data_5SCT # _model_server_result.job_id -t8GxgloES-OmjvWzKBkSQ _model_server_result.datetime_utc '2024-12-12 07:40:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sct # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SCT # _exptl.entry_id 5SCT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SCT _cell.length_a 29.19 _cell.length_b 67.17 _cell.length_c 72.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SCT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 300 n n PA O2A NAP sing 301 n n PA O5B NAP sing 302 n n PA O3 NAP sing 303 n n O2A HOA2 NAP sing 304 n n O5B C5B NAP sing 305 n n C5B C4B NAP sing 306 n n C5B H51A NAP sing 307 n n C5B H52A NAP sing 308 n n C4B O4B NAP sing 309 n n C4B C3B NAP sing 310 n n C4B H4B NAP sing 311 n n O4B C1B NAP sing 312 n n C3B O3B NAP sing 313 n n C3B C2B NAP sing 314 n n C3B H3B NAP sing 315 n n O3B HO3A NAP sing 316 n n C2B O2B NAP sing 317 n n C2B C1B NAP sing 318 n n C2B H2B NAP sing 319 n n O2B P2B NAP sing 320 n n C1B N9A NAP sing 321 n n C1B H1B NAP sing 322 n n N9A C8A NAP sing 323 n y N9A C4A NAP sing 324 n y C8A N7A NAP doub 325 n y C8A H8A NAP sing 326 n n N7A C5A NAP sing 327 n y C5A C6A NAP sing 328 n y C5A C4A NAP doub 329 n y C6A N6A NAP sing 330 n n C6A N1A NAP doub 331 n y N6A H61A NAP sing 332 n n N6A H62A NAP sing 333 n n N1A C2A NAP sing 334 n y C2A N3A NAP doub 335 n y C2A H2A NAP sing 336 n n N3A C4A NAP sing 337 n y O3 PN NAP sing 338 n n PN O1N NAP doub 339 n n PN O2N NAP sing 340 n n PN O5D NAP sing 341 n n O5D C5D NAP sing 342 n n C5D C4D NAP sing 343 n n C5D H51N NAP sing 344 n n C5D H52N NAP sing 345 n n C4D O4D NAP sing 346 n n C4D C3D NAP sing 347 n n C4D H4D NAP sing 348 n n O4D C1D NAP sing 349 n n C3D O3D NAP sing 350 n n C3D C2D NAP sing 351 n n C3D H3D NAP sing 352 n n O3D HO3N NAP sing 353 n n C2D O2D NAP sing 354 n n C2D C1D NAP sing 355 n n C2D H2D NAP sing 356 n n O2D HO2N NAP sing 357 n n C1D N1N NAP sing 358 n n C1D H1D NAP sing 359 n n N1N C2N NAP sing 360 n y N1N C6N NAP doub 361 n y C2N C3N NAP doub 362 n y C2N H2N NAP sing 363 n n C3N C7N NAP sing 364 n n C3N C4N NAP sing 365 n y C7N O7N NAP doub 366 n n C7N N7N NAP sing 367 n n N7N H71N NAP sing 368 n n N7N H72N NAP sing 369 n n C4N C5N NAP doub 370 n y C4N H4N NAP sing 371 n n C5N C6N NAP sing 372 n y C5N H5N NAP sing 373 n n C6N H6N NAP sing 374 n n P2B O1X NAP doub 375 n n P2B O2X NAP sing 376 n n P2B O3X NAP sing 377 n n O2X HOP2 NAP sing 378 n n O3X HOP3 NAP sing 379 n n # _atom_sites.entry_id 5SCT _atom_sites.fract_transf_matrix[1][1] 0.034258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014888 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 H03 A 1 202 161 H03 601 . D 4 HOH A 1 301 59 HOH HOH . D 4 HOH A 2 302 115 HOH HOH . D 4 HOH A 3 303 124 HOH HOH . D 4 HOH A 4 304 67 HOH HOH . D 4 HOH A 5 305 60 HOH HOH . D 4 HOH A 6 306 145 HOH HOH . D 4 HOH A 7 307 135 HOH HOH . D 4 HOH A 8 308 10 HOH HOH . D 4 HOH A 9 309 93 HOH HOH . D 4 HOH A 10 310 49 HOH HOH . D 4 HOH A 11 311 144 HOH HOH . D 4 HOH A 12 312 142 HOH HOH . D 4 HOH A 13 313 141 HOH HOH . D 4 HOH A 14 314 63 HOH HOH . D 4 HOH A 15 315 114 HOH HOH . D 4 HOH A 16 316 72 HOH HOH . D 4 HOH A 17 317 140 HOH HOH . D 4 HOH A 18 318 46 HOH HOH . D 4 HOH A 19 319 143 HOH HOH . D 4 HOH A 20 320 73 HOH HOH . D 4 HOH A 21 321 108 HOH HOH . D 4 HOH A 22 322 92 HOH HOH . D 4 HOH A 23 323 51 HOH HOH . D 4 HOH A 24 324 22 HOH HOH . D 4 HOH A 25 325 128 HOH HOH . D 4 HOH A 26 326 79 HOH HOH . D 4 HOH A 27 327 83 HOH HOH . D 4 HOH A 28 328 54 HOH HOH . D 4 HOH A 29 329 146 HOH HOH . D 4 HOH A 30 330 26 HOH HOH . D 4 HOH A 31 331 66 HOH HOH . D 4 HOH A 32 332 132 HOH HOH . D 4 HOH A 33 333 32 HOH HOH . D 4 HOH A 34 334 139 HOH HOH . D 4 HOH A 35 335 6 HOH HOH . D 4 HOH A 36 336 131 HOH HOH . D 4 HOH A 37 337 5 HOH HOH . D 4 HOH A 38 338 52 HOH HOH . D 4 HOH A 39 339 33 HOH HOH . D 4 HOH A 40 340 37 HOH HOH . D 4 HOH A 41 341 80 HOH HOH . D 4 HOH A 42 342 56 HOH HOH . D 4 HOH A 43 343 19 HOH HOH . D 4 HOH A 44 344 42 HOH HOH . D 4 HOH A 45 345 138 HOH HOH . D 4 HOH A 46 346 147 HOH HOH . D 4 HOH A 47 347 36 HOH HOH . D 4 HOH A 48 348 41 HOH HOH . D 4 HOH A 49 349 99 HOH HOH . D 4 HOH A 50 350 82 HOH HOH . D 4 HOH A 51 351 86 HOH HOH . D 4 HOH A 52 352 68 HOH HOH . D 4 HOH A 53 353 110 HOH HOH . D 4 HOH A 54 354 61 HOH HOH . D 4 HOH A 55 355 23 HOH HOH . D 4 HOH A 56 356 45 HOH HOH . D 4 HOH A 57 357 69 HOH HOH . D 4 HOH A 58 358 27 HOH HOH . D 4 HOH A 59 359 88 HOH HOH . D 4 HOH A 60 360 25 HOH HOH . D 4 HOH A 61 361 58 HOH HOH . D 4 HOH A 62 362 20 HOH HOH . D 4 HOH A 63 363 161 HOH HOH . D 4 HOH A 64 364 13 HOH HOH . D 4 HOH A 65 365 87 HOH HOH . D 4 HOH A 66 366 157 HOH HOH . D 4 HOH A 67 367 55 HOH HOH . D 4 HOH A 68 368 16 HOH HOH . D 4 HOH A 69 369 29 HOH HOH . D 4 HOH A 70 370 137 HOH HOH . D 4 HOH A 71 371 30 HOH HOH . D 4 HOH A 72 372 89 HOH HOH . D 4 HOH A 73 373 129 HOH HOH . D 4 HOH A 74 374 17 HOH HOH . D 4 HOH A 75 375 71 HOH HOH . D 4 HOH A 76 376 12 HOH HOH . D 4 HOH A 77 377 8 HOH HOH . D 4 HOH A 78 378 96 HOH HOH . D 4 HOH A 79 379 65 HOH HOH . D 4 HOH A 80 380 117 HOH HOH . D 4 HOH A 81 381 11 HOH HOH . D 4 HOH A 82 382 44 HOH HOH . D 4 HOH A 83 383 24 HOH HOH . D 4 HOH A 84 384 98 HOH HOH . D 4 HOH A 85 385 3 HOH HOH . D 4 HOH A 86 386 21 HOH HOH . D 4 HOH A 87 387 4 HOH HOH . D 4 HOH A 88 388 50 HOH HOH . D 4 HOH A 89 389 40 HOH HOH . D 4 HOH A 90 390 74 HOH HOH . D 4 HOH A 91 391 91 HOH HOH . D 4 HOH A 92 392 7 HOH HOH . D 4 HOH A 93 393 95 HOH HOH . D 4 HOH A 94 394 77 HOH HOH . D 4 HOH A 95 395 48 HOH HOH . D 4 HOH A 96 396 14 HOH HOH . D 4 HOH A 97 397 53 HOH HOH . D 4 HOH A 98 398 121 HOH HOH . D 4 HOH A 99 399 1 HOH HOH . D 4 HOH A 100 400 94 HOH HOH . D 4 HOH A 101 401 123 HOH HOH . D 4 HOH A 102 402 119 HOH HOH . D 4 HOH A 103 403 148 HOH HOH . D 4 HOH A 104 404 15 HOH HOH . D 4 HOH A 105 405 34 HOH HOH . D 4 HOH A 106 406 150 HOH HOH . D 4 HOH A 107 407 18 HOH HOH . D 4 HOH A 108 408 38 HOH HOH . D 4 HOH A 109 409 109 HOH HOH . D 4 HOH A 110 410 47 HOH HOH . D 4 HOH A 111 411 57 HOH HOH . D 4 HOH A 112 412 116 HOH HOH . D 4 HOH A 113 413 120 HOH HOH . D 4 HOH A 114 414 28 HOH HOH . D 4 HOH A 115 415 85 HOH HOH . D 4 HOH A 116 416 127 HOH HOH . D 4 HOH A 117 417 35 HOH HOH . D 4 HOH A 118 418 133 HOH HOH . D 4 HOH A 119 419 125 HOH HOH . D 4 HOH A 120 420 75 HOH HOH . D 4 HOH A 121 421 151 HOH HOH . D 4 HOH A 122 422 113 HOH HOH . D 4 HOH A 123 423 9 HOH HOH . D 4 HOH A 124 424 103 HOH HOH . D 4 HOH A 125 425 100 HOH HOH . D 4 HOH A 126 426 31 HOH HOH . D 4 HOH A 127 427 126 HOH HOH . D 4 HOH A 128 428 122 HOH HOH . D 4 HOH A 129 429 78 HOH HOH . D 4 HOH A 130 430 106 HOH HOH . D 4 HOH A 131 431 134 HOH HOH . D 4 HOH A 132 432 136 HOH HOH . D 4 HOH A 133 433 76 HOH HOH . D 4 HOH A 134 434 155 HOH HOH . D 4 HOH A 135 435 62 HOH HOH . D 4 HOH A 136 436 39 HOH HOH . D 4 HOH A 137 437 105 HOH HOH . D 4 HOH A 138 438 64 HOH HOH . D 4 HOH A 139 439 149 HOH HOH . D 4 HOH A 140 440 70 HOH HOH . D 4 HOH A 141 441 43 HOH HOH . D 4 HOH A 142 442 112 HOH HOH . D 4 HOH A 143 443 81 HOH HOH . D 4 HOH A 144 444 130 HOH HOH . D 4 HOH A 145 445 101 HOH HOH . D 4 HOH A 146 446 2 HOH HOH . D 4 HOH A 147 447 118 HOH HOH . D 4 HOH A 148 448 102 HOH HOH . D 4 HOH A 149 449 84 HOH HOH . D 4 HOH A 150 450 104 HOH HOH . D 4 HOH A 151 451 156 HOH HOH . D 4 HOH A 152 452 111 HOH HOH . D 4 HOH A 153 453 163 HOH HOH . D 4 HOH A 154 454 164 HOH HOH . D 4 HOH A 155 455 162 HOH HOH . D 4 HOH A 156 456 159 HOH HOH . D 4 HOH A 157 457 90 HOH HOH . D 4 HOH A 158 458 153 HOH HOH . D 4 HOH A 159 459 152 HOH HOH . D 4 HOH A 160 460 158 HOH HOH . D 4 HOH A 161 461 107 HOH HOH . D 4 HOH A 162 462 154 HOH HOH . D 4 HOH A 163 463 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 18.061 -3.15 12.091 1 9.97 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 16.627 -3.021 12.051 1 9.88 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 18.782 -1.998 12.061 1 10.98 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 18.432 -4.08 10.879 1 10.78 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 19.698 -4.552 10.798 1 13.04 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 19.896 -5.3 9.466 1 13.05 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 19.98 -4.433 8.533 1 13.14 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 21.236 -6.057 9.363 1 11.86 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 21.152 -7.258 9.998 1 13.24 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 21.352 -6.126 7.841 1 13.09 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 20.457 -7.152 7.412 1 11.02 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 20.914 -4.938 7.38 1 11.84 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 21.954 -3.94 7.264 1 16.52 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 22.612 -3.317 8.195 1 20.3 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 23.503 -2.537 7.607 1 22.99 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 23.393 -2.707 6.287 1 19.15 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 24.092 -2.146 5.231 1 23.53 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 25.133 -1.208 5.316 1 21.5 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 23.749 -2.438 4.024 1 20.36 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 22.754 -3.352 3.847 1 17.89 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 22.121 -3.914 4.841 1 14.15 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 22.42 -3.573 6.086 1 15.63 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 18.568 -4.134 13.297 1 9.66 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 18.746 -3.765 14.905 1 10.79 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 19.914 -2.9 15.113 1 12.19 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 18.92 -5.088 15.533 1 13.26 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 17.419 -3.014 15.459 1 10.67 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 16.252 -3.72 15.437 1 11.74 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 15.352 -3.287 16.591 1 12.93 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 15.208 -1.973 16.554 1 12.27 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 13.958 -3.889 16.419 1 15.36 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 13.84 -5.118 16.942 1 15.96 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 13.104 -2.843 17.109 1 13.89 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 12.991 -3.402 18.431 1 22 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 13.8 -1.715 17.205 1 12.09 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 13.182 -0.557 16.564 1 11.07 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 12.81 0.47 17.358 1 9.33 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 12.206 1.572 16.833 1 9.75 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 11.804 2.725 17.713 1 11.44 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 11.583 3.722 17.296 1 10.03 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 11.732 2.485 19.103 1 8.96 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 12.016 1.629 15.491 1 8.81 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 12.388 0.58 14.689 1 7.52 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 12.973 -0.526 15.237 1 10.34 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 20.961 -8.676 7.036 1 11.38 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 22.061 -8.61 6.119 1 12.09 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 19.814 -9.329 6.402 1 11.52 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 21.335 -9.36 8.299 1 13.04 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #