data_5SCM # _model_server_result.job_id Hk_BfnvmJvloukONSgDypg _model_server_result.datetime_utc '2025-01-06 03:33:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5scm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 5SCM # _exptl.entry_id 5SCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SCM _cell.length_a 29.92 _cell.length_b 68.55 _cell.length_c 77.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 303 n n PA O2A NAP sing 304 n n PA O5B NAP sing 305 n n PA O3 NAP sing 306 n n O2A HOA2 NAP sing 307 n n O5B C5B NAP sing 308 n n C5B C4B NAP sing 309 n n C5B H51A NAP sing 310 n n C5B H52A NAP sing 311 n n C4B O4B NAP sing 312 n n C4B C3B NAP sing 313 n n C4B H4B NAP sing 314 n n O4B C1B NAP sing 315 n n C3B O3B NAP sing 316 n n C3B C2B NAP sing 317 n n C3B H3B NAP sing 318 n n O3B HO3A NAP sing 319 n n C2B O2B NAP sing 320 n n C2B C1B NAP sing 321 n n C2B H2B NAP sing 322 n n O2B P2B NAP sing 323 n n C1B N9A NAP sing 324 n n C1B H1B NAP sing 325 n n N9A C8A NAP sing 326 n y N9A C4A NAP sing 327 n y C8A N7A NAP doub 328 n y C8A H8A NAP sing 329 n n N7A C5A NAP sing 330 n y C5A C6A NAP sing 331 n y C5A C4A NAP doub 332 n y C6A N6A NAP sing 333 n n C6A N1A NAP doub 334 n y N6A H61A NAP sing 335 n n N6A H62A NAP sing 336 n n N1A C2A NAP sing 337 n y C2A N3A NAP doub 338 n y C2A H2A NAP sing 339 n n N3A C4A NAP sing 340 n y O3 PN NAP sing 341 n n PN O1N NAP doub 342 n n PN O2N NAP sing 343 n n PN O5D NAP sing 344 n n O5D C5D NAP sing 345 n n C5D C4D NAP sing 346 n n C5D H51N NAP sing 347 n n C5D H52N NAP sing 348 n n C4D O4D NAP sing 349 n n C4D C3D NAP sing 350 n n C4D H4D NAP sing 351 n n O4D C1D NAP sing 352 n n C3D O3D NAP sing 353 n n C3D C2D NAP sing 354 n n C3D H3D NAP sing 355 n n O3D HO3N NAP sing 356 n n C2D O2D NAP sing 357 n n C2D C1D NAP sing 358 n n C2D H2D NAP sing 359 n n O2D HO2N NAP sing 360 n n C1D N1N NAP sing 361 n n C1D H1D NAP sing 362 n n N1N C2N NAP sing 363 n y N1N C6N NAP doub 364 n y C2N C3N NAP doub 365 n y C2N H2N NAP sing 366 n n C3N C7N NAP sing 367 n n C3N C4N NAP sing 368 n y C7N O7N NAP doub 369 n n C7N N7N NAP sing 370 n n N7N H71N NAP sing 371 n n N7N H72N NAP sing 372 n n C4N C5N NAP doub 373 n y C4N H4N NAP sing 374 n n C5N C6N NAP sing 375 n y C5N H5N NAP sing 376 n n C6N H6N NAP sing 377 n n P2B O1X NAP doub 378 n n P2B O2X NAP sing 379 n n P2B O3X NAP sing 380 n n O2X HOP2 NAP sing 381 n n O3X HOP3 NAP sing 382 n n # _atom_sites.entry_id 5SCM _atom_sites.fract_transf_matrix[1][1] 0.033422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 201 1 IOD IOD . C 2 IOD A 1 202 2 IOD IOD . D 2 IOD A 1 203 3 IOD IOD . E 2 IOD A 1 204 4 IOD IOD . F 3 EDO A 1 205 1 EDO EDO . G 3 EDO A 1 206 2 EDO EDO . H 4 GHU A 1 207 1 GHU 022 . I 5 NAP A 1 208 1 NAP NAP . J 6 HOH A 1 301 136 HOH HOH . J 6 HOH A 2 302 53 HOH HOH . J 6 HOH A 3 303 71 HOH HOH . J 6 HOH A 4 304 134 HOH HOH . J 6 HOH A 5 305 70 HOH HOH . J 6 HOH A 6 306 69 HOH HOH . J 6 HOH A 7 307 58 HOH HOH . J 6 HOH A 8 308 112 HOH HOH . J 6 HOH A 9 309 127 HOH HOH . J 6 HOH A 10 310 121 HOH HOH . J 6 HOH A 11 311 113 HOH HOH . J 6 HOH A 12 312 24 HOH HOH . J 6 HOH A 13 313 124 HOH HOH . J 6 HOH A 14 314 120 HOH HOH . J 6 HOH A 15 315 93 HOH HOH . J 6 HOH A 16 316 75 HOH HOH . J 6 HOH A 17 317 131 HOH HOH . J 6 HOH A 18 318 128 HOH HOH . J 6 HOH A 19 319 68 HOH HOH . J 6 HOH A 20 320 107 HOH HOH . J 6 HOH A 21 321 28 HOH HOH . J 6 HOH A 22 322 43 HOH HOH . J 6 HOH A 23 323 32 HOH HOH . J 6 HOH A 24 324 55 HOH HOH . J 6 HOH A 25 325 13 HOH HOH . J 6 HOH A 26 326 5 HOH HOH . J 6 HOH A 27 327 36 HOH HOH . J 6 HOH A 28 328 34 HOH HOH . J 6 HOH A 29 329 129 HOH HOH . J 6 HOH A 30 330 92 HOH HOH . J 6 HOH A 31 331 80 HOH HOH . J 6 HOH A 32 332 91 HOH HOH . J 6 HOH A 33 333 94 HOH HOH . J 6 HOH A 34 334 83 HOH HOH . J 6 HOH A 35 335 64 HOH HOH . J 6 HOH A 36 336 89 HOH HOH . J 6 HOH A 37 337 144 HOH HOH . J 6 HOH A 38 338 30 HOH HOH . J 6 HOH A 39 339 20 HOH HOH . J 6 HOH A 40 340 106 HOH HOH . J 6 HOH A 41 341 38 HOH HOH . J 6 HOH A 42 342 103 HOH HOH . J 6 HOH A 43 343 111 HOH HOH . J 6 HOH A 44 344 81 HOH HOH . J 6 HOH A 45 345 101 HOH HOH . J 6 HOH A 46 346 90 HOH HOH . J 6 HOH A 47 347 88 HOH HOH . J 6 HOH A 48 348 82 HOH HOH . J 6 HOH A 49 349 84 HOH HOH . J 6 HOH A 50 350 87 HOH HOH . J 6 HOH A 51 351 62 HOH HOH . J 6 HOH A 52 352 67 HOH HOH . J 6 HOH A 53 353 98 HOH HOH . J 6 HOH A 54 354 31 HOH HOH . J 6 HOH A 55 355 97 HOH HOH . J 6 HOH A 56 356 122 HOH HOH . J 6 HOH A 57 357 142 HOH HOH . J 6 HOH A 58 358 145 HOH HOH . J 6 HOH A 59 359 141 HOH HOH . J 6 HOH A 60 360 133 HOH HOH . J 6 HOH A 61 361 105 HOH HOH . J 6 HOH A 62 362 48 HOH HOH . J 6 HOH A 63 363 16 HOH HOH . J 6 HOH A 64 364 59 HOH HOH . J 6 HOH A 65 365 96 HOH HOH . J 6 HOH A 66 366 115 HOH HOH . J 6 HOH A 67 367 21 HOH HOH . J 6 HOH A 68 368 9 HOH HOH . J 6 HOH A 69 369 6 HOH HOH . J 6 HOH A 70 370 72 HOH HOH . J 6 HOH A 71 371 108 HOH HOH . J 6 HOH A 72 372 126 HOH HOH . J 6 HOH A 73 373 10 HOH HOH . J 6 HOH A 74 374 110 HOH HOH . J 6 HOH A 75 375 44 HOH HOH . J 6 HOH A 76 376 79 HOH HOH . J 6 HOH A 77 377 78 HOH HOH . J 6 HOH A 78 378 63 HOH HOH . J 6 HOH A 79 379 119 HOH HOH . J 6 HOH A 80 380 86 HOH HOH . J 6 HOH A 81 381 25 HOH HOH . J 6 HOH A 82 382 123 HOH HOH . J 6 HOH A 83 383 7 HOH HOH . J 6 HOH A 84 384 3 HOH HOH . J 6 HOH A 85 385 116 HOH HOH . J 6 HOH A 86 386 54 HOH HOH . J 6 HOH A 87 387 104 HOH HOH . J 6 HOH A 88 388 143 HOH HOH . J 6 HOH A 89 389 85 HOH HOH . J 6 HOH A 90 390 130 HOH HOH . J 6 HOH A 91 391 27 HOH HOH . J 6 HOH A 92 392 11 HOH HOH . J 6 HOH A 93 393 149 HOH HOH . J 6 HOH A 94 394 114 HOH HOH . J 6 HOH A 95 395 18 HOH HOH . J 6 HOH A 96 396 2 HOH HOH . J 6 HOH A 97 397 46 HOH HOH . J 6 HOH A 98 398 117 HOH HOH . J 6 HOH A 99 399 150 HOH HOH . J 6 HOH A 100 400 148 HOH HOH . J 6 HOH A 101 401 139 HOH HOH . J 6 HOH A 102 402 73 HOH HOH . J 6 HOH A 103 403 109 HOH HOH . J 6 HOH A 104 404 33 HOH HOH . J 6 HOH A 105 405 40 HOH HOH . J 6 HOH A 106 406 65 HOH HOH . J 6 HOH A 107 407 17 HOH HOH . J 6 HOH A 108 408 4 HOH HOH . J 6 HOH A 109 409 42 HOH HOH . J 6 HOH A 110 410 22 HOH HOH . J 6 HOH A 111 411 137 HOH HOH . J 6 HOH A 112 412 125 HOH HOH . J 6 HOH A 113 413 37 HOH HOH . J 6 HOH A 114 414 35 HOH HOH . J 6 HOH A 115 415 26 HOH HOH . J 6 HOH A 116 416 29 HOH HOH . J 6 HOH A 117 417 118 HOH HOH . J 6 HOH A 118 418 15 HOH HOH . J 6 HOH A 119 419 138 HOH HOH . J 6 HOH A 120 420 50 HOH HOH . J 6 HOH A 121 421 12 HOH HOH . J 6 HOH A 122 422 56 HOH HOH . J 6 HOH A 123 423 60 HOH HOH . J 6 HOH A 124 424 47 HOH HOH . J 6 HOH A 125 425 135 HOH HOH . J 6 HOH A 126 426 51 HOH HOH . J 6 HOH A 127 427 45 HOH HOH . J 6 HOH A 128 428 74 HOH HOH . J 6 HOH A 129 429 8 HOH HOH . J 6 HOH A 130 430 140 HOH HOH . J 6 HOH A 131 431 14 HOH HOH . J 6 HOH A 132 432 19 HOH HOH . J 6 HOH A 133 433 100 HOH HOH . J 6 HOH A 134 434 39 HOH HOH . J 6 HOH A 135 435 99 HOH HOH . J 6 HOH A 136 436 76 HOH HOH . J 6 HOH A 137 437 49 HOH HOH . J 6 HOH A 138 438 132 HOH HOH . J 6 HOH A 139 439 57 HOH HOH . J 6 HOH A 140 440 147 HOH HOH . J 6 HOH A 141 441 102 HOH HOH . J 6 HOH A 142 442 146 HOH HOH . J 6 HOH A 143 443 23 HOH HOH . J 6 HOH A 144 444 95 HOH HOH . J 6 HOH A 145 445 61 HOH HOH . J 6 HOH A 146 446 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . I 5 42.923 -6.073 10.49 1 9.58 ? PA NAP 208 A 1 HETATM 2 O O1A NAP . . . I 5 41.447 -5.757 10.587 1 9.18 ? O1A NAP 208 A 1 HETATM 3 O O2A NAP . . . I 5 43.916 -4.968 10.313 1 10.31 ? O2A NAP 208 A 1 HETATM 4 O O5B NAP . . . I 5 43.004 -7.144 9.3 1 10.69 ? O5B NAP 208 A 1 HETATM 5 C C5B NAP . . . I 5 44.233 -7.791 9.014 1 11.23 ? C5B NAP 208 A 1 HETATM 6 C C4B NAP . . . I 5 44.062 -8.476 7.678 1 11.25 ? C4B NAP 208 A 1 HETATM 7 O O4B NAP . . . I 5 44.182 -7.486 6.66 1 12.46 ? O4B NAP 208 A 1 HETATM 8 C C3B NAP . . . I 5 45.193 -9.447 7.386 1 10.92 ? C3B NAP 208 A 1 HETATM 9 O O3B NAP . . . I 5 44.976 -10.712 8.02 1 11.04 ? O3B NAP 208 A 1 HETATM 10 C C2B NAP . . . I 5 45.151 -9.491 5.871 1 12.31 ? C2B NAP 208 A 1 HETATM 11 O O2B NAP . . . I 5 44.012 -10.211 5.42 1 13.75 ? O2B NAP 208 A 1 HETATM 12 C C1B NAP . . . I 5 44.876 -8.031 5.536 1 12.92 ? C1B NAP 208 A 1 HETATM 13 N N9A NAP . . . I 5 46.159 -7.314 5.374 1 14.99 ? N9A NAP 208 A 1 HETATM 14 C C8A NAP . . . I 5 46.952 -6.815 6.353 1 16.1 ? C8A NAP 208 A 1 HETATM 15 N N7A NAP . . . I 5 48.057 -6.226 5.834 1 16.36 ? N7A NAP 208 A 1 HETATM 16 C C5A NAP . . . I 5 47.977 -6.354 4.496 1 17.11 ? C5A NAP 208 A 1 HETATM 17 C C6A NAP . . . I 5 48.802 -5.951 3.342 1 17.83 ? C6A NAP 208 A 1 HETATM 18 N N6A NAP . . . I 5 49.975 -5.288 3.509 1 19.59 ? N6A NAP 208 A 1 HETATM 19 N N1A NAP . . . I 5 48.344 -6.281 2.118 1 17.31 ? N1A NAP 208 A 1 HETATM 20 C C2A NAP . . . I 5 47.186 -6.942 1.921 1 17.01 ? C2A NAP 208 A 1 HETATM 21 N N3A NAP . . . I 5 46.38 -7.343 2.921 1 16.31 ? N3A NAP 208 A 1 HETATM 22 C C4A NAP . . . I 5 46.727 -7.068 4.201 1 15.52 ? C4A NAP 208 A 1 HETATM 23 O O3 NAP . . . I 5 43.317 -7.075 11.699 1 9.83 ? O3 NAP 208 A 1 HETATM 24 P PN NAP . . . I 5 43.691 -6.782 13.239 1 11.16 ? PN NAP 208 A 1 HETATM 25 O O1N NAP . . . I 5 44.915 -5.898 13.328 1 11.17 ? O1N NAP 208 A 1 HETATM 26 O O2N NAP . . . I 5 43.718 -8.153 13.893 1 10.48 ? O2N NAP 208 A 1 HETATM 27 O O5D NAP . . . I 5 42.436 -5.967 13.809 1 11.22 ? O5D NAP 208 A 1 HETATM 28 C C5D NAP . . . I 5 41.175 -6.593 14.025 1 12.62 ? C5D NAP 208 A 1 HETATM 29 C C4D NAP . . . I 5 40.777 -6.37 15.486 1 11.55 ? C4D NAP 208 A 1 HETATM 30 O O4D NAP . . . I 5 40.606 -4.97 15.75 1 11.13 ? O4D NAP 208 A 1 HETATM 31 C C3D NAP . . . I 5 39.458 -7.03 15.815 1 11 ? C3D NAP 208 A 1 HETATM 32 O O3D NAP . . . I 5 39.56 -7.449 17.186 1 11.74 ? O3D NAP 208 A 1 HETATM 33 C C2D NAP . . . I 5 38.458 -5.893 15.717 1 11.26 ? C2D NAP 208 A 1 HETATM 34 O O2D NAP . . . I 5 37.352 -6.106 16.591 1 12.45 ? O2D NAP 208 A 1 HETATM 35 C C1D NAP . . . I 5 39.272 -4.713 16.201 1 10.21 ? C1D NAP 208 A 1 HETATM 36 N N1N NAP . . . I 5 38.831 -3.395 15.717 1 9.61 ? N1N NAP 208 A 1 HETATM 37 C C2N NAP . . . I 5 38.73 -2.387 16.604 1 8.85 ? C2N NAP 208 A 1 HETATM 38 C C3N NAP . . . I 5 38.356 -1.114 16.206 1 8.85 ? C3N NAP 208 A 1 HETATM 39 C C7N NAP . . . I 5 38.265 -0.018 17.219 1 9.64 ? C7N NAP 208 A 1 HETATM 40 O O7N NAP . . . I 5 38.214 1.145 16.847 1 10.13 ? O7N NAP 208 A 1 HETATM 41 N N7N NAP . . . I 5 38.289 -0.334 18.52 1 7.64 ? N7N NAP 208 A 1 HETATM 42 C C4N NAP . . . I 5 38.092 -0.871 14.852 1 9.27 ? C4N NAP 208 A 1 HETATM 43 C C5N NAP . . . I 5 38.218 -1.924 13.943 1 10.18 ? C5N NAP 208 A 1 HETATM 44 C C6N NAP . . . I 5 38.594 -3.184 14.404 1 10.64 ? C6N NAP 208 A 1 HETATM 45 P P2B NAP . . . I 5 44.06 -11.756 4.935 1 13.98 ? P2B NAP 208 A 1 HETATM 46 O O1X NAP . . . I 5 44.425 -12.516 6.199 1 13.29 ? O1X NAP 208 A 1 HETATM 47 O O2X NAP . . . I 5 42.655 -12.048 4.471 1 13.15 ? O2X NAP 208 A 1 HETATM 48 O O3X NAP . . . I 5 45.14 -11.809 3.889 1 13.98 ? O3X NAP 208 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #