HOH . I 5 HOH A 226 526 113 HOH HOH . I 5 HOH A 227 527 37 HOH HOH . I 5 HOH A 228 528 185 HOH HOH . I 5 HOH A 229 529 135 HOH HOH . I 5 HOH A 230 530 184 HOH HOH . I 5 HOH A 231 531 61 HOH HOH . I 5 HOH A 232 532 168 HOH HOH . I 5 HOH A 233 533 162 HOH HOH . I 5 HOH A 234 534 241 HOH HOH . I 5 HOH A 235 535 181 HOH HOH . I 5 HOH A 236 536 172 HOH HOH . I 5 HOH A 237 537 145 HOH HOH . I 5 HOH A 238 538 104 HOH HOH . I 5 HOH A 239 539 59 HOH HOH . I 5 HOH A 240 540 169 HOH HOH . I 5 HOH A 241 541 247 HOH HOH . I 5 HOH A 242 542 129 HOH HOH . I 5 HOH A 243 543 213 HOH HOH . I 5 HOH A 244 544 253 HOH HOH . I 5 HOH A 245 545 143 HOH HOH . I 5 HOH A 246 546 187 HOH HOH . I 5 HOH A 247 547 285 HOH HOH . I 5 HOH A 248 548 164 HOH HOH . I 5 HOH A 249 549 287 HOH HOH . I 5 HOH A 250 550 186 HOH HOH . I 5 HOH A 251 551 203 HOH HOH . I 5 HOH A 252 552 234 HOH HOH . I 5 HOH A 253 553 209 HOH HOH . I 5 HOH A 254 554 118 HOH HOH . I 5 HOH A 255 555 142 HOH HOH . I 5 HOH A 256 556 90 HOH HOH . I 5 HOH A 257 557 202 HOH HOH . I 5 HOH A 258 558 30 HOH HOH . I 5 HOH A 259 559 88 HOH HOH . I 5 HOH A 260 560 211 HOH HOH . I 5 HOH A 261 561 141 HOH HOH . I 5 HOH A 262 562 251 HOH HOH . I 5 HOH A 263 563 65 HOH HOH . I 5 HOH A 264 564 198 HOH HOH . I 5 HOH A 265 565 244 HOH HOH . I 5 HOH A 266 566 262 HOH HOH . I 5 HOH A 267 567 208 HOH HOH . I 5 HOH A 268 568 93 HOH HOH . I 5 HOH A 269 569 190 HOH HOH . I 5 HOH A 270 570 150 HOH HOH . I 5 HOH A 271 571 99 HOH HOH . I 5 HOH A 272 572 132 HOH HOH . I 5 HOH A 273 573 277 HOH HOH . I 5 HOH A 274 574 288 HOH HOH . I 5 HOH A 275 575 171 HOH HOH . I 5 HOH A 276 576 74 HOH HOH . I 5 HOH A 277 577 199 HOH HOH . I 5 HOH A 278 578 246 HOH HOH . I 5 HOH A 279 579 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . G 4 -0.926 2.654 -6.438 0.5 9.62 ? C1 EDO 206 A 1 HETATM 2 C C1 EDO . B . G 4 -0.372 2.926 -6.471 0.5 10.61 ? C1 EDO 206 A 1 HETATM 3 O O1 EDO . A . G 4 -1.124 4 -6.036 0.5 10.56 ? O1 EDO 206 A 1 HETATM 4 O O1 EDO . B . G 4 1.019 3.007 -6.209 0.5 11.35 ? O1 EDO 206 A 1 HETATM 5 C C2 EDO . A . G 4 0.071 2.441 -7.515 0.5 10.21 ? C2 EDO 206 A 1 HETATM 6 C C2 EDO . B . G 4 -0.451 2.121 -7.664 0.5 11.05 ? C2 EDO 206 A 1 HETATM 7 O O2 EDO . A . G 4 -0.423 3.155 -8.629 0.5 11.89 ? O2 EDO 206 A 1 HETATM 8 O O2 EDO . B . G 4 -1.634 1.467 -7.382 0.5 11.52 ? O2 EDO 206 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #