data_5SCX # _model_server_result.job_id TAfwPuQAOvkKD_Ig4f4ULg _model_server_result.datetime_utc '2024-10-10 12:21:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5scx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5SCX # _exptl.entry_id 5SCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SCX _cell.length_a 29.28 _cell.length_b 67.28 _cell.length_c 72.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 131 A GLU 111 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc2 A OG1 THR 133 A THR 113 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? # _chem_comp.formula 'C19 H24 F2 N4 O4' _chem_comp.formula_weight 410.415 _chem_comp.id HJI _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F26 C24 HJI sing 159 n n C13 C12 HJI sing 160 n n C13 C14 HJI sing 161 n n C12 O11 HJI sing 162 n n C24 F25 HJI sing 163 n n C24 C23 HJI sing 164 n n C22 C23 HJI sing 165 n n C22 C21 HJI sing 166 n n N09 C08 HJI sing 167 n n C14 O15 HJI sing 168 n n O15 C16 HJI sing 169 n n C23 C27 HJI sing 170 n n C21 C16 HJI doub 171 n y C21 C20 HJI sing 172 n y C16 C17 HJI sing 173 n y O11 C10 HJI sing 174 n n C08 C10 HJI doub 175 n y C08 N07 HJI sing 176 n y O29 C27 HJI doub 177 n n C20 C19 HJI doub 178 n y C10 C03 HJI sing 179 n y N07 C05 HJI doub 180 n y C17 C18 HJI doub 181 n y C27 O28 HJI sing 182 n n C19 C18 HJI sing 183 n y C03 N04 HJI doub 184 n y C03 C02 HJI sing 185 n n C05 N04 HJI sing 186 n y C05 N06 HJI sing 187 n n C01 C02 HJI sing 188 n n C13 H1 HJI sing 189 n n C13 H2 HJI sing 190 n n C17 H3 HJI sing 191 n n C20 H4 HJI sing 192 n n C22 H5 HJI sing 193 n n C22 H6 HJI sing 194 n n C24 H7 HJI sing 195 n n C01 H8 HJI sing 196 n n C01 H9 HJI sing 197 n n C01 H10 HJI sing 198 n n C02 H11 HJI sing 199 n n C02 H12 HJI sing 200 n n C12 H13 HJI sing 201 n n C12 H14 HJI sing 202 n n C14 H15 HJI sing 203 n n C14 H16 HJI sing 204 n n C18 H17 HJI sing 205 n n C19 H18 HJI sing 206 n n C23 H19 HJI sing 207 n n N06 H20 HJI sing 208 n n N06 H21 HJI sing 209 n n N09 H22 HJI sing 210 n n N09 H23 HJI sing 211 n n O28 H24 HJI sing 212 n n # _atom_sites.entry_id 5SCX _atom_sites.fract_transf_matrix[1][1] 0.034153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 HJI A 1 202 161 HJI LIG . D 4 NA A 1 203 163 NA NA . E 5 EDO A 1 204 164 EDO EDO . F 6 HOH A 1 301 160 HOH HOH . F 6 HOH A 2 302 157 HOH HOH . F 6 HOH A 3 303 132 HOH HOH . F 6 HOH A 4 304 152 HOH HOH . F 6 HOH A 5 305 161 HOH HOH . F 6 HOH A 6 306 183 HOH HOH . F 6 HOH A 7 307 159 HOH HOH . F 6 HOH A 8 308 117 HOH HOH . F 6 HOH A 9 309 156 HOH HOH . F 6 HOH A 10 310 131 HOH HOH . F 6 HOH A 11 311 165 HOH HOH . F 6 HOH A 12 312 136 HOH HOH . F 6 HOH A 13 313 94 HOH HOH . F 6 HOH A 14 314 60 HOH HOH . F 6 HOH A 15 315 58 HOH HOH . F 6 HOH A 16 316 112 HOH HOH . F 6 HOH A 17 317 62 HOH HOH . F 6 HOH A 18 318 122 HOH HOH . F 6 HOH A 19 319 130 HOH HOH . F 6 HOH A 20 320 134 HOH HOH . F 6 HOH A 21 321 71 HOH HOH . F 6 HOH A 22 322 39 HOH HOH . F 6 HOH A 23 323 104 HOH HOH . F 6 HOH A 24 324 121 HOH HOH . F 6 HOH A 25 325 56 HOH HOH . F 6 HOH A 26 326 115 HOH HOH . F 6 HOH A 27 327 140 HOH HOH . F 6 HOH A 28 328 167 HOH HOH . F 6 HOH A 29 329 96 HOH HOH . F 6 HOH A 30 330 37 HOH HOH . F 6 HOH A 31 331 144 HOH HOH . F 6 HOH A 32 332 50 HOH HOH . F 6 HOH A 33 333 33 HOH HOH . F 6 HOH A 34 334 43 HOH HOH . F 6 HOH A 35 335 15 HOH HOH . F 6 HOH A 36 336 53 HOH HOH . F 6 HOH A 37 337 74 HOH HOH . F 6 HOH A 38 338 179 HOH HOH . F 6 HOH A 39 339 113 HOH HOH . F 6 HOH A 40 340 72 HOH HOH . F 6 HOH A 41 341 10 HOH HOH . F 6 HOH A 42 342 8 HOH HOH . F 6 HOH A 43 343 26 HOH HOH . F 6 HOH A 44 344 107 HOH HOH . F 6 HOH A 45 345 63 HOH HOH . F 6 HOH A 46 346 52 HOH HOH . F 6 HOH A 47 347 177 HOH HOH . F 6 HOH A 48 348 146 HOH HOH . F 6 HOH A 49 349 120 HOH HOH . F 6 HOH A 50 350 25 HOH HOH . F 6 HOH A 51 351 20 HOH HOH . F 6 HOH A 52 352 158 HOH HOH . F 6 HOH A 53 353 65 HOH HOH . F 6 HOH A 54 354 93 HOH HOH . F 6 HOH A 55 355 14 HOH HOH . F 6 HOH A 56 356 154 HOH HOH . F 6 HOH A 57 357 12 HOH HOH . F 6 HOH A 58 358 24 HOH HOH . F 6 HOH A 59 359 41 HOH HOH . F 6 HOH A 60 360 73 HOH HOH . F 6 HOH A 61 361 92 HOH HOH . F 6 HOH A 62 362 31 HOH HOH . F 6 HOH A 63 363 51 HOH HOH . F 6 HOH A 64 364 129 HOH HOH . F 6 HOH A 65 365 143 HOH HOH . F 6 HOH A 66 366 23 HOH HOH . F 6 HOH A 67 367 119 HOH HOH . F 6 HOH A 68 368 29 HOH HOH . F 6 HOH A 69 369 16 HOH HOH . F 6 HOH A 70 370 30 HOH HOH . F 6 HOH A 71 371 79 HOH HOH . F 6 HOH A 72 372 13 HOH HOH . F 6 HOH A 73 373 17 HOH HOH . F 6 HOH A 74 374 48 HOH HOH . F 6 HOH A 75 375 172 HOH HOH . F 6 HOH A 76 376 11 HOH HOH . F 6 HOH A 77 377 46 HOH HOH . F 6 HOH A 78 378 55 HOH HOH . F 6 HOH A 79 379 124 HOH HOH . F 6 HOH A 80 380 69 HOH HOH . F 6 HOH A 81 381 34 HOH HOH . F 6 HOH A 82 382 97 HOH HOH . F 6 HOH A 83 383 87 HOH HOH . F 6 HOH A 84 384 6 HOH HOH . F 6 HOH A 85 385 19 HOH HOH . F 6 HOH A 86 386 147 HOH HOH . F 6 HOH A 87 387 3 HOH HOH . F 6 HOH A 88 388 70 HOH HOH . F 6 HOH A 89 389 169 HOH HOH . F 6 HOH A 90 390 64 HOH HOH . F 6 HOH A 91 391 44 HOH HOH . F 6 HOH A 92 392 1 HOH HOH . F 6 HOH A 93 393 99 HOH HOH . F 6 HOH A 94 394 176 HOH HOH . F 6 HOH A 95 395 7 HOH HOH . F 6 HOH A 96 396 40 HOH HOH . F 6 HOH A 97 397 5 HOH HOH . F 6 HOH A 98 398 95 HOH HOH . F 6 HOH A 99 399 100 HOH HOH . F 6 HOH A 100 400 84 HOH HOH . F 6 HOH A 101 401 21 HOH HOH . F 6 HOH A 102 402 27 HOH HOH . F 6 HOH A 103 403 88 HOH HOH . F 6 HOH A 104 404 137 HOH HOH . F 6 HOH A 105 405 102 HOH HOH . F 6 HOH A 106 406 67 HOH HOH . F 6 HOH A 107 407 89 HOH HOH . F 6 HOH A 108 408 141 HOH HOH . F 6 HOH A 109 409 4 HOH HOH . F 6 HOH A 110 410 91 HOH HOH . F 6 HOH A 111 411 85 HOH HOH . F 6 HOH A 112 412 174 HOH HOH . F 6 HOH A 113 413 76 HOH HOH . F 6 HOH A 114 414 9 HOH HOH . F 6 HOH A 115 415 42 HOH HOH . F 6 HOH A 116 416 81 HOH HOH . F 6 HOH A 117 417 45 HOH HOH . F 6 HOH A 118 418 59 HOH HOH . F 6 HOH A 119 419 47 HOH HOH . F 6 HOH A 120 420 153 HOH HOH . F 6 HOH A 121 421 36 HOH HOH . F 6 HOH A 122 422 54 HOH HOH . F 6 HOH A 123 423 2 HOH HOH . F 6 HOH A 124 424 166 HOH HOH . F 6 HOH A 125 425 101 HOH HOH . F 6 HOH A 126 426 80 HOH HOH . F 6 HOH A 127 427 32 HOH HOH . F 6 HOH A 128 428 178 HOH HOH . F 6 HOH A 129 429 186 HOH HOH . F 6 HOH A 130 430 90 HOH HOH . F 6 HOH A 131 431 38 HOH HOH . F 6 HOH A 132 432 57 HOH HOH . F 6 HOH A 133 433 18 HOH HOH . F 6 HOH A 134 434 111 HOH HOH . F 6 HOH A 135 435 135 HOH HOH . F 6 HOH A 136 436 110 HOH HOH . F 6 HOH A 137 437 86 HOH HOH . F 6 HOH A 138 438 164 HOH HOH . F 6 HOH A 139 439 106 HOH HOH . F 6 HOH A 140 440 68 HOH HOH . F 6 HOH A 141 441 66 HOH HOH . F 6 HOH A 142 442 109 HOH HOH . F 6 HOH A 143 443 77 HOH HOH . F 6 HOH A 144 444 61 HOH HOH . F 6 HOH A 145 445 49 HOH HOH . F 6 HOH A 146 446 103 HOH HOH . F 6 HOH A 147 447 188 HOH HOH . F 6 HOH A 148 448 138 HOH HOH . F 6 HOH A 149 449 75 HOH HOH . F 6 HOH A 150 450 187 HOH HOH . F 6 HOH A 151 451 170 HOH HOH . F 6 HOH A 152 452 184 HOH HOH . F 6 HOH A 153 453 35 HOH HOH . F 6 HOH A 154 454 22 HOH HOH . F 6 HOH A 155 455 116 HOH HOH . F 6 HOH A 156 456 133 HOH HOH . F 6 HOH A 157 457 175 HOH HOH . F 6 HOH A 158 458 108 HOH HOH . F 6 HOH A 159 459 128 HOH HOH . F 6 HOH A 160 460 28 HOH HOH . F 6 HOH A 161 461 168 HOH HOH . F 6 HOH A 162 462 142 HOH HOH . F 6 HOH A 163 463 118 HOH HOH . F 6 HOH A 164 464 185 HOH HOH . F 6 HOH A 165 465 163 HOH HOH . F 6 HOH A 166 466 105 HOH HOH . F 6 HOH A 167 467 182 HOH HOH . F 6 HOH A 168 468 82 HOH HOH . F 6 HOH A 169 469 151 HOH HOH . F 6 HOH A 170 470 126 HOH HOH . F 6 HOH A 171 471 125 HOH HOH . F 6 HOH A 172 472 149 HOH HOH . F 6 HOH A 173 473 173 HOH HOH . F 6 HOH A 174 474 148 HOH HOH . F 6 HOH A 175 475 180 HOH HOH . F 6 HOH A 176 476 83 HOH HOH . F 6 HOH A 177 477 127 HOH HOH . F 6 HOH A 178 478 181 HOH HOH . F 6 HOH A 179 479 98 HOH HOH . F 6 HOH A 180 480 78 HOH HOH . F 6 HOH A 181 481 145 HOH HOH . F 6 HOH A 182 482 171 HOH HOH . F 6 HOH A 183 483 123 HOH HOH . F 6 HOH A 184 484 162 HOH HOH . F 6 HOH A 185 485 114 HOH HOH . F 6 HOH A 186 486 155 HOH HOH . F 6 HOH A 187 487 150 HOH HOH . F 6 HOH A 188 488 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 HJI . . . C 3 8.645 3.691 15.055 1 8.84 ? C10 HJI 202 A 1 HETATM 2 C C13 HJI . . . C 3 8.46 0.802 12.798 1 11.98 ? C13 HJI 202 A 1 HETATM 3 C C17 HJI . . . C 3 6.854 -2.317 15.296 1 21.95 ? C17 HJI 202 A 1 HETATM 4 C C20 HJI . . . C 3 4.152 -2.75 14.943 1 21.79 ? C20 HJI 202 A 1 HETATM 5 C C21 HJI . . . C 3 4.758 -1.685 14.288 1 19.95 ? C21 HJI 202 A 1 HETATM 6 C C22 HJI . . . C 3 3.952 -0.756 13.413 1 20.77 ? C22 HJI 202 A 1 HETATM 7 C C24 HJI . . . C 3 3.066 1.572 13.318 1 23.95 ? C24 HJI 202 A 1 HETATM 8 C C01 HJI . . . C 3 5.314 3.36 16.254 1 12.69 ? C01 HJI 202 A 1 HETATM 9 C C02 HJI . . . C 3 6.763 2.917 16.536 1 10.49 ? C02 HJI 202 A 1 HETATM 10 C C03 HJI . . . C 3 7.711 3.964 16.013 1 8.97 ? C03 HJI 202 A 1 HETATM 11 C C05 HJI . . . C 3 8.431 6.16 16.08 1 9.39 ? C05 HJI 202 A 1 HETATM 12 C C08 HJI . . . C 3 9.495 4.745 14.652 1 7.87 ? C08 HJI 202 A 1 HETATM 13 C C12 HJI . . . C 3 8.05 2.187 13.279 1 10.86 ? C12 HJI 202 A 1 HETATM 14 C C14 HJI . . . C 3 8.131 -0.307 13.793 1 13.6 ? C14 HJI 202 A 1 HETATM 15 C C16 HJI . . . C 3 6.12 -1.474 14.482 1 18.62 ? C16 HJI 202 A 1 HETATM 16 C C18 HJI . . . C 3 6.234 -3.383 15.937 1 22.87 ? C18 HJI 202 A 1 HETATM 17 C C19 HJI . . . C 3 4.88 -3.6 15.764 1 23.26 ? C19 HJI 202 A 1 HETATM 18 C C23 HJI . . . C 3 3.545 0.491 14.22 1 21.54 ? C23 HJI 202 A 1 HETATM 19 C C27 HJI . . . C 3 2.467 0.12 15.323 1 21.3 ? C27 HJI 202 A 1 HETATM 20 F F25 HJI . . . C 3 2.602 2.634 14.082 1 24.32 ? F25 HJI 202 A 1 HETATM 21 F F26 HJI . . . C 3 4.089 2.038 12.531 1 26.58 ? F26 HJI 202 A 1 HETATM 22 N N04 HJI . . . C 3 7.606 5.211 16.522 1 8.62 ? N04 HJI 202 A 1 HETATM 23 N N06 HJI . . . C 3 8.312 7.406 16.582 1 9.6 ? N06 HJI 202 A 1 HETATM 24 N N07 HJI . . . C 3 9.373 5.972 15.151 1 8.74 ? N07 HJI 202 A 1 HETATM 25 N N09 HJI . . . C 3 10.435 4.534 13.709 1 8.4 ? N09 HJI 202 A 1 HETATM 26 O O11 HJI . . . C 3 8.813 2.43 14.498 1 9.26 ? O11 HJI 202 A 1 HETATM 27 O O15 HJI . . . C 3 6.7 -0.402 13.823 1 16.1 ? O15 HJI 202 A 1 HETATM 28 O O28 HJI . . . C 3 2.844 0.146 16.503 1 20.16 ? O28 HJI 202 A 1 HETATM 29 O O29 HJI . . . C 3 1.348 -0.138 14.83 1 22.49 ? O29 HJI 202 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #