data_5SD2 # _model_server_result.job_id oDUo8VKKRf0w5Qf-5znZlA _model_server_result.datetime_utc '2024-11-29 07:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5SD2 # _exptl.entry_id 5SD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD2 _cell.length_a 29.35 _cell.length_b 67.34 _cell.length_c 72.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 F2 N4 O4' _chem_comp.formula_weight 410.415 _chem_comp.id HJI _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F26 C24 HJI sing 159 n n C13 C12 HJI sing 160 n n C13 C14 HJI sing 161 n n C12 O11 HJI sing 162 n n C24 F25 HJI sing 163 n n C24 C23 HJI sing 164 n n C22 C23 HJI sing 165 n n C22 C21 HJI sing 166 n n N09 C08 HJI sing 167 n n C14 O15 HJI sing 168 n n O15 C16 HJI sing 169 n n C23 C27 HJI sing 170 n n C21 C16 HJI doub 171 n y C21 C20 HJI sing 172 n y C16 C17 HJI sing 173 n y O11 C10 HJI sing 174 n n C08 C10 HJI doub 175 n y C08 N07 HJI sing 176 n y O29 C27 HJI doub 177 n n C20 C19 HJI doub 178 n y C10 C03 HJI sing 179 n y N07 C05 HJI doub 180 n y C17 C18 HJI doub 181 n y C27 O28 HJI sing 182 n n C19 C18 HJI sing 183 n y C03 N04 HJI doub 184 n y C03 C02 HJI sing 185 n n C05 N04 HJI sing 186 n y C05 N06 HJI sing 187 n n C01 C02 HJI sing 188 n n C13 H1 HJI sing 189 n n C13 H2 HJI sing 190 n n C17 H3 HJI sing 191 n n C20 H4 HJI sing 192 n n C22 H5 HJI sing 193 n n C22 H6 HJI sing 194 n n C24 H7 HJI sing 195 n n C01 H8 HJI sing 196 n n C01 H9 HJI sing 197 n n C01 H10 HJI sing 198 n n C02 H11 HJI sing 199 n n C02 H12 HJI sing 200 n n C12 H13 HJI sing 201 n n C12 H14 HJI sing 202 n n C14 H15 HJI sing 203 n n C14 H16 HJI sing 204 n n C18 H17 HJI sing 205 n n C19 H18 HJI sing 206 n n C23 H19 HJI sing 207 n n N06 H20 HJI sing 208 n n N06 H21 HJI sing 209 n n N09 H22 HJI sing 210 n n N09 H23 HJI sing 211 n n O28 H24 HJI sing 212 n n # _atom_sites.entry_id 5SD2 _atom_sites.fract_transf_matrix[1][1] 0.034072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013818 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 HJI A 1 202 161 HJI LIG . D 4 EDO A 1 203 163 EDO EDO . E 5 HOH A 1 301 302 HOH HOH . E 5 HOH A 2 302 208 HOH HOH . E 5 HOH A 3 303 275 HOH HOH . E 5 HOH A 4 304 280 HOH HOH . E 5 HOH A 5 305 267 HOH HOH . E 5 HOH A 6 306 213 HOH HOH . E 5 HOH A 7 307 278 HOH HOH . E 5 HOH A 8 308 271 HOH HOH . E 5 HOH A 9 309 236 HOH HOH . E 5 HOH A 10 310 200 HOH HOH . E 5 HOH A 11 311 314 HOH HOH . E 5 HOH A 12 312 190 HOH HOH . E 5 HOH A 13 313 270 HOH HOH . E 5 HOH A 14 314 237 HOH HOH . E 5 HOH A 15 315 219 HOH HOH . E 5 HOH A 16 316 321 HOH HOH . E 5 HOH A 17 317 163 HOH HOH . E 5 HOH A 18 318 165 HOH HOH . E 5 HOH A 19 319 228 HOH HOH . E 5 HOH A 20 320 207 HOH HOH . E 5 HOH A 21 321 238 HOH HOH . E 5 HOH A 22 322 215 HOH HOH . E 5 HOH A 23 323 240 HOH HOH . E 5 HOH A 24 324 204 HOH HOH . E 5 HOH A 25 325 221 HOH HOH . E 5 HOH A 26 326 307 HOH HOH . E 5 HOH A 27 327 194 HOH HOH . E 5 HOH A 28 328 295 HOH HOH . E 5 HOH A 29 329 244 HOH HOH . E 5 HOH A 30 330 305 HOH HOH . E 5 HOH A 31 331 248 HOH HOH . E 5 HOH A 32 332 188 HOH HOH . E 5 HOH A 33 333 196 HOH HOH . E 5 HOH A 34 334 193 HOH HOH . E 5 HOH A 35 335 191 HOH HOH . E 5 HOH A 36 336 182 HOH HOH . E 5 HOH A 37 337 209 HOH HOH . E 5 HOH A 38 338 187 HOH HOH . E 5 HOH A 39 339 316 HOH HOH . E 5 HOH A 40 340 239 HOH HOH . E 5 HOH A 41 341 178 HOH HOH . E 5 HOH A 42 342 197 HOH HOH . E 5 HOH A 43 343 313 HOH HOH . E 5 HOH A 44 344 257 HOH HOH . E 5 HOH A 45 345 214 HOH HOH . E 5 HOH A 46 346 173 HOH HOH . E 5 HOH A 47 347 315 HOH HOH . E 5 HOH A 48 348 320 HOH HOH . E 5 HOH A 49 349 167 HOH HOH . E 5 HOH A 50 350 212 HOH HOH . E 5 HOH A 51 351 235 HOH HOH . E 5 HOH A 52 352 171 HOH HOH . E 5 HOH A 53 353 309 HOH HOH . E 5 HOH A 54 354 180 HOH HOH . E 5 HOH A 55 355 199 HOH HOH . E 5 HOH A 56 356 279 HOH HOH . E 5 HOH A 57 357 189 HOH HOH . E 5 HOH A 58 358 184 HOH HOH . E 5 HOH A 59 359 205 HOH HOH . E 5 HOH A 60 360 220 HOH HOH . E 5 HOH A 61 361 229 HOH HOH . E 5 HOH A 62 362 227 HOH HOH . E 5 HOH A 63 363 251 HOH HOH . E 5 HOH A 64 364 168 HOH HOH . E 5 HOH A 65 365 247 HOH HOH . E 5 HOH A 66 366 170 HOH HOH . E 5 HOH A 67 367 242 HOH HOH . E 5 HOH A 68 368 195 HOH HOH . E 5 HOH A 69 369 301 HOH HOH . E 5 HOH A 70 370 260 HOH HOH . E 5 HOH A 71 371 172 HOH HOH . E 5 HOH A 72 372 202 HOH HOH . E 5 HOH A 73 373 269 HOH HOH . E 5 HOH A 74 374 266 HOH HOH . E 5 HOH A 75 375 177 HOH HOH . E 5 HOH A 76 376 222 HOH HOH . E 5 HOH A 77 377 186 HOH HOH . E 5 HOH A 78 378 234 HOH HOH . E 5 HOH A 79 379 206 HOH HOH . E 5 HOH A 80 380 185 HOH HOH . E 5 HOH A 81 381 174 HOH HOH . E 5 HOH A 82 382 319 HOH HOH . E 5 HOH A 83 383 312 HOH HOH . E 5 HOH A 84 384 198 HOH HOH . E 5 HOH A 85 385 169 HOH HOH . E 5 HOH A 86 386 261 HOH HOH . E 5 HOH A 87 387 328 HOH HOH . E 5 HOH A 88 388 201 HOH HOH . E 5 HOH A 89 389 232 HOH HOH . E 5 HOH A 90 390 243 HOH HOH . E 5 HOH A 91 391 294 HOH HOH . E 5 HOH A 92 392 217 HOH HOH . E 5 HOH A 93 393 233 HOH HOH . E 5 HOH A 94 394 310 HOH HOH . E 5 HOH A 95 395 231 HOH HOH . E 5 HOH A 96 396 277 HOH HOH . E 5 HOH A 97 397 308 HOH HOH . E 5 HOH A 98 398 254 HOH HOH . E 5 HOH A 99 399 183 HOH HOH . E 5 HOH A 100 400 297 HOH HOH . E 5 HOH A 101 401 317 HOH HOH . E 5 HOH A 102 402 224 HOH HOH . E 5 HOH A 103 403 326 HOH HOH . E 5 HOH A 104 404 216 HOH HOH . E 5 HOH A 105 405 296 HOH HOH . E 5 HOH A 106 406 298 HOH HOH . E 5 HOH A 107 407 258 HOH HOH . E 5 HOH A 108 408 230 HOH HOH . E 5 HOH A 109 409 265 HOH HOH . E 5 HOH A 110 410 166 HOH HOH . E 5 HOH A 111 411 263 HOH HOH . E 5 HOH A 112 412 250 HOH HOH . E 5 HOH A 113 413 246 HOH HOH . E 5 HOH A 114 414 318 HOH HOH . E 5 HOH A 115 415 304 HOH HOH . E 5 HOH A 116 416 192 HOH HOH . E 5 HOH A 117 417 322 HOH HOH . E 5 HOH A 118 418 226 HOH HOH . E 5 HOH A 119 419 311 HOH HOH . E 5 HOH A 120 420 223 HOH HOH . E 5 HOH A 121 421 255 HOH HOH . E 5 HOH A 122 422 323 HOH HOH . E 5 HOH A 123 423 327 HOH HOH . E 5 HOH A 124 424 325 HOH HOH . E 5 HOH A 125 425 288 HOH HOH . E 5 HOH A 126 426 306 HOH HOH . E 5 HOH A 127 427 324 HOH HOH . E 5 HOH A 128 428 291 HOH HOH . E 5 HOH A 129 429 281 HOH HOH . E 5 HOH A 130 430 256 HOH HOH . E 5 HOH A 131 431 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 HJI . . . C 3 8.694 3.746 15.114 1 15.64 ? C10 HJI 202 A 1 HETATM 2 C C13 HJI . . . C 3 8.402 0.883 12.769 1 19.73 ? C13 HJI 202 A 1 HETATM 3 C C17 HJI . . . C 3 6.727 -2.294 15.157 1 24.31 ? C17 HJI 202 A 1 HETATM 4 C C20 HJI . . . C 3 4.053 -2.743 14.705 1 25.12 ? C20 HJI 202 A 1 HETATM 5 C C21 HJI . . . C 3 4.668 -1.65 14.1 1 26.72 ? C21 HJI 202 A 1 HETATM 6 C C22 HJI . . . C 3 3.882 -0.697 13.243 1 21.68 ? C22 HJI 202 A 1 HETATM 7 C C24 HJI . . . C 3 3.012 1.649 13.243 1 28.67 ? C24 HJI 202 A 1 HETATM 8 C C01 HJI . . . C 3 5.375 3.275 16.137 1 16.28 ? C01 HJI 202 A 1 HETATM 9 C C02 HJI . . . C 3 6.815 3.001 16.636 1 8.57 ? C02 HJI 202 A 1 HETATM 10 C C03 HJI . . . C 3 7.768 4.039 16.089 1 14.29 ? C03 HJI 202 A 1 HETATM 11 C C05 HJI . . . C 3 8.485 6.227 16.112 1 12.85 ? C05 HJI 202 A 1 HETATM 12 C C08 HJI . . . C 3 9.538 4.796 14.682 1 13.99 ? C08 HJI 202 A 1 HETATM 13 C C12 HJI . . . C 3 8.114 2.292 13.289 1 12.36 ? C12 HJI 202 A 1 HETATM 14 C C14 HJI . . . C 3 8.047 -0.19 13.799 1 16.27 ? C14 HJI 202 A 1 HETATM 15 C C16 HJI . . . C 3 6.015 -1.431 14.345 1 20.9 ? C16 HJI 202 A 1 HETATM 16 C C18 HJI . . . C 3 6.108 -3.391 15.741 1 29.21 ? C18 HJI 202 A 1 HETATM 17 C C19 HJI . . . C 3 4.761 -3.616 15.518 1 25.93 ? C19 HJI 202 A 1 HETATM 18 C C23 HJI . . . C 3 3.495 0.531 14.101 1 23.6 ? C23 HJI 202 A 1 HETATM 19 C C27 HJI . . . C 3 2.458 0.129 15.235 1 26.63 ? C27 HJI 202 A 1 HETATM 20 F F25 HJI . . . C 3 2.518 2.683 14.031 1 25.56 ? F25 HJI 202 A 1 HETATM 21 F F26 HJI . . . C 3 4.032 2.135 12.449 1 31.9 ? F26 HJI 202 A 1 HETATM 22 N N04 HJI . . . C 3 7.667 5.288 16.587 1 12.27 ? N04 HJI 202 A 1 HETATM 23 N N06 HJI . . . C 3 8.361 7.469 16.651 1 13.46 ? N06 HJI 202 A 1 HETATM 24 N N07 HJI . . . C 3 9.434 6.029 15.169 1 10.37 ? N07 HJI 202 A 1 HETATM 25 N N09 HJI . . . C 3 10.449 4.537 13.74 1 10.21 ? N09 HJI 202 A 1 HETATM 26 O O11 HJI . . . C 3 8.854 2.479 14.536 1 11.62 ? O11 HJI 202 A 1 HETATM 27 O O15 HJI . . . C 3 6.613 -0.333 13.735 1 16.49 ? O15 HJI 202 A 1 HETATM 28 O O28 HJI . . . C 3 1.296 -0.085 14.856 1 34.11 ? O28 HJI 202 A 1 HETATM 29 O O29 HJI . . . C 3 2.969 0.09 16.384 1 24.77 ? O29 HJI 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 29 #