data_5SD1 # _model_server_result.job_id zroAlrjC1wg9rGoy2IZe0A _model_server_result.datetime_utc '2025-02-27 11:57:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5SD1 # _exptl.entry_id 5SD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD1 _cell.length_a 29.45 _cell.length_b 67.32 _cell.length_c 72.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 F2 N4 O4' _chem_comp.formula_weight 410.415 _chem_comp.id I6J _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 I6J sing 165 n n C03 C02 I6J sing 166 n n N04 C03 I6J doub 167 n y C05 N04 I6J sing 168 n y N06 C05 I6J sing 169 n n N07 C05 I6J doub 170 n y C08 N07 I6J sing 171 n y N09 C08 I6J sing 172 n n C10 C08 I6J doub 173 n y O11 C10 I6J sing 174 n n C12 O11 I6J sing 175 n n C13 C12 I6J sing 176 n n C14 C13 I6J sing 177 n n O15 C14 I6J sing 178 n n C16 O15 I6J sing 179 n n C17 C16 I6J doub 180 n y C18 C17 I6J sing 181 n y C19 C18 I6J doub 182 n y C20 C19 I6J sing 183 n y C21 C20 I6J doub 184 n y C22 C21 I6J sing 185 n n C23 C22 I6J sing 186 n n F25 C24 I6J sing 187 n n F26 C24 I6J sing 188 n n C24 C23 I6J sing 189 n n C27 C23 I6J sing 190 n n O28 C27 I6J doub 191 n n O29 C27 I6J sing 192 n n C03 C10 I6J sing 193 n y C16 C21 I6J sing 194 n y C13 H131 I6J sing 195 n n C13 H132 I6J sing 196 n n C17 H171 I6J sing 197 n n C20 H201 I6J sing 198 n n C22 H221 I6J sing 199 n n C22 H222 I6J sing 200 n n C24 H241 I6J sing 201 n n C01 H013 I6J sing 202 n n C01 H011 I6J sing 203 n n C01 H012 I6J sing 204 n n C02 H021 I6J sing 205 n n C02 H022 I6J sing 206 n n C12 H121 I6J sing 207 n n C12 H122 I6J sing 208 n n C14 H142 I6J sing 209 n n C14 H141 I6J sing 210 n n C18 H181 I6J sing 211 n n C19 H191 I6J sing 212 n n C23 H231 I6J sing 213 n n N06 H062 I6J sing 214 n n N06 H061 I6J sing 215 n n N09 H091 I6J sing 216 n n N09 H092 I6J sing 217 n n O29 H1 I6J sing 218 n n # _atom_sites.entry_id 5SD1 _atom_sites.fract_transf_matrix[1][1] 0.033956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 I6J A 1 202 161 I6J LIG . D 4 EDO A 1 203 163 EDO EDO . E 4 EDO A 1 204 164 EDO EDO . F 5 FMT A 1 205 165 FMT FMT . G 6 HOH A 1 301 100 HOH HOH . G 6 HOH A 2 302 99 HOH HOH . G 6 HOH A 3 303 6 HOH HOH . G 6 HOH A 4 304 39 HOH HOH . G 6 HOH A 5 305 75 HOH HOH . G 6 HOH A 6 306 56 HOH HOH . G 6 HOH A 7 307 140 HOH HOH . G 6 HOH A 8 308 151 HOH HOH . G 6 HOH A 9 309 72 HOH HOH . G 6 HOH A 10 310 148 HOH HOH . G 6 HOH A 11 311 93 HOH HOH . G 6 HOH A 12 312 94 HOH HOH . G 6 HOH A 13 313 32 HOH HOH . G 6 HOH A 14 314 109 HOH HOH . G 6 HOH A 15 315 12 HOH HOH . G 6 HOH A 16 316 62 HOH HOH . G 6 HOH A 17 317 139 HOH HOH . G 6 HOH A 18 318 44 HOH HOH . G 6 HOH A 19 319 76 HOH HOH . G 6 HOH A 20 320 29 HOH HOH . G 6 HOH A 21 321 141 HOH HOH . G 6 HOH A 22 322 11 HOH HOH . G 6 HOH A 23 323 59 HOH HOH . G 6 HOH A 24 324 69 HOH HOH . G 6 HOH A 25 325 52 HOH HOH . G 6 HOH A 26 326 96 HOH HOH . G 6 HOH A 27 327 25 HOH HOH . G 6 HOH A 28 328 37 HOH HOH . G 6 HOH A 29 329 101 HOH HOH . G 6 HOH A 30 330 24 HOH HOH . G 6 HOH A 31 331 49 HOH HOH . G 6 HOH A 32 332 36 HOH HOH . G 6 HOH A 33 333 19 HOH HOH . G 6 HOH A 34 334 74 HOH HOH . G 6 HOH A 35 335 28 HOH HOH . G 6 HOH A 36 336 111 HOH HOH . G 6 HOH A 37 337 15 HOH HOH . G 6 HOH A 38 338 18 HOH HOH . G 6 HOH A 39 339 85 HOH HOH . G 6 HOH A 40 340 38 HOH HOH . G 6 HOH A 41 341 137 HOH HOH . G 6 HOH A 42 342 147 HOH HOH . G 6 HOH A 43 343 58 HOH HOH . G 6 HOH A 44 344 60 HOH HOH . G 6 HOH A 45 345 46 HOH HOH . G 6 HOH A 46 346 35 HOH HOH . G 6 HOH A 47 347 112 HOH HOH . G 6 HOH A 48 348 22 HOH HOH . G 6 HOH A 49 349 122 HOH HOH . G 6 HOH A 50 350 68 HOH HOH . G 6 HOH A 51 351 63 HOH HOH . G 6 HOH A 52 352 17 HOH HOH . G 6 HOH A 53 353 108 HOH HOH . G 6 HOH A 54 354 55 HOH HOH . G 6 HOH A 55 355 20 HOH HOH . G 6 HOH A 56 356 54 HOH HOH . G 6 HOH A 57 357 13 HOH HOH . G 6 HOH A 58 358 4 HOH HOH . G 6 HOH A 59 359 64 HOH HOH . G 6 HOH A 60 360 149 HOH HOH . G 6 HOH A 61 361 155 HOH HOH . G 6 HOH A 62 362 98 HOH HOH . G 6 HOH A 63 363 21 HOH HOH . G 6 HOH A 64 364 129 HOH HOH . G 6 HOH A 65 365 138 HOH HOH . G 6 HOH A 66 366 16 HOH HOH . G 6 HOH A 67 367 27 HOH HOH . G 6 HOH A 68 368 102 HOH HOH . G 6 HOH A 69 369 89 HOH HOH . G 6 HOH A 70 370 26 HOH HOH . G 6 HOH A 71 371 71 HOH HOH . G 6 HOH A 72 372 34 HOH HOH . G 6 HOH A 73 373 82 HOH HOH . G 6 HOH A 74 374 110 HOH HOH . G 6 HOH A 75 375 81 HOH HOH . G 6 HOH A 76 376 152 HOH HOH . G 6 HOH A 77 377 135 HOH HOH . G 6 HOH A 78 378 150 HOH HOH . G 6 HOH A 79 379 41 HOH HOH . G 6 HOH A 80 380 161 HOH HOH . G 6 HOH A 81 381 124 HOH HOH . G 6 HOH A 82 382 23 HOH HOH . G 6 HOH A 83 383 120 HOH HOH . G 6 HOH A 84 384 53 HOH HOH . G 6 HOH A 85 385 113 HOH HOH . G 6 HOH A 86 386 78 HOH HOH . G 6 HOH A 87 387 51 HOH HOH . G 6 HOH A 88 388 92 HOH HOH . G 6 HOH A 89 389 10 HOH HOH . G 6 HOH A 90 390 115 HOH HOH . G 6 HOH A 91 391 128 HOH HOH . G 6 HOH A 92 392 79 HOH HOH . G 6 HOH A 93 393 33 HOH HOH . G 6 HOH A 94 394 132 HOH HOH . G 6 HOH A 95 395 40 HOH HOH . G 6 HOH A 96 396 70 HOH HOH . G 6 HOH A 97 397 7 HOH HOH . G 6 HOH A 98 398 123 HOH HOH . G 6 HOH A 99 399 118 HOH HOH . G 6 HOH A 100 400 143 HOH HOH . G 6 HOH A 101 401 119 HOH HOH . G 6 HOH A 102 402 83 HOH HOH . G 6 HOH A 103 403 42 HOH HOH . G 6 HOH A 104 404 106 HOH HOH . G 6 HOH A 105 405 153 HOH HOH . G 6 HOH A 106 406 9 HOH HOH . G 6 HOH A 107 407 50 HOH HOH . G 6 HOH A 108 408 105 HOH HOH . G 6 HOH A 109 409 77 HOH HOH . G 6 HOH A 110 410 30 HOH HOH . G 6 HOH A 111 411 145 HOH HOH . G 6 HOH A 112 412 114 HOH HOH . G 6 HOH A 113 413 95 HOH HOH . G 6 HOH A 114 414 73 HOH HOH . G 6 HOH A 115 415 86 HOH HOH . G 6 HOH A 116 416 157 HOH HOH . G 6 HOH A 117 417 45 HOH HOH . G 6 HOH A 118 418 80 HOH HOH . G 6 HOH A 119 419 144 HOH HOH . G 6 HOH A 120 420 8 HOH HOH . G 6 HOH A 121 421 136 HOH HOH . G 6 HOH A 122 422 146 HOH HOH . G 6 HOH A 123 423 121 HOH HOH . G 6 HOH A 124 424 97 HOH HOH . G 6 HOH A 125 425 125 HOH HOH . G 6 HOH A 126 426 91 HOH HOH . G 6 HOH A 127 427 158 HOH HOH . G 6 HOH A 128 428 134 HOH HOH . G 6 HOH A 129 429 104 HOH HOH . G 6 HOH A 130 430 107 HOH HOH . G 6 HOH A 131 431 88 HOH HOH . G 6 HOH A 132 432 84 HOH HOH . G 6 HOH A 133 433 156 HOH HOH . G 6 HOH A 134 434 159 HOH HOH . G 6 HOH A 135 435 117 HOH HOH . G 6 HOH A 136 436 103 HOH HOH . G 6 HOH A 137 437 160 HOH HOH . G 6 HOH A 138 438 154 HOH HOH . G 6 HOH A 139 439 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 I6J . A . C 3 8.838 3.673 14.908 0.63 12.03 ? C10 I6J 202 A 1 HETATM 2 C C10 I6J . B . C 3 8.816 3.633 14.894 0.37 12.08 ? C10 I6J 202 A 1 HETATM 3 C C13 I6J . A . C 3 8.412 0.694 12.731 0.63 16.33 ? C13 I6J 202 A 1 HETATM 4 C C13 I6J . B . C 3 8.112 0.576 12.915 0.37 16.7 ? C13 I6J 202 A 1 HETATM 5 C C17 I6J . A . C 3 5.735 -0.811 15.691 0.63 22.04 ? C17 I6J 202 A 1 HETATM 6 C C17 I6J . B . C 3 5.925 -2.434 14.566 0.37 23.46 ? C17 I6J 202 A 1 HETATM 7 C C20 I6J . A . C 3 3.063 -0.495 15.183 0.63 30.22 ? C20 I6J 202 A 1 HETATM 8 C C20 I6J . B . C 3 3.24 -1.889 14.5 0.37 26.6 ? C20 I6J 202 A 1 HETATM 9 C C21 I6J . A . C 3 3.955 -0.188 14.156 0.63 25.36 ? C21 I6J 202 A 1 HETATM 10 C C21 I6J . B . C 3 4.131 -0.822 14.455 0.37 27.05 ? C21 I6J 202 A 1 HETATM 11 C C22 I6J . A . C 3 3.385 0.271 12.816 0.63 27.45 ? C22 I6J 202 A 1 HETATM 12 C C22 I6J . B . C 3 3.587 0.593 14.398 0.37 24.91 ? C22 I6J 202 A 1 HETATM 13 C C24 I6J . A . C 3 2.932 2.748 13.393 0.63 29.19 ? C24 I6J 202 A 1 HETATM 14 C C24 I6J . B . C 3 2.26 2.295 13.203 0.37 29.73 ? C24 I6J 202 A 1 HETATM 15 C C01 I6J . A . C 3 5.621 2.983 15.802 0.63 19.04 ? C01 I6J 202 A 1 HETATM 16 C C01 I6J . B . C 3 5.481 3.362 16.088 0.37 18.37 ? C01 I6J 202 A 1 HETATM 17 C C02 I6J . A . C 3 7.026 2.869 16.435 0.63 13.77 ? C02 I6J 202 A 1 HETATM 18 C C02 I6J . B . C 3 6.932 2.918 16.387 0.37 13.91 ? C02 I6J 202 A 1 HETATM 19 C C03 I6J . A . C 3 7.933 3.941 15.896 0.63 13.39 ? C03 I6J 202 A 1 HETATM 20 C C03 I6J . B . C 3 7.894 3.943 15.854 0.37 13.37 ? C03 I6J 202 A 1 HETATM 21 C C05 I6J . A . C 3 8.606 6.136 15.959 0.63 11.94 ? C05 I6J 202 A 1 HETATM 22 C C05 I6J . B . C 3 8.632 6.113 15.901 0.37 11.93 ? C05 I6J 202 A 1 HETATM 23 C C08 I6J . A . C 3 9.646 4.733 14.478 0.63 11.43 ? C08 I6J 202 A 1 HETATM 24 C C08 I6J . B . C 3 9.666 4.665 14.469 0.37 11.31 ? C08 I6J 202 A 1 HETATM 25 C C12 I6J . A . C 3 8.254 2.167 13.095 0.63 14.29 ? C12 I6J 202 A 1 HETATM 26 C C12 I6J . B . C 3 8.176 2.087 13.133 0.37 14.33 ? C12 I6J 202 A 1 HETATM 27 C C14 I6J . A . C 3 7.697 -0.219 13.732 0.63 15.15 ? C14 I6J 202 A 1 HETATM 28 C C14 I6J . B . C 3 7.812 -0.218 14.19 0.37 15.92 ? C14 I6J 202 A 1 HETATM 29 C C16 I6J . A . C 3 5.325 -0.369 14.439 0.63 22.71 ? C16 I6J 202 A 1 HETATM 30 C C16 I6J . B . C 3 5.5 -1.119 14.492 0.37 22.57 ? C16 I6J 202 A 1 HETATM 31 C C18 I6J . A . C 3 4.818 -1.092 16.693 0.63 23.57 ? C18 I6J 202 A 1 HETATM 32 C C18 I6J . B . C 3 5.012 -3.478 14.6 0.37 22.89 ? C18 I6J 202 A 1 HETATM 33 C C19 I6J . A . C 3 3.473 -0.929 16.437 0.63 24.55 ? C19 I6J 202 A 1 HETATM 34 C C19 I6J . B . C 3 3.661 -3.208 14.565 0.37 18.35 ? C19 I6J 202 A 1 HETATM 35 C C23 I6J . A . C 3 3.43 1.762 12.37 0.63 28.16 ? C23 I6J 202 A 1 HETATM 36 C C23 I6J . B . C 3 3.446 1.385 13.075 0.37 27.63 ? C23 I6J 202 A 1 HETATM 37 C C27 I6J . A . C 3 2.631 1.941 10.989 0.63 26.96 ? C27 I6J 202 A 1 HETATM 38 C C27 I6J . B . C 3 3.369 0.528 11.733 0.37 26.32 ? C27 I6J 202 A 1 HETATM 39 F F25 I6J . A . C 3 1.715 3.325 13.028 0.63 32.02 ? F25 I6J 202 A 1 HETATM 40 F F25 I6J . B . C 3 2.614 3.642 13.168 0.37 27.1 ? F25 I6J 202 A 1 HETATM 41 F F26 I6J . A . C 3 2.817 2.3 14.689 0.63 30.59 ? F26 I6J 202 A 1 HETATM 42 F F26 I6J . B . C 3 1.52 2.069 14.343 0.37 31.74 ? F26 I6J 202 A 1 HETATM 43 N N04 I6J . A . C 3 7.816 5.177 16.42 0.63 12.88 ? N04 I6J 202 A 1 HETATM 44 N N04 I6J . B . C 3 7.799 5.189 16.354 0.37 12.86 ? N04 I6J 202 A 1 HETATM 45 N N06 I6J . A . C 3 8.48 7.383 16.499 0.63 11.08 ? N06 I6J 202 A 1 HETATM 46 N N06 I6J . B . C 3 8.532 7.367 16.415 0.37 11.32 ? N06 I6J 202 A 1 HETATM 47 N N07 I6J . A . C 3 9.526 5.951 15 0.63 10.02 ? N07 I6J 202 A 1 HETATM 48 N N07 I6J . B . C 3 9.569 5.892 14.97 0.37 10.22 ? N07 I6J 202 A 1 HETATM 49 N N09 I6J . A . C 3 10.554 4.512 13.505 0.63 9.83 ? N09 I6J 202 A 1 HETATM 50 N N09 I6J . B . C 3 10.597 4.417 13.526 0.37 9.99 ? N09 I6J 202 A 1 HETATM 51 O O11 I6J . A . C 3 9.003 2.418 14.327 0.63 12.34 ? O11 I6J 202 A 1 HETATM 52 O O11 I6J . B . C 3 8.956 2.361 14.34 0.37 12.45 ? O11 I6J 202 A 1 HETATM 53 O O15 I6J . A . C 3 6.277 -0.09 13.458 0.63 22.26 ? O15 I6J 202 A 1 HETATM 54 O O15 I6J . B . C 3 6.395 -0.058 14.45 0.37 23.76 ? O15 I6J 202 A 1 HETATM 55 O O28 I6J . A . C 3 1.895 1.008 10.649 0.63 34.11 ? O28 I6J 202 A 1 HETATM 56 O O28 I6J . B . C 3 3.838 -0.616 11.722 0.37 25.56 ? O28 I6J 202 A 1 HETATM 57 O O29 I6J . A . C 3 2.834 3.03 10.402 0.63 15.87 ? O29 I6J 202 A 1 HETATM 58 O O29 I6J . B . C 3 2.822 1.178 10.813 0.37 28.6 ? O29 I6J 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 58 #