data_5SD2 # _model_server_result.job_id tS4SriQsYTFmd1-xUjrW3A _model_server_result.datetime_utc '2024-11-25 16:44:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SD2 # _exptl.entry_id 5SD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD2 _cell.length_a 29.35 _cell.length_b 67.34 _cell.length_c 72.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 300 n n PA O2A NAP sing 301 n n PA O5B NAP sing 302 n n PA O3 NAP sing 303 n n O2A HOA2 NAP sing 304 n n O5B C5B NAP sing 305 n n C5B C4B NAP sing 306 n n C5B H51A NAP sing 307 n n C5B H52A NAP sing 308 n n C4B O4B NAP sing 309 n n C4B C3B NAP sing 310 n n C4B H4B NAP sing 311 n n O4B C1B NAP sing 312 n n C3B O3B NAP sing 313 n n C3B C2B NAP sing 314 n n C3B H3B NAP sing 315 n n O3B HO3A NAP sing 316 n n C2B O2B NAP sing 317 n n C2B C1B NAP sing 318 n n C2B H2B NAP sing 319 n n O2B P2B NAP sing 320 n n C1B N9A NAP sing 321 n n C1B H1B NAP sing 322 n n N9A C8A NAP sing 323 n y N9A C4A NAP sing 324 n y C8A N7A NAP doub 325 n y C8A H8A NAP sing 326 n n N7A C5A NAP sing 327 n y C5A C6A NAP sing 328 n y C5A C4A NAP doub 329 n y C6A N6A NAP sing 330 n n C6A N1A NAP doub 331 n y N6A H61A NAP sing 332 n n N6A H62A NAP sing 333 n n N1A C2A NAP sing 334 n y C2A N3A NAP doub 335 n y C2A H2A NAP sing 336 n n N3A C4A NAP sing 337 n y O3 PN NAP sing 338 n n PN O1N NAP doub 339 n n PN O2N NAP sing 340 n n PN O5D NAP sing 341 n n O5D C5D NAP sing 342 n n C5D C4D NAP sing 343 n n C5D H51N NAP sing 344 n n C5D H52N NAP sing 345 n n C4D O4D NAP sing 346 n n C4D C3D NAP sing 347 n n C4D H4D NAP sing 348 n n O4D C1D NAP sing 349 n n C3D O3D NAP sing 350 n n C3D C2D NAP sing 351 n n C3D H3D NAP sing 352 n n O3D HO3N NAP sing 353 n n C2D O2D NAP sing 354 n n C2D C1D NAP sing 355 n n C2D H2D NAP sing 356 n n O2D HO2N NAP sing 357 n n C1D N1N NAP sing 358 n n C1D H1D NAP sing 359 n n N1N C2N NAP sing 360 n y N1N C6N NAP doub 361 n y C2N C3N NAP doub 362 n y C2N H2N NAP sing 363 n n C3N C7N NAP sing 364 n n C3N C4N NAP sing 365 n y C7N O7N NAP doub 366 n n C7N N7N NAP sing 367 n n N7N H71N NAP sing 368 n n N7N H72N NAP sing 369 n n C4N C5N NAP doub 370 n y C4N H4N NAP sing 371 n n C5N C6N NAP sing 372 n y C5N H5N NAP sing 373 n n C6N H6N NAP sing 374 n n P2B O1X NAP doub 375 n n P2B O2X NAP sing 376 n n P2B O3X NAP sing 377 n n O2X HOP2 NAP sing 378 n n O3X HOP3 NAP sing 379 n n # _atom_sites.entry_id 5SD2 _atom_sites.fract_transf_matrix[1][1] 0.034072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 HJI A 1 202 161 HJI LIG . D 4 EDO A 1 203 163 EDO EDO . E 5 HOH A 1 301 302 HOH HOH . E 5 HOH A 2 302 208 HOH HOH . E 5 HOH A 3 303 275 HOH HOH . E 5 HOH A 4 304 280 HOH HOH . E 5 HOH A 5 305 267 HOH HOH . E 5 HOH A 6 306 213 HOH HOH . E 5 HOH A 7 307 278 HOH HOH . E 5 HOH A 8 308 271 HOH HOH . E 5 HOH A 9 309 236 HOH HOH . E 5 HOH A 10 310 200 HOH HOH . E 5 HOH A 11 311 314 HOH HOH . E 5 HOH A 12 312 190 HOH HOH . E 5 HOH A 13 313 270 HOH HOH . E 5 HOH A 14 314 237 HOH HOH . E 5 HOH A 15 315 219 HOH HOH . E 5 HOH A 16 316 321 HOH HOH . E 5 HOH A 17 317 163 HOH HOH . E 5 HOH A 18 318 165 HOH HOH . E 5 HOH A 19 319 228 HOH HOH . E 5 HOH A 20 320 207 HOH HOH . E 5 HOH A 21 321 238 HOH HOH . E 5 HOH A 22 322 215 HOH HOH . E 5 HOH A 23 323 240 HOH HOH . E 5 HOH A 24 324 204 HOH HOH . E 5 HOH A 25 325 221 HOH HOH . E 5 HOH A 26 326 307 HOH HOH . E 5 HOH A 27 327 194 HOH HOH . E 5 HOH A 28 328 295 HOH HOH . E 5 HOH A 29 329 244 HOH HOH . E 5 HOH A 30 330 305 HOH HOH . E 5 HOH A 31 331 248 HOH HOH . E 5 HOH A 32 332 188 HOH HOH . E 5 HOH A 33 333 196 HOH HOH . E 5 HOH A 34 334 193 HOH HOH . E 5 HOH A 35 335 191 HOH HOH . E 5 HOH A 36 336 182 HOH HOH . E 5 HOH A 37 337 209 HOH HOH . E 5 HOH A 38 338 187 HOH HOH . E 5 HOH A 39 339 316 HOH HOH . E 5 HOH A 40 340 239 HOH HOH . E 5 HOH A 41 341 178 HOH HOH . E 5 HOH A 42 342 197 HOH HOH . E 5 HOH A 43 343 313 HOH HOH . E 5 HOH A 44 344 257 HOH HOH . E 5 HOH A 45 345 214 HOH HOH . E 5 HOH A 46 346 173 HOH HOH . E 5 HOH A 47 347 315 HOH HOH . E 5 HOH A 48 348 320 HOH HOH . E 5 HOH A 49 349 167 HOH HOH . E 5 HOH A 50 350 212 HOH HOH . E 5 HOH A 51 351 235 HOH HOH . E 5 HOH A 52 352 171 HOH HOH . E 5 HOH A 53 353 309 HOH HOH . E 5 HOH A 54 354 180 HOH HOH . E 5 HOH A 55 355 199 HOH HOH . E 5 HOH A 56 356 279 HOH HOH . E 5 HOH A 57 357 189 HOH HOH . E 5 HOH A 58 358 184 HOH HOH . E 5 HOH A 59 359 205 HOH HOH . E 5 HOH A 60 360 220 HOH HOH . E 5 HOH A 61 361 229 HOH HOH . E 5 HOH A 62 362 227 HOH HOH . E 5 HOH A 63 363 251 HOH HOH . E 5 HOH A 64 364 168 HOH HOH . E 5 HOH A 65 365 247 HOH HOH . E 5 HOH A 66 366 170 HOH HOH . E 5 HOH A 67 367 242 HOH HOH . E 5 HOH A 68 368 195 HOH HOH . E 5 HOH A 69 369 301 HOH HOH . E 5 HOH A 70 370 260 HOH HOH . E 5 HOH A 71 371 172 HOH HOH . E 5 HOH A 72 372 202 HOH HOH . E 5 HOH A 73 373 269 HOH HOH . E 5 HOH A 74 374 266 HOH HOH . E 5 HOH A 75 375 177 HOH HOH . E 5 HOH A 76 376 222 HOH HOH . E 5 HOH A 77 377 186 HOH HOH . E 5 HOH A 78 378 234 HOH HOH . E 5 HOH A 79 379 206 HOH HOH . E 5 HOH A 80 380 185 HOH HOH . E 5 HOH A 81 381 174 HOH HOH . E 5 HOH A 82 382 319 HOH HOH . E 5 HOH A 83 383 312 HOH HOH . E 5 HOH A 84 384 198 HOH HOH . E 5 HOH A 85 385 169 HOH HOH . E 5 HOH A 86 386 261 HOH HOH . E 5 HOH A 87 387 328 HOH HOH . E 5 HOH A 88 388 201 HOH HOH . E 5 HOH A 89 389 232 HOH HOH . E 5 HOH A 90 390 243 HOH HOH . E 5 HOH A 91 391 294 HOH HOH . E 5 HOH A 92 392 217 HOH HOH . E 5 HOH A 93 393 233 HOH HOH . E 5 HOH A 94 394 310 HOH HOH . E 5 HOH A 95 395 231 HOH HOH . E 5 HOH A 96 396 277 HOH HOH . E 5 HOH A 97 397 308 HOH HOH . E 5 HOH A 98 398 254 HOH HOH . E 5 HOH A 99 399 183 HOH HOH . E 5 HOH A 100 400 297 HOH HOH . E 5 HOH A 101 401 317 HOH HOH . E 5 HOH A 102 402 224 HOH HOH . E 5 HOH A 103 403 326 HOH HOH . E 5 HOH A 104 404 216 HOH HOH . E 5 HOH A 105 405 296 HOH HOH . E 5 HOH A 106 406 298 HOH HOH . E 5 HOH A 107 407 258 HOH HOH . E 5 HOH A 108 408 230 HOH HOH . E 5 HOH A 109 409 265 HOH HOH . E 5 HOH A 110 410 166 HOH HOH . E 5 HOH A 111 411 263 HOH HOH . E 5 HOH A 112 412 250 HOH HOH . E 5 HOH A 113 413 246 HOH HOH . E 5 HOH A 114 414 318 HOH HOH . E 5 HOH A 115 415 304 HOH HOH . E 5 HOH A 116 416 192 HOH HOH . E 5 HOH A 117 417 322 HOH HOH . E 5 HOH A 118 418 226 HOH HOH . E 5 HOH A 119 419 311 HOH HOH . E 5 HOH A 120 420 223 HOH HOH . E 5 HOH A 121 421 255 HOH HOH . E 5 HOH A 122 422 323 HOH HOH . E 5 HOH A 123 423 327 HOH HOH . E 5 HOH A 124 424 325 HOH HOH . E 5 HOH A 125 425 288 HOH HOH . E 5 HOH A 126 426 306 HOH HOH . E 5 HOH A 127 427 324 HOH HOH . E 5 HOH A 128 428 291 HOH HOH . E 5 HOH A 129 429 281 HOH HOH . E 5 HOH A 130 430 256 HOH HOH . E 5 HOH A 131 431 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 17.956 -3.044 12.129 1 15.64 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 18.722 -1.781 12.134 1 11.72 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 16.46 -2.814 12.105 1 11.48 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 18.269 -4.046 10.946 1 14.46 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 19.584 -4.637 10.93 1 16.03 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 19.807 -5.349 9.624 1 12.34 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 19.888 -4.379 8.558 1 14.27 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 21.115 -6.135 9.537 1 15.86 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 21.007 -7.406 10.163 1 15.46 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 21.236 -6.236 8.02 1 15.17 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 20.345 -7.23 7.482 1 14.86 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 20.764 -4.864 7.551 1 14.46 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 21.859 -3.915 7.358 1 18.67 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 22.579 -3.266 8.327 1 22.55 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 23.547 -2.515 7.862 1 22.71 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 23.456 -2.676 6.487 1 21.57 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 24.201 -2.143 5.417 1 27.03 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 25.252 -1.336 5.574 1 30.19 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 23.837 -2.49 4.161 1 22.33 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 22.807 -3.326 3.999 1 19.48 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 22.042 -3.905 4.93 1 14.83 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 22.417 -3.533 6.16 1 18.95 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 18.384 -3.9 13.406 1 14.74 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 18.551 -3.593 14.965 1 16.26 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 19.62 -2.585 15.15 1 17.07 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 18.65 -4.882 15.686 1 18.82 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 17.149 -2.906 15.305 1 12.34 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 15.931 -3.682 15.406 1 15.06 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 15.283 -3.453 16.754 1 14.37 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 14.899 -2.063 16.882 1 14.38 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 14.003 -4.25 17.016 1 19.02 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 13.849 -4.458 18.415 1 19.82 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 12.922 -3.273 16.564 1 15.74 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 11.667 -3.565 17.167 1 18.8 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 13.515 -1.979 17.11 1 17.32 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 12.973 -0.682 16.42 1 14.82 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 12.67 0.345 17.237 1 12.19 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 12.223 1.539 16.708 1 14.53 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 11.837 2.682 17.61 1 14.91 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 11.626 3.795 17.119 1 13.58 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 11.813 2.464 18.925 1 12.51 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 12.084 1.647 15.326 1 13.13 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 12.385 0.566 14.513 1 14.01 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 12.833 -0.601 15.083 1 11.22 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 20.829 -8.709 7.065 1 16.14 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 19.651 -9.384 6.44 1 16.51 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 21.992 -8.525 6.123 1 17.75 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 21.191 -9.336 8.398 1 16.13 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #