data_5SCZ # _model_server_result.job_id gqDju35_2lhTiQeYFICZ9g _model_server_result.datetime_utc '2024-11-01 01:30:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5scz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5SCZ # _exptl.entry_id 5SCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SCZ _cell.length_a 29.5 _cell.length_b 67.22 _cell.length_c 72.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 131 A GLU 111 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? metalc ? metalc2 A OG1 THR 133 A THR 113 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5SCZ _atom_sites.fract_transf_matrix[1][1] 0.033898 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 HI9 A 1 202 161 HI9 224 . D 4 NA A 1 203 162 NA NA . E 5 CL A 1 204 163 CL CL . F 6 EDO A 1 205 165 EDO EDO . G 6 EDO A 1 206 166 EDO EDO . H 7 FMT A 1 207 167 FMT FMT . I 7 FMT A 1 208 168 FMT FMT . J 8 HOH A 1 301 294 HOH HOH . J 8 HOH A 2 302 375 HOH HOH . J 8 HOH A 3 303 284 HOH HOH . J 8 HOH A 4 304 263 HOH HOH . J 8 HOH A 5 305 361 HOH HOH . J 8 HOH A 6 306 392 HOH HOH . J 8 HOH A 7 307 292 HOH HOH . J 8 HOH A 8 308 337 HOH HOH . J 8 HOH A 9 309 271 HOH HOH . J 8 HOH A 10 310 341 HOH HOH . J 8 HOH A 11 311 201 HOH HOH . J 8 HOH A 12 312 276 HOH HOH . J 8 HOH A 13 313 307 HOH HOH . J 8 HOH A 14 314 299 HOH HOH . J 8 HOH A 15 315 265 HOH HOH . J 8 HOH A 16 316 198 HOH HOH . J 8 HOH A 17 317 390 HOH HOH . J 8 HOH A 18 318 194 HOH HOH . J 8 HOH A 19 319 405 HOH HOH . J 8 HOH A 20 320 351 HOH HOH . J 8 HOH A 21 321 245 HOH HOH . J 8 HOH A 22 322 178 HOH HOH . J 8 HOH A 23 323 256 HOH HOH . J 8 HOH A 24 324 215 HOH HOH . J 8 HOH A 25 325 397 HOH HOH . J 8 HOH A 26 326 181 HOH HOH . J 8 HOH A 27 327 420 HOH HOH . J 8 HOH A 28 328 416 HOH HOH . J 8 HOH A 29 329 239 HOH HOH . J 8 HOH A 30 330 234 HOH HOH . J 8 HOH A 31 331 176 HOH HOH . J 8 HOH A 32 332 407 HOH HOH . J 8 HOH A 33 333 222 HOH HOH . J 8 HOH A 34 334 323 HOH HOH . J 8 HOH A 35 335 246 HOH HOH . J 8 HOH A 36 336 296 HOH HOH . J 8 HOH A 37 337 187 HOH HOH . J 8 HOH A 38 338 321 HOH HOH . J 8 HOH A 39 339 202 HOH HOH . J 8 HOH A 40 340 336 HOH HOH . J 8 HOH A 41 341 186 HOH HOH . J 8 HOH A 42 342 369 HOH HOH . J 8 HOH A 43 343 188 HOH HOH . J 8 HOH A 44 344 286 HOH HOH . J 8 HOH A 45 345 218 HOH HOH . J 8 HOH A 46 346 177 HOH HOH . J 8 HOH A 47 347 184 HOH HOH . J 8 HOH A 48 348 252 HOH HOH . J 8 HOH A 49 349 235 HOH HOH . J 8 HOH A 50 350 277 HOH HOH . J 8 HOH A 51 351 335 HOH HOH . J 8 HOH A 52 352 231 HOH HOH . J 8 HOH A 53 353 208 HOH HOH . J 8 HOH A 54 354 224 HOH HOH . J 8 HOH A 55 355 219 HOH HOH . J 8 HOH A 56 356 200 HOH HOH . J 8 HOH A 57 357 285 HOH HOH . J 8 HOH A 58 358 260 HOH HOH . J 8 HOH A 59 359 185 HOH HOH . J 8 HOH A 60 360 205 HOH HOH . J 8 HOH A 61 361 269 HOH HOH . J 8 HOH A 62 362 199 HOH HOH . J 8 HOH A 63 363 262 HOH HOH . J 8 HOH A 64 364 167 HOH HOH . J 8 HOH A 65 365 396 HOH HOH . J 8 HOH A 66 366 251 HOH HOH . J 8 HOH A 67 367 214 HOH HOH . J 8 HOH A 68 368 163 HOH HOH . J 8 HOH A 69 369 221 HOH HOH . J 8 HOH A 70 370 203 HOH HOH . J 8 HOH A 71 371 230 HOH HOH . J 8 HOH A 72 372 238 HOH HOH . J 8 HOH A 73 373 172 HOH HOH . J 8 HOH A 74 374 386 HOH HOH . J 8 HOH A 75 375 242 HOH HOH . J 8 HOH A 76 376 212 HOH HOH . J 8 HOH A 77 377 362 HOH HOH . J 8 HOH A 78 378 174 HOH HOH . J 8 HOH A 79 379 278 HOH HOH . J 8 HOH A 80 380 281 HOH HOH . J 8 HOH A 81 381 365 HOH HOH . J 8 HOH A 82 382 220 HOH HOH . J 8 HOH A 83 383 173 HOH HOH . J 8 HOH A 84 384 267 HOH HOH . J 8 HOH A 85 385 342 HOH HOH . J 8 HOH A 86 386 168 HOH HOH . J 8 HOH A 87 387 268 HOH HOH . J 8 HOH A 88 388 249 HOH HOH . J 8 HOH A 89 389 372 HOH HOH . J 8 HOH A 90 390 243 HOH HOH . J 8 HOH A 91 391 254 HOH HOH . J 8 HOH A 92 392 261 HOH HOH . J 8 HOH A 93 393 264 HOH HOH . J 8 HOH A 94 394 303 HOH HOH . J 8 HOH A 95 395 182 HOH HOH . J 8 HOH A 96 396 293 HOH HOH . J 8 HOH A 97 397 225 HOH HOH . J 8 HOH A 98 398 258 HOH HOH . J 8 HOH A 99 399 282 HOH HOH . J 8 HOH A 100 400 189 HOH HOH . J 8 HOH A 101 401 280 HOH HOH . J 8 HOH A 102 402 334 HOH HOH . J 8 HOH A 103 403 164 HOH HOH . J 8 HOH A 104 404 326 HOH HOH . J 8 HOH A 105 405 364 HOH HOH . J 8 HOH A 106 406 291 HOH HOH . J 8 HOH A 107 407 171 HOH HOH . J 8 HOH A 108 408 382 HOH HOH . J 8 HOH A 109 409 210 HOH HOH . J 8 HOH A 110 410 166 HOH HOH . J 8 HOH A 111 411 241 HOH HOH . J 8 HOH A 112 412 195 HOH HOH . J 8 HOH A 113 413 312 HOH HOH . J 8 HOH A 114 414 192 HOH HOH . J 8 HOH A 115 415 366 HOH HOH . J 8 HOH A 116 416 229 HOH HOH . J 8 HOH A 117 417 300 HOH HOH . J 8 HOH A 118 418 373 HOH HOH . J 8 HOH A 119 419 424 HOH HOH . J 8 HOH A 120 420 223 HOH HOH . J 8 HOH A 121 421 233 HOH HOH . J 8 HOH A 122 422 183 HOH HOH . J 8 HOH A 123 423 232 HOH HOH . J 8 HOH A 124 424 370 HOH HOH . J 8 HOH A 125 425 350 HOH HOH . J 8 HOH A 126 426 287 HOH HOH . J 8 HOH A 127 427 309 HOH HOH . J 8 HOH A 128 428 393 HOH HOH . J 8 HOH A 129 429 255 HOH HOH . J 8 HOH A 130 430 329 HOH HOH . J 8 HOH A 131 431 213 HOH HOH . J 8 HOH A 132 432 275 HOH HOH . J 8 HOH A 133 433 196 HOH HOH . J 8 HOH A 134 434 228 HOH HOH . J 8 HOH A 135 435 379 HOH HOH . J 8 HOH A 136 436 216 HOH HOH . J 8 HOH A 137 437 348 HOH HOH . J 8 HOH A 138 438 273 HOH HOH . J 8 HOH A 139 439 381 HOH HOH . J 8 HOH A 140 440 388 HOH HOH . J 8 HOH A 141 441 325 HOH HOH . J 8 HOH A 142 442 429 HOH HOH . J 8 HOH A 143 443 240 HOH HOH . J 8 HOH A 144 444 227 HOH HOH . J 8 HOH A 145 445 352 HOH HOH . J 8 HOH A 146 446 395 HOH HOH . J 8 HOH A 147 447 315 HOH HOH . J 8 HOH A 148 448 290 HOH HOH . J 8 HOH A 149 449 314 HOH HOH . J 8 HOH A 150 450 410 HOH HOH . J 8 HOH A 151 451 298 HOH HOH . J 8 HOH A 152 452 338 HOH HOH . J 8 HOH A 153 453 288 HOH HOH . J 8 HOH A 154 454 236 HOH HOH . J 8 HOH A 155 455 327 HOH HOH . J 8 HOH A 156 456 394 HOH HOH . J 8 HOH A 157 457 399 HOH HOH . J 8 HOH A 158 458 244 HOH HOH . J 8 HOH A 159 459 297 HOH HOH . J 8 HOH A 160 460 385 HOH HOH . J 8 HOH A 161 461 400 HOH HOH . J 8 HOH A 162 462 180 HOH HOH . J 8 HOH A 163 463 419 HOH HOH . J 8 HOH A 164 464 423 HOH HOH . J 8 HOH A 165 465 206 HOH HOH . J 8 HOH A 166 466 304 HOH HOH . J 8 HOH A 167 467 408 HOH HOH . J 8 HOH A 168 468 377 HOH HOH . J 8 HOH A 169 469 333 HOH HOH . J 8 HOH A 170 470 305 HOH HOH . J 8 HOH A 171 471 401 HOH HOH . J 8 HOH A 172 472 389 HOH HOH . J 8 HOH A 173 473 247 HOH HOH . J 8 HOH A 174 474 295 HOH HOH . J 8 HOH A 175 475 331 HOH HOH . J 8 HOH A 176 476 428 HOH HOH . J 8 HOH A 177 477 322 HOH HOH . J 8 HOH A 178 478 320 HOH HOH . J 8 HOH A 179 479 270 HOH HOH . J 8 HOH A 180 480 302 HOH HOH . J 8 HOH A 181 481 353 HOH HOH . J 8 HOH A 182 482 380 HOH HOH . J 8 HOH A 183 483 343 HOH HOH . J 8 HOH A 184 484 421 HOH HOH . J 8 HOH A 185 485 319 HOH HOH . J 8 HOH A 186 486 301 HOH HOH . J 8 HOH A 187 487 253 HOH HOH . J 8 HOH A 188 488 248 HOH HOH . J 8 HOH A 189 489 418 HOH HOH . J 8 HOH A 190 490 266 HOH HOH . J 8 HOH A 191 491 289 HOH HOH . J 8 HOH A 192 492 209 HOH HOH . J 8 HOH A 193 493 317 HOH HOH . J 8 HOH A 194 494 257 HOH HOH . J 8 HOH A 195 495 403 HOH HOH . J 8 HOH A 196 496 422 HOH HOH . J 8 HOH A 197 497 425 HOH HOH . J 8 HOH A 198 498 237 HOH HOH . J 8 HOH A 199 499 357 HOH HOH . J 8 HOH A 200 500 387 HOH HOH . J 8 HOH A 201 501 404 HOH HOH . J 8 HOH A 202 502 427 HOH HOH . J 8 HOH A 203 503 368 HOH HOH . J 8 HOH A 204 504 306 HOH HOH . J 8 HOH A 205 505 413 HOH HOH . J 8 HOH A 206 506 417 HOH HOH . J 8 HOH A 207 507 217 HOH HOH . J 8 HOH A 208 508 426 HOH HOH . J 8 HOH A 209 509 371 HOH HOH . J 8 HOH A 210 510 412 HOH HOH . J 8 HOH A 211 511 274 HOH HOH . J 8 HOH A 212 512 414 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 6 17.762 -6.308 18.668 1 32.36 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 6 17.107 -6.472 17.399 1 39.94 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 6 16.759 -5.855 19.725 1 27.7 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 6 15.562 -6.648 19.66 1 27.98 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #