data_5SD3 # _model_server_result.job_id DgMgLVYhuEAviOcP0R1gKA _model_server_result.datetime_utc '2024-11-25 11:32:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5SD3 # _exptl.entry_id 5SD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD3 _cell.length_a 29.56 _cell.length_b 67.43 _cell.length_c 72.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5SD3 _atom_sites.fract_transf_matrix[1][1] 0.033829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 H9I A 1 202 161 H9I 214 . D 4 EDO A 1 203 162 EDO EDO . E 4 EDO A 1 204 164 EDO EDO . F 4 EDO A 1 205 165 EDO EDO . G 4 EDO A 1 206 166 EDO EDO . H 4 EDO A 1 207 1 EDO EDO . I 5 HOH A 1 301 33 HOH HOH . I 5 HOH A 2 302 20 HOH HOH . I 5 HOH A 3 303 1 HOH HOH . I 5 HOH A 4 304 5 HOH HOH . I 5 HOH A 5 305 4 HOH HOH . I 5 HOH A 6 306 172 HOH HOH . I 5 HOH A 7 307 153 HOH HOH . I 5 HOH A 8 308 2 HOH HOH . I 5 HOH A 9 309 195 HOH HOH . I 5 HOH A 10 310 147 HOH HOH . I 5 HOH A 11 311 155 HOH HOH . I 5 HOH A 12 312 49 HOH HOH . I 5 HOH A 13 313 188 HOH HOH . I 5 HOH A 14 314 191 HOH HOH . I 5 HOH A 15 315 47 HOH HOH . I 5 HOH A 16 316 137 HOH HOH . I 5 HOH A 17 317 183 HOH HOH . I 5 HOH A 18 318 135 HOH HOH . I 5 HOH A 19 319 75 HOH HOH . I 5 HOH A 20 320 15 HOH HOH . I 5 HOH A 21 321 26 HOH HOH . I 5 HOH A 22 322 189 HOH HOH . I 5 HOH A 23 323 94 HOH HOH . I 5 HOH A 24 324 159 HOH HOH . I 5 HOH A 25 325 31 HOH HOH . I 5 HOH A 26 326 100 HOH HOH . I 5 HOH A 27 327 27 HOH HOH . I 5 HOH A 28 328 115 HOH HOH . I 5 HOH A 29 329 43 HOH HOH . I 5 HOH A 30 330 186 HOH HOH . I 5 HOH A 31 331 113 HOH HOH . I 5 HOH A 32 332 133 HOH HOH . I 5 HOH A 33 333 132 HOH HOH . I 5 HOH A 34 334 122 HOH HOH . I 5 HOH A 35 335 76 HOH HOH . I 5 HOH A 36 336 85 HOH HOH . I 5 HOH A 37 337 221 HOH HOH . I 5 HOH A 38 338 139 HOH HOH . I 5 HOH A 39 339 196 HOH HOH . I 5 HOH A 40 340 12 HOH HOH . I 5 HOH A 41 341 130 HOH HOH . I 5 HOH A 42 342 35 HOH HOH . I 5 HOH A 43 343 98 HOH HOH . I 5 HOH A 44 344 171 HOH HOH . I 5 HOH A 45 345 125 HOH HOH . I 5 HOH A 46 346 103 HOH HOH . I 5 HOH A 47 347 116 HOH HOH . I 5 HOH A 48 348 104 HOH HOH . I 5 HOH A 49 349 89 HOH HOH . I 5 HOH A 50 350 102 HOH HOH . I 5 HOH A 51 351 7 HOH HOH . I 5 HOH A 52 352 96 HOH HOH . I 5 HOH A 53 353 99 HOH HOH . I 5 HOH A 54 354 68 HOH HOH . I 5 HOH A 55 355 150 HOH HOH . I 5 HOH A 56 356 149 HOH HOH . I 5 HOH A 57 357 194 HOH HOH . I 5 HOH A 58 358 119 HOH HOH . I 5 HOH A 59 359 110 HOH HOH . I 5 HOH A 60 360 8 HOH HOH . I 5 HOH A 61 361 126 HOH HOH . I 5 HOH A 62 362 168 HOH HOH . I 5 HOH A 63 363 114 HOH HOH . I 5 HOH A 64 364 79 HOH HOH . I 5 HOH A 65 365 124 HOH HOH . I 5 HOH A 66 366 167 HOH HOH . I 5 HOH A 67 367 118 HOH HOH . I 5 HOH A 68 368 101 HOH HOH . I 5 HOH A 69 369 157 HOH HOH . I 5 HOH A 70 370 92 HOH HOH . I 5 HOH A 71 371 143 HOH HOH . I 5 HOH A 72 372 87 HOH HOH . I 5 HOH A 73 373 108 HOH HOH . I 5 HOH A 74 374 213 HOH HOH . I 5 HOH A 75 375 97 HOH HOH . I 5 HOH A 76 376 62 HOH HOH . I 5 HOH A 77 377 105 HOH HOH . I 5 HOH A 78 378 28 HOH HOH . I 5 HOH A 79 379 176 HOH HOH . I 5 HOH A 80 380 192 HOH HOH . I 5 HOH A 81 381 91 HOH HOH . I 5 HOH A 82 382 152 HOH HOH . I 5 HOH A 83 383 120 HOH HOH . I 5 HOH A 84 384 177 HOH HOH . I 5 HOH A 85 385 164 HOH HOH . I 5 HOH A 86 386 70 HOH HOH . I 5 HOH A 87 387 144 HOH HOH . I 5 HOH A 88 388 112 HOH HOH . I 5 HOH A 89 389 156 HOH HOH . I 5 HOH A 90 390 201 HOH HOH . I 5 HOH A 91 391 216 HOH HOH . I 5 HOH A 92 392 95 HOH HOH . I 5 HOH A 93 393 71 HOH HOH . I 5 HOH A 94 394 13 HOH HOH . I 5 HOH A 95 395 138 HOH HOH . I 5 HOH A 96 396 19 HOH HOH . I 5 HOH A 97 397 145 HOH HOH . I 5 HOH A 98 398 106 HOH HOH . I 5 HOH A 99 399 107 HOH HOH . I 5 HOH A 100 400 32 HOH HOH . I 5 HOH A 101 401 44 HOH HOH . I 5 HOH A 102 402 90 HOH HOH . I 5 HOH A 103 403 170 HOH HOH . I 5 HOH A 104 404 40 HOH HOH . I 5 HOH A 105 405 88 HOH HOH . I 5 HOH A 106 406 209 HOH HOH . I 5 HOH A 107 407 93 HOH HOH . I 5 HOH A 108 408 187 HOH HOH . I 5 HOH A 109 409 9 HOH HOH . I 5 HOH A 110 410 175 HOH HOH . I 5 HOH A 111 411 29 HOH HOH . I 5 HOH A 112 412 111 HOH HOH . I 5 HOH A 113 413 166 HOH HOH . I 5 HOH A 114 414 223 HOH HOH . I 5 HOH A 115 415 136 HOH HOH . I 5 HOH A 116 416 128 HOH HOH . I 5 HOH A 117 417 174 HOH HOH . I 5 HOH A 118 418 61 HOH HOH . I 5 HOH A 119 419 160 HOH HOH . I 5 HOH A 120 420 11 HOH HOH . I 5 HOH A 121 421 181 HOH HOH . I 5 HOH A 122 422 46 HOH HOH . I 5 HOH A 123 423 17 HOH HOH . I 5 HOH A 124 424 141 HOH HOH . I 5 HOH A 125 425 182 HOH HOH . I 5 HOH A 126 426 204 HOH HOH . I 5 HOH A 127 427 198 HOH HOH . I 5 HOH A 128 428 16 HOH HOH . I 5 HOH A 129 429 121 HOH HOH . I 5 HOH A 130 430 3 HOH HOH . I 5 HOH A 131 431 18 HOH HOH . I 5 HOH A 132 432 210 HOH HOH . I 5 HOH A 133 433 131 HOH HOH . I 5 HOH A 134 434 86 HOH HOH . I 5 HOH A 135 435 212 HOH HOH . I 5 HOH A 136 436 148 HOH HOH . I 5 HOH A 137 437 14 HOH HOH . I 5 HOH A 138 438 37 HOH HOH . I 5 HOH A 139 439 142 HOH HOH . I 5 HOH A 140 440 42 HOH HOH . I 5 HOH A 141 441 151 HOH HOH . I 5 HOH A 142 442 162 HOH HOH . I 5 HOH A 143 443 179 HOH HOH . I 5 HOH A 144 444 190 HOH HOH . I 5 HOH A 145 445 73 HOH HOH . I 5 HOH A 146 446 24 HOH HOH . I 5 HOH A 147 447 22 HOH HOH . I 5 HOH A 148 448 180 HOH HOH . I 5 HOH A 149 449 81 HOH HOH . I 5 HOH A 150 450 30 HOH HOH . I 5 HOH A 151 451 211 HOH HOH . I 5 HOH A 152 452 178 HOH HOH . I 5 HOH A 153 453 205 HOH HOH . I 5 HOH A 154 454 82 HOH HOH . I 5 HOH A 155 455 117 HOH HOH . I 5 HOH A 156 456 21 HOH HOH . I 5 HOH A 157 457 10 HOH HOH . I 5 HOH A 158 458 52 HOH HOH . I 5 HOH A 159 459 219 HOH HOH . I 5 HOH A 160 460 154 HOH HOH . I 5 HOH A 161 461 203 HOH HOH . I 5 HOH A 162 462 34 HOH HOH . I 5 HOH A 163 463 218 HOH HOH . I 5 HOH A 164 464 207 HOH HOH . I 5 HOH A 165 465 193 HOH HOH . I 5 HOH A 166 466 45 HOH HOH . I 5 HOH A 167 467 80 HOH HOH . I 5 HOH A 168 468 109 HOH HOH . I 5 HOH A 169 469 158 HOH HOH . I 5 HOH A 170 470 39 HOH HOH . I 5 HOH A 171 471 206 HOH HOH . I 5 HOH A 172 472 67 HOH HOH . I 5 HOH A 173 473 57 HOH HOH . I 5 HOH A 174 474 214 HOH HOH . I 5 HOH A 175 475 146 HOH HOH . I 5 HOH A 176 476 165 HOH HOH . I 5 HOH A 177 477 83 HOH HOH . I 5 HOH A 178 478 129 HOH HOH . I 5 HOH A 179 479 60 HOH HOH . I 5 HOH A 180 480 202 HOH HOH . I 5 HOH A 181 481 23 HOH HOH . I 5 HOH A 182 482 55 HOH HOH . I 5 HOH A 183 483 69 HOH HOH . I 5 HOH A 184 484 173 HOH HOH . I 5 HOH A 185 485 217 HOH HOH . I 5 HOH A 186 486 197 HOH HOH . I 5 HOH A 187 487 58 HOH HOH . I 5 HOH A 188 488 59 HOH HOH . I 5 HOH A 189 489 41 HOH HOH . I 5 HOH A 190 490 66 HOH HOH . I 5 HOH A 191 491 54 HOH HOH . I 5 HOH A 192 492 215 HOH HOH . I 5 HOH A 193 493 199 HOH HOH . I 5 HOH A 194 494 169 HOH HOH . I 5 HOH A 195 495 222 HOH HOH . I 5 HOH A 196 496 184 HOH HOH . I 5 HOH A 197 497 185 HOH HOH . I 5 HOH A 198 498 140 HOH HOH . I 5 HOH A 199 499 25 HOH HOH . I 5 HOH A 200 500 74 HOH HOH . I 5 HOH A 201 501 163 HOH HOH . I 5 HOH A 202 502 53 HOH HOH . I 5 HOH A 203 503 134 HOH HOH . I 5 HOH A 204 504 72 HOH HOH . I 5 HOH A 205 505 208 HOH HOH . I 5 HOH A 206 506 200 HOH HOH . I 5 HOH A 207 507 6 HOH HOH . I 5 HOH A 208 508 161 HOH HOH . I 5 HOH A 209 509 123 HOH HOH . I 5 HOH A 210 510 65 HOH HOH . I 5 HOH A 211 511 220 HOH HOH . I 5 HOH A 212 512 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 5.151 -1.087 -1.266 1 22.43 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 4 5.9 -0.592 -0.156 1 21.99 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 4 5.182 -0.106 -2.431 1 16.73 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 4 6.486 0.468 -2.577 1 17.71 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #