data_5SCW # _model_server_result.job_id FSgNuM6Pf2LfhaodBjYQTg _model_server_result.datetime_utc '2024-10-28 02:32:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5scw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5SCW # _exptl.entry_id 5SCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.45 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-4-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)butane-1,2-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SCW _cell.length_a 29.98 _cell.length_b 67.47 _cell.length_c 78.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H28 N4 O4' _chem_comp.formula_weight 376.45 _chem_comp.id H6O _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-4-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)butane-1,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 H6O sing 138 n n C03 C02 H6O sing 139 n n N04 C03 H6O doub 140 n y C05 N04 H6O sing 141 n y N06 C05 H6O sing 142 n n N07 C05 H6O doub 143 n y C08 N07 H6O sing 144 n y N09 C08 H6O sing 145 n n C10 C08 H6O doub 146 n y O11 C10 H6O sing 147 n n C12 O11 H6O sing 148 n n C13 C12 H6O sing 149 n n C14 C13 H6O sing 150 n n O15 C14 H6O sing 151 n n C16 O15 H6O sing 152 n n C17 C16 H6O doub 153 n y C18 C17 H6O sing 154 n y C19 C18 H6O doub 155 n y C20 C19 H6O sing 156 n y C21 C20 H6O doub 157 n y C22 C21 H6O sing 158 n n C23 C22 H6O sing 159 n n C24 C23 H6O sing 160 n n O25 C24 H6O sing 161 n n C26 C24 H6O sing 162 n n O27 C26 H6O sing 163 n n C03 C10 H6O sing 164 n y C16 C21 H6O sing 165 n y C13 H132 H6O sing 166 n n C13 H131 H6O sing 167 n n C17 H171 H6O sing 168 n n C20 H201 H6O sing 169 n n C22 H221 H6O sing 170 n n C22 H222 H6O sing 171 n n C24 H241 H6O sing 172 n n C26 H261 H6O sing 173 n n C26 H262 H6O sing 174 n n C01 H012 H6O sing 175 n n C01 H011 H6O sing 176 n n C01 H013 H6O sing 177 n n C02 H021 H6O sing 178 n n C02 H022 H6O sing 179 n n N06 H062 H6O sing 180 n n N06 H061 H6O sing 181 n n N09 H092 H6O sing 182 n n N09 H091 H6O sing 183 n n C12 H121 H6O sing 184 n n C12 H122 H6O sing 185 n n C14 H142 H6O sing 186 n n C14 H141 H6O sing 187 n n C18 H181 H6O sing 188 n n C19 H191 H6O sing 189 n n C23 H232 H6O sing 190 n n C23 H231 H6O sing 191 n n O25 H251 H6O sing 192 n n O27 H271 H6O sing 193 n n # _atom_sites.entry_id 5SCW _atom_sites.fract_transf_matrix[1][1] 0.033356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 H6O A 1 202 161 H6O LIG . D 4 EDO A 1 203 163 EDO EDO . E 4 EDO A 1 204 164 EDO EDO . F 5 CL A 1 205 165 CL CL . G 5 CL A 1 206 166 CL CL . H 5 CL A 1 207 167 CL CL . I 6 HOH A 1 301 64 HOH HOH . I 6 HOH A 2 302 113 HOH HOH . I 6 HOH A 3 303 44 HOH HOH . I 6 HOH A 4 304 33 HOH HOH . I 6 HOH A 5 305 72 HOH HOH . I 6 HOH A 6 306 42 HOH HOH . I 6 HOH A 7 307 59 HOH HOH . I 6 HOH A 8 308 47 HOH HOH . I 6 HOH A 9 309 97 HOH HOH . I 6 HOH A 10 310 105 HOH HOH . I 6 HOH A 11 311 63 HOH HOH . I 6 HOH A 12 312 45 HOH HOH . I 6 HOH A 13 313 29 HOH HOH . I 6 HOH A 14 314 35 HOH HOH . I 6 HOH A 15 315 84 HOH HOH . I 6 HOH A 16 316 83 HOH HOH . I 6 HOH A 17 317 89 HOH HOH . I 6 HOH A 18 318 75 HOH HOH . I 6 HOH A 19 319 22 HOH HOH . I 6 HOH A 20 320 31 HOH HOH . I 6 HOH A 21 321 70 HOH HOH . I 6 HOH A 22 322 30 HOH HOH . I 6 HOH A 23 323 53 HOH HOH . I 6 HOH A 24 324 32 HOH HOH . I 6 HOH A 25 325 76 HOH HOH . I 6 HOH A 26 326 51 HOH HOH . I 6 HOH A 27 327 50 HOH HOH . I 6 HOH A 28 328 65 HOH HOH . I 6 HOH A 29 329 39 HOH HOH . I 6 HOH A 30 330 6 HOH HOH . I 6 HOH A 31 331 56 HOH HOH . I 6 HOH A 32 332 99 HOH HOH . I 6 HOH A 33 333 2 HOH HOH . I 6 HOH A 34 334 17 HOH HOH . I 6 HOH A 35 335 4 HOH HOH . I 6 HOH A 36 336 49 HOH HOH . I 6 HOH A 37 337 34 HOH HOH . I 6 HOH A 38 338 55 HOH HOH . I 6 HOH A 39 339 78 HOH HOH . I 6 HOH A 40 340 69 HOH HOH . I 6 HOH A 41 341 121 HOH HOH . I 6 HOH A 42 342 81 HOH HOH . I 6 HOH A 43 343 21 HOH HOH . I 6 HOH A 44 344 114 HOH HOH . I 6 HOH A 45 345 118 HOH HOH . I 6 HOH A 46 346 8 HOH HOH . I 6 HOH A 47 347 14 HOH HOH . I 6 HOH A 48 348 60 HOH HOH . I 6 HOH A 49 349 38 HOH HOH . I 6 HOH A 50 350 98 HOH HOH . I 6 HOH A 51 351 28 HOH HOH . I 6 HOH A 52 352 3 HOH HOH . I 6 HOH A 53 353 52 HOH HOH . I 6 HOH A 54 354 101 HOH HOH . I 6 HOH A 55 355 92 HOH HOH . I 6 HOH A 56 356 61 HOH HOH . I 6 HOH A 57 357 107 HOH HOH . I 6 HOH A 58 358 74 HOH HOH . I 6 HOH A 59 359 110 HOH HOH . I 6 HOH A 60 360 25 HOH HOH . I 6 HOH A 61 361 5 HOH HOH . I 6 HOH A 62 362 67 HOH HOH . I 6 HOH A 63 363 58 HOH HOH . I 6 HOH A 64 364 12 HOH HOH . I 6 HOH A 65 365 68 HOH HOH . I 6 HOH A 66 366 82 HOH HOH . I 6 HOH A 67 367 24 HOH HOH . I 6 HOH A 68 368 57 HOH HOH . I 6 HOH A 69 369 102 HOH HOH . I 6 HOH A 70 370 7 HOH HOH . I 6 HOH A 71 371 90 HOH HOH . I 6 HOH A 72 372 91 HOH HOH . I 6 HOH A 73 373 116 HOH HOH . I 6 HOH A 74 374 41 HOH HOH . I 6 HOH A 75 375 48 HOH HOH . I 6 HOH A 76 376 26 HOH HOH . I 6 HOH A 77 377 1 HOH HOH . I 6 HOH A 78 378 46 HOH HOH . I 6 HOH A 79 379 54 HOH HOH . I 6 HOH A 80 380 111 HOH HOH . I 6 HOH A 81 381 86 HOH HOH . I 6 HOH A 82 382 20 HOH HOH . I 6 HOH A 83 383 85 HOH HOH . I 6 HOH A 84 384 16 HOH HOH . I 6 HOH A 85 385 62 HOH HOH . I 6 HOH A 86 386 120 HOH HOH . I 6 HOH A 87 387 87 HOH HOH . I 6 HOH A 88 388 123 HOH HOH . I 6 HOH A 89 389 13 HOH HOH . I 6 HOH A 90 390 100 HOH HOH . I 6 HOH A 91 391 108 HOH HOH . I 6 HOH A 92 392 106 HOH HOH . I 6 HOH A 93 393 117 HOH HOH . I 6 HOH A 94 394 66 HOH HOH . I 6 HOH A 95 395 10 HOH HOH . I 6 HOH A 96 396 112 HOH HOH . I 6 HOH A 97 397 115 HOH HOH . I 6 HOH A 98 398 37 HOH HOH . I 6 HOH A 99 399 27 HOH HOH . I 6 HOH A 100 400 11 HOH HOH . I 6 HOH A 101 401 80 HOH HOH . I 6 HOH A 102 402 23 HOH HOH . I 6 HOH A 103 403 88 HOH HOH . I 6 HOH A 104 404 9 HOH HOH . I 6 HOH A 105 405 79 HOH HOH . I 6 HOH A 106 406 73 HOH HOH . I 6 HOH A 107 407 95 HOH HOH . I 6 HOH A 108 408 103 HOH HOH . I 6 HOH A 109 409 125 HOH HOH . I 6 HOH A 110 410 109 HOH HOH . I 6 HOH A 111 411 119 HOH HOH . I 6 HOH A 112 412 43 HOH HOH . I 6 HOH A 113 413 104 HOH HOH . I 6 HOH A 114 414 124 HOH HOH . I 6 HOH A 115 415 19 HOH HOH . I 6 HOH A 116 416 18 HOH HOH . I 6 HOH A 117 417 77 HOH HOH . I 6 HOH A 118 418 122 HOH HOH . I 6 HOH A 119 419 93 HOH HOH . I 6 HOH A 120 420 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 H6O . . . C 3 -5.422 1.477 -14.963 1 13.5 ? C10 H6O 202 A 1 HETATM 2 C C13 H6O . . . C 3 -4.595 -1.261 -12.654 1 15.14 ? C13 H6O 202 A 1 HETATM 3 C C17 H6O . . . C 3 -2.298 -3.256 -15.868 1 30.72 ? C17 H6O 202 A 1 HETATM 4 C C20 H6O . . . C 3 0.095 -1.976 -16.213 1 34.47 ? C20 H6O 202 A 1 HETATM 5 C C21 H6O . . . C 3 -0.689 -1.651 -15.123 1 33.24 ? C21 H6O 202 A 1 HETATM 6 C C22 H6O . . . C 3 -0.263 -0.602 -14.13 1 39.54 ? C22 H6O 202 A 1 HETATM 7 C C24 H6O . . . C 3 1.646 -0.588 -12.512 1 49.79 ? C24 H6O 202 A 1 HETATM 8 C C26 H6O . . . C 3 2.81 -1.558 -12.589 1 52.78 ? C26 H6O 202 A 1 HETATM 9 C C01 H6O . . . C 3 -2.174 1.484 -16.429 1 17.44 ? C01 H6O 202 A 1 HETATM 10 C C02 H6O . . . C 3 -3.564 0.815 -16.54 1 13.93 ? C02 H6O 202 A 1 HETATM 11 C C03 H6O . . . C 3 -4.618 1.762 -16.032 1 13.27 ? C03 H6O 202 A 1 HETATM 12 N N04 H6O . . . C 3 -4.69 2.93 -16.663 1 11.69 ? N04 H6O 202 A 1 HETATM 13 C C05 H6O . . . C 3 -5.588 3.818 -16.256 1 13.24 ? C05 H6O 202 A 1 HETATM 14 N N06 H6O . . . C 3 -5.678 4.989 -16.907 1 13.6 ? N06 H6O 202 A 1 HETATM 15 N N07 H6O . . . C 3 -6.423 3.616 -15.236 1 11.73 ? N07 H6O 202 A 1 HETATM 16 C C08 H6O . . . C 3 -6.346 2.473 -14.579 1 12.97 ? C08 H6O 202 A 1 HETATM 17 N N09 H6O . . . C 3 -7.194 2.301 -13.55 1 12.14 ? N09 H6O 202 A 1 HETATM 18 O O11 H6O . . . C 3 -5.367 0.271 -14.276 1 13.75 ? O11 H6O 202 A 1 HETATM 19 C C12 H6O . . . C 3 -4.5 0.196 -13.102 1 16.07 ? C12 H6O 202 A 1 HETATM 20 C C14 H6O . . . C 3 -4.061 -2.217 -13.727 1 18.72 ? C14 H6O 202 A 1 HETATM 21 O O15 H6O . . . C 3 -2.658 -1.932 -13.848 1 21.86 ? O15 H6O 202 A 1 HETATM 22 C C16 H6O . . . C 3 -1.901 -2.304 -14.958 1 28.5 ? C16 H6O 202 A 1 HETATM 23 C C18 H6O . . . C 3 -1.501 -3.582 -16.956 1 33.39 ? C18 H6O 202 A 1 HETATM 24 C C19 H6O . . . C 3 -0.299 -2.935 -17.133 1 34.25 ? C19 H6O 202 A 1 HETATM 25 C C23 H6O . . . C 3 0.352 -1.277 -12.897 1 44.85 ? C23 H6O 202 A 1 HETATM 26 O O25 H6O . . . C 3 1.874 0.461 -13.478 1 51.61 ? O25 H6O 202 A 1 HETATM 27 O O27 H6O . . . C 3 3.047 -1.973 -11.231 1 54.71 ? O27 H6O 202 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #