data_5SC7 # _model_server_result.job_id KQdbVmXLO6keAUbX73zVlQ _model_server_result.datetime_utc '2024-11-14 04:08:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sc7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5SC7 # _exptl.entry_id 5SC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.26 _cell.angle_gamma 90 _cell.entry_id 5SC7 _cell.length_a 31.209 _cell.length_b 82.106 _cell.length_c 32.401 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 32 1_555 A SG CYS 112 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 35 A CYS 57 1_555 A SG CYS 101 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 59 A CYS 81 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5SC7 _atom_sites.fract_transf_matrix[1][1] 0.032042 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.017224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W2M A 1 201 201 W2M LIG . C 3 DMS A 1 202 1 DMS DMS . D 3 DMS A 1 203 2 DMS DMS . E 3 DMS A 1 204 3 DMS DMS . F 3 DMS A 1 205 4 DMS DMS . G 3 DMS A 1 206 5 DMS DMS . H 4 EDO A 1 207 1 EDO EDO . I 4 EDO A 1 208 3 EDO EDO . J 5 SO4 A 1 209 1 SO4 SO4 . K 6 HOH A 1 301 278 HOH HOH . K 6 HOH A 2 302 32 HOH HOH . K 6 HOH A 3 303 289 HOH HOH . K 6 HOH A 4 304 14 HOH HOH . K 6 HOH A 5 305 250 HOH HOH . K 6 HOH A 6 306 216 HOH HOH . K 6 HOH A 7 307 103 HOH HOH . K 6 HOH A 8 308 49 HOH HOH . K 6 HOH A 9 309 71 HOH HOH . K 6 HOH A 10 310 21 HOH HOH . K 6 HOH A 11 311 78 HOH HOH . K 6 HOH A 12 312 163 HOH HOH . K 6 HOH A 13 313 125 HOH HOH . K 6 HOH A 14 314 115 HOH HOH . K 6 HOH A 15 315 63 HOH HOH . K 6 HOH A 16 316 175 HOH HOH . K 6 HOH A 17 317 62 HOH HOH . K 6 HOH A 18 318 215 HOH HOH . K 6 HOH A 19 319 60 HOH HOH . K 6 HOH A 20 320 254 HOH HOH . K 6 HOH A 21 321 180 HOH HOH . K 6 HOH A 22 322 66 HOH HOH . K 6 HOH A 23 323 41 HOH HOH . K 6 HOH A 24 324 110 HOH HOH . K 6 HOH A 25 325 76 HOH HOH . K 6 HOH A 26 326 280 HOH HOH . K 6 HOH A 27 327 210 HOH HOH . K 6 HOH A 28 328 281 HOH HOH . K 6 HOH A 29 329 114 HOH HOH . K 6 HOH A 30 330 137 HOH HOH . K 6 HOH A 31 331 33 HOH HOH . K 6 HOH A 32 332 81 HOH HOH . K 6 HOH A 33 333 50 HOH HOH . K 6 HOH A 34 334 144 HOH HOH . K 6 HOH A 35 335 102 HOH HOH . K 6 HOH A 36 336 2 HOH HOH . K 6 HOH A 37 337 31 HOH HOH . K 6 HOH A 38 338 109 HOH HOH . K 6 HOH A 39 339 275 HOH HOH . K 6 HOH A 40 340 126 HOH HOH . K 6 HOH A 41 341 178 HOH HOH . K 6 HOH A 42 342 27 HOH HOH . K 6 HOH A 43 343 18 HOH HOH . K 6 HOH A 44 344 85 HOH HOH . K 6 HOH A 45 345 120 HOH HOH . K 6 HOH A 46 346 7 HOH HOH . K 6 HOH A 47 347 91 HOH HOH . K 6 HOH A 48 348 218 HOH HOH . K 6 HOH A 49 349 51 HOH HOH . K 6 HOH A 50 350 160 HOH HOH . K 6 HOH A 51 351 3 HOH HOH . K 6 HOH A 52 352 79 HOH HOH . K 6 HOH A 53 353 129 HOH HOH . K 6 HOH A 54 354 139 HOH HOH . K 6 HOH A 55 355 4 HOH HOH . K 6 HOH A 56 356 1 HOH HOH . K 6 HOH A 57 357 205 HOH HOH . K 6 HOH A 58 358 38 HOH HOH . K 6 HOH A 59 359 291 HOH HOH . K 6 HOH A 60 360 259 HOH HOH . K 6 HOH A 61 361 26 HOH HOH . K 6 HOH A 62 362 75 HOH HOH . K 6 HOH A 63 363 112 HOH HOH . K 6 HOH A 64 364 100 HOH HOH . K 6 HOH A 65 365 10 HOH HOH . K 6 HOH A 66 366 39 HOH HOH . K 6 HOH A 67 367 195 HOH HOH . K 6 HOH A 68 368 5 HOH HOH . K 6 HOH A 69 369 13 HOH HOH . K 6 HOH A 70 370 45 HOH HOH . K 6 HOH A 71 371 29 HOH HOH . K 6 HOH A 72 372 154 HOH HOH . K 6 HOH A 73 373 290 HOH HOH . K 6 HOH A 74 374 35 HOH HOH . K 6 HOH A 75 375 28 HOH HOH . K 6 HOH A 76 376 19 HOH HOH . K 6 HOH A 77 377 46 HOH HOH . K 6 HOH A 78 378 101 HOH HOH . K 6 HOH A 79 379 161 HOH HOH . K 6 HOH A 80 380 155 HOH HOH . K 6 HOH A 81 381 54 HOH HOH . K 6 HOH A 82 382 158 HOH HOH . K 6 HOH A 83 383 255 HOH HOH . K 6 HOH A 84 384 128 HOH HOH . K 6 HOH A 85 385 15 HOH HOH . K 6 HOH A 86 386 73 HOH HOH . K 6 HOH A 87 387 82 HOH HOH . K 6 HOH A 88 388 252 HOH HOH . K 6 HOH A 89 389 270 HOH HOH . K 6 HOH A 90 390 117 HOH HOH . K 6 HOH A 91 391 122 HOH HOH . K 6 HOH A 92 392 55 HOH HOH . K 6 HOH A 93 393 11 HOH HOH . K 6 HOH A 94 394 182 HOH HOH . K 6 HOH A 95 395 95 HOH HOH . K 6 HOH A 96 396 57 HOH HOH . K 6 HOH A 97 397 47 HOH HOH . K 6 HOH A 98 398 192 HOH HOH . K 6 HOH A 99 399 48 HOH HOH . K 6 HOH A 100 400 193 HOH HOH . K 6 HOH A 101 401 16 HOH HOH . K 6 HOH A 102 402 116 HOH HOH . K 6 HOH A 103 403 9 HOH HOH . K 6 HOH A 104 404 212 HOH HOH . K 6 HOH A 105 405 44 HOH HOH . K 6 HOH A 106 406 223 HOH HOH . K 6 HOH A 107 407 295 HOH HOH . K 6 HOH A 108 408 43 HOH HOH . K 6 HOH A 109 409 25 HOH HOH . K 6 HOH A 110 410 231 HOH HOH . K 6 HOH A 111 411 36 HOH HOH . K 6 HOH A 112 412 174 HOH HOH . K 6 HOH A 113 413 152 HOH HOH . K 6 HOH A 114 414 124 HOH HOH . K 6 HOH A 115 415 226 HOH HOH . K 6 HOH A 116 416 197 HOH HOH . K 6 HOH A 117 417 272 HOH HOH . K 6 HOH A 118 418 245 HOH HOH . K 6 HOH A 119 419 107 HOH HOH . K 6 HOH A 120 420 151 HOH HOH . K 6 HOH A 121 421 179 HOH HOH . K 6 HOH A 122 422 42 HOH HOH . K 6 HOH A 123 423 40 HOH HOH . K 6 HOH A 124 424 153 HOH HOH . K 6 HOH A 125 425 121 HOH HOH . K 6 HOH A 126 426 200 HOH HOH . K 6 HOH A 127 427 127 HOH HOH . K 6 HOH A 128 428 228 HOH HOH . K 6 HOH A 129 429 227 HOH HOH . K 6 HOH A 130 430 221 HOH HOH . K 6 HOH A 131 431 167 HOH HOH . K 6 HOH A 132 432 239 HOH HOH . K 6 HOH A 133 433 177 HOH HOH . K 6 HOH A 134 434 279 HOH HOH . K 6 HOH A 135 435 264 HOH HOH . K 6 HOH A 136 436 67 HOH HOH . K 6 HOH A 137 437 89 HOH HOH . K 6 HOH A 138 438 106 HOH HOH . K 6 HOH A 139 439 6 HOH HOH . K 6 HOH A 140 440 207 HOH HOH . K 6 HOH A 141 441 86 HOH HOH . K 6 HOH A 142 442 20 HOH HOH . K 6 HOH A 143 443 72 HOH HOH . K 6 HOH A 144 444 201 HOH HOH . K 6 HOH A 145 445 274 HOH HOH . K 6 HOH A 146 446 196 HOH HOH . K 6 HOH A 147 447 298 HOH HOH . K 6 HOH A 148 448 92 HOH HOH . K 6 HOH A 149 449 237 HOH HOH . K 6 HOH A 150 450 123 HOH HOH . K 6 HOH A 151 451 224 HOH HOH . K 6 HOH A 152 452 64 HOH HOH . K 6 HOH A 153 453 189 HOH HOH . K 6 HOH A 154 454 12 HOH HOH . K 6 HOH A 155 455 301 HOH HOH . K 6 HOH A 156 456 87 HOH HOH . K 6 HOH A 157 457 58 HOH HOH . K 6 HOH A 158 458 105 HOH HOH . K 6 HOH A 159 459 24 HOH HOH . K 6 HOH A 160 460 22 HOH HOH . K 6 HOH A 161 461 130 HOH HOH . K 6 HOH A 162 462 77 HOH HOH . K 6 HOH A 163 463 156 HOH HOH . K 6 HOH A 164 464 84 HOH HOH . K 6 HOH A 165 465 146 HOH HOH . K 6 HOH A 166 466 96 HOH HOH . K 6 HOH A 167 467 183 HOH HOH . K 6 HOH A 168 468 108 HOH HOH . K 6 HOH A 169 469 53 HOH HOH . K 6 HOH A 170 470 56 HOH HOH . K 6 HOH A 171 471 119 HOH HOH . K 6 HOH A 172 472 220 HOH HOH . K 6 HOH A 173 473 70 HOH HOH . K 6 HOH A 174 474 94 HOH HOH . K 6 HOH A 175 475 171 HOH HOH . K 6 HOH A 176 476 23 HOH HOH . K 6 HOH A 177 477 80 HOH HOH . K 6 HOH A 178 478 282 HOH HOH . K 6 HOH A 179 479 176 HOH HOH . K 6 HOH A 180 480 131 HOH HOH . K 6 HOH A 181 481 222 HOH HOH . K 6 HOH A 182 482 256 HOH HOH . K 6 HOH A 183 483 299 HOH HOH . K 6 HOH A 184 484 8 HOH HOH . K 6 HOH A 185 485 293 HOH HOH . K 6 HOH A 186 486 165 HOH HOH . K 6 HOH A 187 487 159 HOH HOH . K 6 HOH A 188 488 219 HOH HOH . K 6 HOH A 189 489 98 HOH HOH . K 6 HOH A 190 490 134 HOH HOH . K 6 HOH A 191 491 294 HOH HOH . K 6 HOH A 192 492 214 HOH HOH . K 6 HOH A 193 493 248 HOH HOH . K 6 HOH A 194 494 173 HOH HOH . K 6 HOH A 195 495 191 HOH HOH . K 6 HOH A 196 496 273 HOH HOH . K 6 HOH A 197 497 97 HOH HOH . K 6 HOH A 198 498 284 HOH HOH . K 6 HOH A 199 499 185 HOH HOH . K 6 HOH A 200 500 249 HOH HOH . K 6 HOH A 201 501 243 HOH HOH . K 6 HOH A 202 502 136 HOH HOH . K 6 HOH A 203 503 288 HOH HOH . K 6 HOH A 204 504 258 HOH HOH . K 6 HOH A 205 505 52 HOH HOH . K 6 HOH A 206 506 83 HOH HOH . K 6 HOH A 207 507 267 HOH HOH . K 6 HOH A 208 508 236 HOH HOH . K 6 HOH A 209 509 300 HOH HOH . K 6 HOH A 210 510 61 HOH HOH . K 6 HOH A 211 511 135 HOH HOH . K 6 HOH A 212 512 194 HOH HOH . K 6 HOH A 213 513 240 HOH HOH . K 6 HOH A 214 514 111 HOH HOH . K 6 HOH A 215 515 168 HOH HOH . K 6 HOH A 216 516 241 HOH HOH . K 6 HOH A 217 517 113 HOH HOH . K 6 HOH A 218 518 138 HOH HOH . K 6 HOH A 219 519 37 HOH HOH . K 6 HOH A 220 520 145 HOH HOH . K 6 HOH A 221 521 148 HOH HOH . K 6 HOH A 222 522 187 HOH HOH . K 6 HOH A 223 523 296 HOH HOH . K 6 HOH A 224 524 181 HOH HOH . K 6 HOH A 225 525 133 HOH HOH . K 6 HOH A 226 526 285 HOH HOH . K 6 HOH A 227 527 104 HOH HOH . K 6 HOH A 228 528 292 HOH HOH . K 6 HOH A 229 529 88 HOH HOH . K 6 HOH A 230 530 184 HOH HOH . K 6 HOH A 231 531 59 HOH HOH . K 6 HOH A 232 532 172 HOH HOH . K 6 HOH A 233 533 297 HOH HOH . K 6 HOH A 234 534 247 HOH HOH . K 6 HOH A 235 535 213 HOH HOH . K 6 HOH A 236 536 230 HOH HOH . K 6 HOH A 237 537 265 HOH HOH . K 6 HOH A 238 538 234 HOH HOH . K 6 HOH A 239 539 203 HOH HOH . K 6 HOH A 240 540 251 HOH HOH . K 6 HOH A 241 541 244 HOH HOH . K 6 HOH A 242 542 142 HOH HOH . K 6 HOH A 243 543 186 HOH HOH . K 6 HOH A 244 544 132 HOH HOH . K 6 HOH A 245 545 118 HOH HOH . K 6 HOH A 246 546 30 HOH HOH . K 6 HOH A 247 547 164 HOH HOH . K 6 HOH A 248 548 143 HOH HOH . K 6 HOH A 249 549 242 HOH HOH . K 6 HOH A 250 550 202 HOH HOH . K 6 HOH A 251 551 204 HOH HOH . K 6 HOH A 252 552 65 HOH HOH . K 6 HOH A 253 553 286 HOH HOH . K 6 HOH A 254 554 141 HOH HOH . K 6 HOH A 255 555 211 HOH HOH . K 6 HOH A 256 556 90 HOH HOH . K 6 HOH A 257 557 208 HOH HOH . K 6 HOH A 258 558 99 HOH HOH . K 6 HOH A 259 559 277 HOH HOH . K 6 HOH A 260 560 262 HOH HOH . K 6 HOH A 261 561 190 HOH HOH . K 6 HOH A 262 562 198 HOH HOH . K 6 HOH A 263 563 150 HOH HOH . K 6 HOH A 264 564 261 HOH HOH . K 6 HOH A 265 565 260 HOH HOH . K 6 HOH A 266 566 93 HOH HOH . K 6 HOH A 267 567 162 HOH HOH . K 6 HOH A 268 568 74 HOH HOH . K 6 HOH A 269 569 246 HOH HOH . K 6 HOH A 270 570 170 HOH HOH . K 6 HOH A 271 571 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -5.635 -19.623 9.69 1 23.04 ? S DMS 203 A 1 HETATM 2 O O DMS . . . D 3 -4.248 -20.2 9.492 1 19.91 ? O DMS 203 A 1 HETATM 3 C C1 DMS . . . D 3 -6.462 -20.716 10.799 1 22.73 ? C1 DMS 203 A 1 HETATM 4 C C2 DMS . . . D 3 -6.604 -19.987 8.257 1 20.92 ? C2 DMS 203 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #