data_5SD2
#
_model_server_result.job_id            ZRY2QpaiVPe9wi_uD5ar9w 
_model_server_result.datetime_utc      '2024-11-25 16:29:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sd2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5SD2 
#
_exptl.entry_id    5SD2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SD2 
_cell.length_a            29.35 
_cell.length_b            67.34 
_cell.length_c            72.37 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5SD2 
_atom_sites.fract_transf_matrix[1][1]    0.034072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01485 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 201 160 NAP NAP . 
C 3 HJI A 1 202 161 HJI LIG . 
D 4 EDO A 1 203 163 EDO EDO . 
E 5 HOH A 1 301 302 HOH HOH . 
E 5 HOH A 2 302 208 HOH HOH . 
E 5 HOH A 3 303 275 HOH HOH . 
E 5 HOH A 4 304 280 HOH HOH . 
E 5 HOH A 5 305 267 HOH HOH . 
E 5 HOH A 6 306 213 HOH HOH . 
E 5 HOH A 7 307 278 HOH HOH . 
E 5 HOH A 8 308 271 HOH HOH . 
E 5 HOH A 9 309 236 HOH HOH . 
E 5 HOH A 10 310 200 HOH HOH . 
E 5 HOH A 11 311 314 HOH HOH . 
E 5 HOH A 12 312 190 HOH HOH . 
E 5 HOH A 13 313 270 HOH HOH . 
E 5 HOH A 14 314 237 HOH HOH . 
E 5 HOH A 15 315 219 HOH HOH . 
E 5 HOH A 16 316 321 HOH HOH . 
E 5 HOH A 17 317 163 HOH HOH . 
E 5 HOH A 18 318 165 HOH HOH . 
E 5 HOH A 19 319 228 HOH HOH . 
E 5 HOH A 20 320 207 HOH HOH . 
E 5 HOH A 21 321 238 HOH HOH . 
E 5 HOH A 22 322 215 HOH HOH . 
E 5 HOH A 23 323 240 HOH HOH . 
E 5 HOH A 24 324 204 HOH HOH . 
E 5 HOH A 25 325 221 HOH HOH . 
E 5 HOH A 26 326 307 HOH HOH . 
E 5 HOH A 27 327 194 HOH HOH . 
E 5 HOH A 28 328 295 HOH HOH . 
E 5 HOH A 29 329 244 HOH HOH . 
E 5 HOH A 30 330 305 HOH HOH . 
E 5 HOH A 31 331 248 HOH HOH . 
E 5 HOH A 32 332 188 HOH HOH . 
E 5 HOH A 33 333 196 HOH HOH . 
E 5 HOH A 34 334 193 HOH HOH . 
E 5 HOH A 35 335 191 HOH HOH . 
E 5 HOH A 36 336 182 HOH HOH . 
E 5 HOH A 37 337 209 HOH HOH . 
E 5 HOH A 38 338 187 HOH HOH . 
E 5 HOH A 39 339 316 HOH HOH . 
E 5 HOH A 40 340 239 HOH HOH . 
E 5 HOH A 41 341 178 HOH HOH . 
E 5 HOH A 42 342 197 HOH HOH . 
E 5 HOH A 43 343 313 HOH HOH . 
E 5 HOH A 44 344 257 HOH HOH . 
E 5 HOH A 45 345 214 HOH HOH . 
E 5 HOH A 46 346 173 HOH HOH . 
E 5 HOH A 47 347 315 HOH HOH . 
E 5 HOH A 48 348 320 HOH HOH . 
E 5 HOH A 49 349 167 HOH HOH . 
E 5 HOH A 50 350 212 HOH HOH . 
E 5 HOH A 51 351 235 HOH HOH . 
E 5 HOH A 52 352 171 HOH HOH . 
E 5 HOH A 53 353 309 HOH HOH . 
E 5 HOH A 54 354 180 HOH HOH . 
E 5 HOH A 55 355 199 HOH HOH . 
E 5 HOH A 56 356 279 HOH HOH . 
E 5 HOH A 57 357 189 HOH HOH . 
E 5 HOH A 58 358 184 HOH HOH . 
E 5 HOH A 59 359 205 HOH HOH . 
E 5 HOH A 60 360 220 HOH HOH . 
E 5 HOH A 61 361 229 HOH HOH . 
E 5 HOH A 62 362 227 HOH HOH . 
E 5 HOH A 63 363 251 HOH HOH . 
E 5 HOH A 64 364 168 HOH HOH . 
E 5 HOH A 65 365 247 HOH HOH . 
E 5 HOH A 66 366 170 HOH HOH . 
E 5 HOH A 67 367 242 HOH HOH . 
E 5 HOH A 68 368 195 HOH HOH . 
E 5 HOH A 69 369 301 HOH HOH . 
E 5 HOH A 70 370 260 HOH HOH . 
E 5 HOH A 71 371 172 HOH HOH . 
E 5 HOH A 72 372 202 HOH HOH . 
E 5 HOH A 73 373 269 HOH HOH . 
E 5 HOH A 74 374 266 HOH HOH . 
E 5 HOH A 75 375 177 HOH HOH . 
E 5 HOH A 76 376 222 HOH HOH . 
E 5 HOH A 77 377 186 HOH HOH . 
E 5 HOH A 78 378 234 HOH HOH . 
E 5 HOH A 79 379 206 HOH HOH . 
E 5 HOH A 80 380 185 HOH HOH . 
E 5 HOH A 81 381 174 HOH HOH . 
E 5 HOH A 82 382 319 HOH HOH . 
E 5 HOH A 83 383 312 HOH HOH . 
E 5 HOH A 84 384 198 HOH HOH . 
E 5 HOH A 85 385 169 HOH HOH . 
E 5 HOH A 86 386 261 HOH HOH . 
E 5 HOH A 87 387 328 HOH HOH . 
E 5 HOH A 88 388 201 HOH HOH . 
E 5 HOH A 89 389 232 HOH HOH . 
E 5 HOH A 90 390 243 HOH HOH . 
E 5 HOH A 91 391 294 HOH HOH . 
E 5 HOH A 92 392 217 HOH HOH . 
E 5 HOH A 93 393 233 HOH HOH . 
E 5 HOH A 94 394 310 HOH HOH . 
E 5 HOH A 95 395 231 HOH HOH . 
E 5 HOH A 96 396 277 HOH HOH . 
E 5 HOH A 97 397 308 HOH HOH . 
E 5 HOH A 98 398 254 HOH HOH . 
E 5 HOH A 99 399 183 HOH HOH . 
E 5 HOH A 100 400 297 HOH HOH . 
E 5 HOH A 101 401 317 HOH HOH . 
E 5 HOH A 102 402 224 HOH HOH . 
E 5 HOH A 103 403 326 HOH HOH . 
E 5 HOH A 104 404 216 HOH HOH . 
E 5 HOH A 105 405 296 HOH HOH . 
E 5 HOH A 106 406 298 HOH HOH . 
E 5 HOH A 107 407 258 HOH HOH . 
E 5 HOH A 108 408 230 HOH HOH . 
E 5 HOH A 109 409 265 HOH HOH . 
E 5 HOH A 110 410 166 HOH HOH . 
E 5 HOH A 111 411 263 HOH HOH . 
E 5 HOH A 112 412 250 HOH HOH . 
E 5 HOH A 113 413 246 HOH HOH . 
E 5 HOH A 114 414 318 HOH HOH . 
E 5 HOH A 115 415 304 HOH HOH . 
E 5 HOH A 116 416 192 HOH HOH . 
E 5 HOH A 117 417 322 HOH HOH . 
E 5 HOH A 118 418 226 HOH HOH . 
E 5 HOH A 119 419 311 HOH HOH . 
E 5 HOH A 120 420 223 HOH HOH . 
E 5 HOH A 121 421 255 HOH HOH . 
E 5 HOH A 122 422 323 HOH HOH . 
E 5 HOH A 123 423 327 HOH HOH . 
E 5 HOH A 124 424 325 HOH HOH . 
E 5 HOH A 125 425 288 HOH HOH . 
E 5 HOH A 126 426 306 HOH HOH . 
E 5 HOH A 127 427 324 HOH HOH . 
E 5 HOH A 128 428 291 HOH HOH . 
E 5 HOH A 129 429 281 HOH HOH . 
E 5 HOH A 130 430 256 HOH HOH . 
E 5 HOH A 131 431 253 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 16.866 12.963 22.425 1 24.42 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . D 4 18.012 12.871 21.568 1 33.22 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . D 4 17.216 12.396 23.797 1 27.06 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . D 4 18.635 12.499 23.988 1 35.05 ? O2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           4 
#