data_5SCW # _model_server_result.job_id aFf8jsAGNDf9ZxMSVypX7g _model_server_result.datetime_utc '2025-03-15 18:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5scw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SCW # _exptl.entry_id 5SCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SCW _cell.length_a 29.98 _cell.length_b 67.47 _cell.length_c 78.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 302 n n PA O2A NAP sing 303 n n PA O5B NAP sing 304 n n PA O3 NAP sing 305 n n O2A HOA2 NAP sing 306 n n O5B C5B NAP sing 307 n n C5B C4B NAP sing 308 n n C5B H51A NAP sing 309 n n C5B H52A NAP sing 310 n n C4B O4B NAP sing 311 n n C4B C3B NAP sing 312 n n C4B H4B NAP sing 313 n n O4B C1B NAP sing 314 n n C3B O3B NAP sing 315 n n C3B C2B NAP sing 316 n n C3B H3B NAP sing 317 n n O3B HO3A NAP sing 318 n n C2B O2B NAP sing 319 n n C2B C1B NAP sing 320 n n C2B H2B NAP sing 321 n n O2B P2B NAP sing 322 n n C1B N9A NAP sing 323 n n C1B H1B NAP sing 324 n n N9A C8A NAP sing 325 n y N9A C4A NAP sing 326 n y C8A N7A NAP doub 327 n y C8A H8A NAP sing 328 n n N7A C5A NAP sing 329 n y C5A C6A NAP sing 330 n y C5A C4A NAP doub 331 n y C6A N6A NAP sing 332 n n C6A N1A NAP doub 333 n y N6A H61A NAP sing 334 n n N6A H62A NAP sing 335 n n N1A C2A NAP sing 336 n y C2A N3A NAP doub 337 n y C2A H2A NAP sing 338 n n N3A C4A NAP sing 339 n y O3 PN NAP sing 340 n n PN O1N NAP doub 341 n n PN O2N NAP sing 342 n n PN O5D NAP sing 343 n n O5D C5D NAP sing 344 n n C5D C4D NAP sing 345 n n C5D H51N NAP sing 346 n n C5D H52N NAP sing 347 n n C4D O4D NAP sing 348 n n C4D C3D NAP sing 349 n n C4D H4D NAP sing 350 n n O4D C1D NAP sing 351 n n C3D O3D NAP sing 352 n n C3D C2D NAP sing 353 n n C3D H3D NAP sing 354 n n O3D HO3N NAP sing 355 n n C2D O2D NAP sing 356 n n C2D C1D NAP sing 357 n n C2D H2D NAP sing 358 n n O2D HO2N NAP sing 359 n n C1D N1N NAP sing 360 n n C1D H1D NAP sing 361 n n N1N C2N NAP sing 362 n y N1N C6N NAP doub 363 n y C2N C3N NAP doub 364 n y C2N H2N NAP sing 365 n n C3N C7N NAP sing 366 n n C3N C4N NAP sing 367 n y C7N O7N NAP doub 368 n n C7N N7N NAP sing 369 n n N7N H71N NAP sing 370 n n N7N H72N NAP sing 371 n n C4N C5N NAP doub 372 n y C4N H4N NAP sing 373 n n C5N C6N NAP sing 374 n y C5N H5N NAP sing 375 n n C6N H6N NAP sing 376 n n P2B O1X NAP doub 377 n n P2B O2X NAP sing 378 n n P2B O3X NAP sing 379 n n O2X HOP2 NAP sing 380 n n O3X HOP3 NAP sing 381 n n # _atom_sites.entry_id 5SCW _atom_sites.fract_transf_matrix[1][1] 0.033356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 H6O A 1 202 161 H6O LIG . D 4 EDO A 1 203 163 EDO EDO . E 4 EDO A 1 204 164 EDO EDO . F 5 CL A 1 205 165 CL CL . G 5 CL A 1 206 166 CL CL . H 5 CL A 1 207 167 CL CL . I 6 HOH A 1 301 64 HOH HOH . I 6 HOH A 2 302 113 HOH HOH . I 6 HOH A 3 303 44 HOH HOH . I 6 HOH A 4 304 33 HOH HOH . I 6 HOH A 5 305 72 HOH HOH . I 6 HOH A 6 306 42 HOH HOH . I 6 HOH A 7 307 59 HOH HOH . I 6 HOH A 8 308 47 HOH HOH . I 6 HOH A 9 309 97 HOH HOH . I 6 HOH A 10 310 105 HOH HOH . I 6 HOH A 11 311 63 HOH HOH . I 6 HOH A 12 312 45 HOH HOH . I 6 HOH A 13 313 29 HOH HOH . I 6 HOH A 14 314 35 HOH HOH . I 6 HOH A 15 315 84 HOH HOH . I 6 HOH A 16 316 83 HOH HOH . I 6 HOH A 17 317 89 HOH HOH . I 6 HOH A 18 318 75 HOH HOH . I 6 HOH A 19 319 22 HOH HOH . I 6 HOH A 20 320 31 HOH HOH . I 6 HOH A 21 321 70 HOH HOH . I 6 HOH A 22 322 30 HOH HOH . I 6 HOH A 23 323 53 HOH HOH . I 6 HOH A 24 324 32 HOH HOH . I 6 HOH A 25 325 76 HOH HOH . I 6 HOH A 26 326 51 HOH HOH . I 6 HOH A 27 327 50 HOH HOH . I 6 HOH A 28 328 65 HOH HOH . I 6 HOH A 29 329 39 HOH HOH . I 6 HOH A 30 330 6 HOH HOH . I 6 HOH A 31 331 56 HOH HOH . I 6 HOH A 32 332 99 HOH HOH . I 6 HOH A 33 333 2 HOH HOH . I 6 HOH A 34 334 17 HOH HOH . I 6 HOH A 35 335 4 HOH HOH . I 6 HOH A 36 336 49 HOH HOH . I 6 HOH A 37 337 34 HOH HOH . I 6 HOH A 38 338 55 HOH HOH . I 6 HOH A 39 339 78 HOH HOH . I 6 HOH A 40 340 69 HOH HOH . I 6 HOH A 41 341 121 HOH HOH . I 6 HOH A 42 342 81 HOH HOH . I 6 HOH A 43 343 21 HOH HOH . I 6 HOH A 44 344 114 HOH HOH . I 6 HOH A 45 345 118 HOH HOH . I 6 HOH A 46 346 8 HOH HOH . I 6 HOH A 47 347 14 HOH HOH . I 6 HOH A 48 348 60 HOH HOH . I 6 HOH A 49 349 38 HOH HOH . I 6 HOH A 50 350 98 HOH HOH . I 6 HOH A 51 351 28 HOH HOH . I 6 HOH A 52 352 3 HOH HOH . I 6 HOH A 53 353 52 HOH HOH . I 6 HOH A 54 354 101 HOH HOH . I 6 HOH A 55 355 92 HOH HOH . I 6 HOH A 56 356 61 HOH HOH . I 6 HOH A 57 357 107 HOH HOH . I 6 HOH A 58 358 74 HOH HOH . I 6 HOH A 59 359 110 HOH HOH . I 6 HOH A 60 360 25 HOH HOH . I 6 HOH A 61 361 5 HOH HOH . I 6 HOH A 62 362 67 HOH HOH . I 6 HOH A 63 363 58 HOH HOH . I 6 HOH A 64 364 12 HOH HOH . I 6 HOH A 65 365 68 HOH HOH . I 6 HOH A 66 366 82 HOH HOH . I 6 HOH A 67 367 24 HOH HOH . I 6 HOH A 68 368 57 HOH HOH . I 6 HOH A 69 369 102 HOH HOH . I 6 HOH A 70 370 7 HOH HOH . I 6 HOH A 71 371 90 HOH HOH . I 6 HOH A 72 372 91 HOH HOH . I 6 HOH A 73 373 116 HOH HOH . I 6 HOH A 74 374 41 HOH HOH . I 6 HOH A 75 375 48 HOH HOH . I 6 HOH A 76 376 26 HOH HOH . I 6 HOH A 77 377 1 HOH HOH . I 6 HOH A 78 378 46 HOH HOH . I 6 HOH A 79 379 54 HOH HOH . I 6 HOH A 80 380 111 HOH HOH . I 6 HOH A 81 381 86 HOH HOH . I 6 HOH A 82 382 20 HOH HOH . I 6 HOH A 83 383 85 HOH HOH . I 6 HOH A 84 384 16 HOH HOH . I 6 HOH A 85 385 62 HOH HOH . I 6 HOH A 86 386 120 HOH HOH . I 6 HOH A 87 387 87 HOH HOH . I 6 HOH A 88 388 123 HOH HOH . I 6 HOH A 89 389 13 HOH HOH . I 6 HOH A 90 390 100 HOH HOH . I 6 HOH A 91 391 108 HOH HOH . I 6 HOH A 92 392 106 HOH HOH . I 6 HOH A 93 393 117 HOH HOH . I 6 HOH A 94 394 66 HOH HOH . I 6 HOH A 95 395 10 HOH HOH . I 6 HOH A 96 396 112 HOH HOH . I 6 HOH A 97 397 115 HOH HOH . I 6 HOH A 98 398 37 HOH HOH . I 6 HOH A 99 399 27 HOH HOH . I 6 HOH A 100 400 11 HOH HOH . I 6 HOH A 101 401 80 HOH HOH . I 6 HOH A 102 402 23 HOH HOH . I 6 HOH A 103 403 88 HOH HOH . I 6 HOH A 104 404 9 HOH HOH . I 6 HOH A 105 405 79 HOH HOH . I 6 HOH A 106 406 73 HOH HOH . I 6 HOH A 107 407 95 HOH HOH . I 6 HOH A 108 408 103 HOH HOH . I 6 HOH A 109 409 125 HOH HOH . I 6 HOH A 110 410 109 HOH HOH . I 6 HOH A 111 411 119 HOH HOH . I 6 HOH A 112 412 43 HOH HOH . I 6 HOH A 113 413 104 HOH HOH . I 6 HOH A 114 414 124 HOH HOH . I 6 HOH A 115 415 19 HOH HOH . I 6 HOH A 116 416 18 HOH HOH . I 6 HOH A 117 417 77 HOH HOH . I 6 HOH A 118 418 122 HOH HOH . I 6 HOH A 119 419 93 HOH HOH . I 6 HOH A 120 420 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -13.069 -5.967 -10.04 1 16.95 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 -11.608 -5.615 -10.181 1 14.82 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 -14.042 -4.845 -10.018 1 17.04 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 -13.194 -6.942 -8.733 1 15.92 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 -14.422 -7.519 -8.441 1 18.45 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 -14.244 -8.156 -7.059 1 16.5 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 -14.297 -7.218 -6.139 1 17.76 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 -15.394 -9.126 -6.754 1 20.38 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 -15.051 -10.369 -7.265 1 22.25 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 -15.336 -9.065 -5.23 1 20.76 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 -14.107 -9.777 -4.843 1 18.21 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 -15.144 -7.786 -4.931 1 20.67 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 -16.396 -7.051 -4.896 1 24.01 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 -17.184 -6.609 -5.88 1 24.6 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 -18.236 -6.018 -5.31 1 25.01 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 -18.102 -6.104 -3.967 1 25.33 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 -18.92 -5.656 -2.926 1 27.86 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 -20.177 -4.954 -3.037 1 27.19 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 -18.555 -5.863 -1.669 1 27.46 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 -17.377 -6.517 -1.383 1 25.58 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 -16.587 -6.957 -2.396 1 26.75 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 -16.965 -6.739 -3.701 1 23.79 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 -13.499 -7.056 -11.201 1 17.77 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 -13.894 -6.715 -12.814 1 18.57 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 -15.176 -5.929 -12.866 1 21.24 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 -14.068 -8.101 -13.411 1 21.12 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 -12.578 -5.929 -13.447 1 20.1 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 -11.444 -6.719 -13.717 1 21.97 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 -11.067 -6.424 -15.169 1 21.17 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 -10.908 -5.115 -15.304 1 20.52 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 -9.718 -7.066 -15.494 1 20.85 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 -9.734 -7.451 -16.804 1 19.62 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 -8.753 -5.88 -15.289 1 19.99 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -7.512 -6.179 -16.047 1 21.76 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 -9.424 -4.878 -15.839 1 19.77 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -9.082 -3.53 -15.429 1 15.47 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -8.969 -2.541 -16.384 1 15.52 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -8.655 -1.223 -16.005 1 14.89 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -8.537 -0.16 -17.055 1 15.73 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -8.454 0.963 -16.728 1 16.71 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -8.564 -0.516 -18.446 1 15.07 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -8.5 -0.922 -14.664 1 15.76 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -8.611 -1.911 -13.717 1 15.82 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 -8.934 -3.223 -14.086 1 16.59 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 -14.187 -11.346 -4.312 1 22.02 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 -15.234 -11.423 -3.248 1 19.04 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 -12.792 -11.717 -3.804 1 21.17 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 -14.579 -12.223 -5.519 1 24.78 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #