data_5SD1 # _model_server_result.job_id jacSRSEJPMWkPZEssa9llg _model_server_result.datetime_utc '2024-10-10 12:22:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5SD1 # _exptl.entry_id 5SD1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD1 _cell.length_a 29.45 _cell.length_b 67.32 _cell.length_c 72.29 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5SD1 _atom_sites.fract_transf_matrix[1][1] 0.033956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 I6J A 1 202 161 I6J LIG . D 4 EDO A 1 203 163 EDO EDO . E 4 EDO A 1 204 164 EDO EDO . F 5 FMT A 1 205 165 FMT FMT . G 6 HOH A 1 301 100 HOH HOH . G 6 HOH A 2 302 99 HOH HOH . G 6 HOH A 3 303 6 HOH HOH . G 6 HOH A 4 304 39 HOH HOH . G 6 HOH A 5 305 75 HOH HOH . G 6 HOH A 6 306 56 HOH HOH . G 6 HOH A 7 307 140 HOH HOH . G 6 HOH A 8 308 151 HOH HOH . G 6 HOH A 9 309 72 HOH HOH . G 6 HOH A 10 310 148 HOH HOH . G 6 HOH A 11 311 93 HOH HOH . G 6 HOH A 12 312 94 HOH HOH . G 6 HOH A 13 313 32 HOH HOH . G 6 HOH A 14 314 109 HOH HOH . G 6 HOH A 15 315 12 HOH HOH . G 6 HOH A 16 316 62 HOH HOH . G 6 HOH A 17 317 139 HOH HOH . G 6 HOH A 18 318 44 HOH HOH . G 6 HOH A 19 319 76 HOH HOH . G 6 HOH A 20 320 29 HOH HOH . G 6 HOH A 21 321 141 HOH HOH . G 6 HOH A 22 322 11 HOH HOH . G 6 HOH A 23 323 59 HOH HOH . G 6 HOH A 24 324 69 HOH HOH . G 6 HOH A 25 325 52 HOH HOH . G 6 HOH A 26 326 96 HOH HOH . G 6 HOH A 27 327 25 HOH HOH . G 6 HOH A 28 328 37 HOH HOH . G 6 HOH A 29 329 101 HOH HOH . G 6 HOH A 30 330 24 HOH HOH . G 6 HOH A 31 331 49 HOH HOH . G 6 HOH A 32 332 36 HOH HOH . G 6 HOH A 33 333 19 HOH HOH . G 6 HOH A 34 334 74 HOH HOH . G 6 HOH A 35 335 28 HOH HOH . G 6 HOH A 36 336 111 HOH HOH . G 6 HOH A 37 337 15 HOH HOH . G 6 HOH A 38 338 18 HOH HOH . G 6 HOH A 39 339 85 HOH HOH . G 6 HOH A 40 340 38 HOH HOH . G 6 HOH A 41 341 137 HOH HOH . G 6 HOH A 42 342 147 HOH HOH . G 6 HOH A 43 343 58 HOH HOH . G 6 HOH A 44 344 60 HOH HOH . G 6 HOH A 45 345 46 HOH HOH . G 6 HOH A 46 346 35 HOH HOH . G 6 HOH A 47 347 112 HOH HOH . G 6 HOH A 48 348 22 HOH HOH . G 6 HOH A 49 349 122 HOH HOH . G 6 HOH A 50 350 68 HOH HOH . G 6 HOH A 51 351 63 HOH HOH . G 6 HOH A 52 352 17 HOH HOH . G 6 HOH A 53 353 108 HOH HOH . G 6 HOH A 54 354 55 HOH HOH . G 6 HOH A 55 355 20 HOH HOH . G 6 HOH A 56 356 54 HOH HOH . G 6 HOH A 57 357 13 HOH HOH . G 6 HOH A 58 358 4 HOH HOH . G 6 HOH A 59 359 64 HOH HOH . G 6 HOH A 60 360 149 HOH HOH . G 6 HOH A 61 361 155 HOH HOH . G 6 HOH A 62 362 98 HOH HOH . G 6 HOH A 63 363 21 HOH HOH . G 6 HOH A 64 364 129 HOH HOH . G 6 HOH A 65 365 138 HOH HOH . G 6 HOH A 66 366 16 HOH HOH . G 6 HOH A 67 367 27 HOH HOH . G 6 HOH A 68 368 102 HOH HOH . G 6 HOH A 69 369 89 HOH HOH . G 6 HOH A 70 370 26 HOH HOH . G 6 HOH A 71 371 71 HOH HOH . G 6 HOH A 72 372 34 HOH HOH . G 6 HOH A 73 373 82 HOH HOH . G 6 HOH A 74 374 110 HOH HOH . G 6 HOH A 75 375 81 HOH HOH . G 6 HOH A 76 376 152 HOH HOH . G 6 HOH A 77 377 135 HOH HOH . G 6 HOH A 78 378 150 HOH HOH . G 6 HOH A 79 379 41 HOH HOH . G 6 HOH A 80 380 161 HOH HOH . G 6 HOH A 81 381 124 HOH HOH . G 6 HOH A 82 382 23 HOH HOH . G 6 HOH A 83 383 120 HOH HOH . G 6 HOH A 84 384 53 HOH HOH . G 6 HOH A 85 385 113 HOH HOH . G 6 HOH A 86 386 78 HOH HOH . G 6 HOH A 87 387 51 HOH HOH . G 6 HOH A 88 388 92 HOH HOH . G 6 HOH A 89 389 10 HOH HOH . G 6 HOH A 90 390 115 HOH HOH . G 6 HOH A 91 391 128 HOH HOH . G 6 HOH A 92 392 79 HOH HOH . G 6 HOH A 93 393 33 HOH HOH . G 6 HOH A 94 394 132 HOH HOH . G 6 HOH A 95 395 40 HOH HOH . G 6 HOH A 96 396 70 HOH HOH . G 6 HOH A 97 397 7 HOH HOH . G 6 HOH A 98 398 123 HOH HOH . G 6 HOH A 99 399 118 HOH HOH . G 6 HOH A 100 400 143 HOH HOH . G 6 HOH A 101 401 119 HOH HOH . G 6 HOH A 102 402 83 HOH HOH . G 6 HOH A 103 403 42 HOH HOH . G 6 HOH A 104 404 106 HOH HOH . G 6 HOH A 105 405 153 HOH HOH . G 6 HOH A 106 406 9 HOH HOH . G 6 HOH A 107 407 50 HOH HOH . G 6 HOH A 108 408 105 HOH HOH . G 6 HOH A 109 409 77 HOH HOH . G 6 HOH A 110 410 30 HOH HOH . G 6 HOH A 111 411 145 HOH HOH . G 6 HOH A 112 412 114 HOH HOH . G 6 HOH A 113 413 95 HOH HOH . G 6 HOH A 114 414 73 HOH HOH . G 6 HOH A 115 415 86 HOH HOH . G 6 HOH A 116 416 157 HOH HOH . G 6 HOH A 117 417 45 HOH HOH . G 6 HOH A 118 418 80 HOH HOH . G 6 HOH A 119 419 144 HOH HOH . G 6 HOH A 120 420 8 HOH HOH . G 6 HOH A 121 421 136 HOH HOH . G 6 HOH A 122 422 146 HOH HOH . G 6 HOH A 123 423 121 HOH HOH . G 6 HOH A 124 424 97 HOH HOH . G 6 HOH A 125 425 125 HOH HOH . G 6 HOH A 126 426 91 HOH HOH . G 6 HOH A 127 427 158 HOH HOH . G 6 HOH A 128 428 134 HOH HOH . G 6 HOH A 129 429 104 HOH HOH . G 6 HOH A 130 430 107 HOH HOH . G 6 HOH A 131 431 88 HOH HOH . G 6 HOH A 132 432 84 HOH HOH . G 6 HOH A 133 433 156 HOH HOH . G 6 HOH A 134 434 159 HOH HOH . G 6 HOH A 135 435 117 HOH HOH . G 6 HOH A 136 436 103 HOH HOH . G 6 HOH A 137 437 160 HOH HOH . G 6 HOH A 138 438 154 HOH HOH . G 6 HOH A 139 439 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 17.281 12.749 22.539 1 33.44 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 4 17.966 12.963 21.306 1 34.15 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 4 18.335 12.673 23.631 1 25.28 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 4 17.732 12.09 24.787 1 37.78 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #