data_5SD4 # _model_server_result.job_id m80oVigyNZSlB5MEaBUf6A _model_server_result.datetime_utc '2024-11-25 07:25:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5SD4 # _exptl.entry_id 5SD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD4 _cell.length_a 29.53 _cell.length_b 66.92 _cell.length_c 72.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5SD4 _atom_sites.fract_transf_matrix[1][1] 0.033864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 160 NAP NAP . C 3 HVR A 1 202 161 HVR 218 . D 4 EDO A 1 203 162 EDO EDO . E 4 EDO A 1 204 163 EDO EDO . F 4 EDO A 1 205 164 EDO EDO . G 4 EDO A 1 206 165 EDO EDO . H 4 EDO A 1 207 166 EDO EDO . I 5 CL A 1 208 167 CL CL . J 6 HOH A 1 301 142 HOH HOH . J 6 HOH A 2 302 132 HOH HOH . J 6 HOH A 3 303 136 HOH HOH . J 6 HOH A 4 304 181 HOH HOH . J 6 HOH A 5 305 71 HOH HOH . J 6 HOH A 6 306 24 HOH HOH . J 6 HOH A 7 307 190 HOH HOH . J 6 HOH A 8 308 164 HOH HOH . J 6 HOH A 9 309 191 HOH HOH . J 6 HOH A 10 310 63 HOH HOH . J 6 HOH A 11 311 67 HOH HOH . J 6 HOH A 12 312 198 HOH HOH . J 6 HOH A 13 313 107 HOH HOH . J 6 HOH A 14 314 12 HOH HOH . J 6 HOH A 15 315 177 HOH HOH . J 6 HOH A 16 316 129 HOH HOH . J 6 HOH A 17 317 86 HOH HOH . J 6 HOH A 18 318 73 HOH HOH . J 6 HOH A 19 319 156 HOH HOH . J 6 HOH A 20 320 171 HOH HOH . J 6 HOH A 21 321 19 HOH HOH . J 6 HOH A 22 322 204 HOH HOH . J 6 HOH A 23 323 167 HOH HOH . J 6 HOH A 24 324 52 HOH HOH . J 6 HOH A 25 325 45 HOH HOH . J 6 HOH A 26 326 41 HOH HOH . J 6 HOH A 27 327 166 HOH HOH . J 6 HOH A 28 328 69 HOH HOH . J 6 HOH A 29 329 68 HOH HOH . J 6 HOH A 30 330 55 HOH HOH . J 6 HOH A 31 331 185 HOH HOH . J 6 HOH A 32 332 62 HOH HOH . J 6 HOH A 33 333 199 HOH HOH . J 6 HOH A 34 334 11 HOH HOH . J 6 HOH A 35 335 205 HOH HOH . J 6 HOH A 36 336 16 HOH HOH . J 6 HOH A 37 337 163 HOH HOH . J 6 HOH A 38 338 154 HOH HOH . J 6 HOH A 39 339 23 HOH HOH . J 6 HOH A 40 340 147 HOH HOH . J 6 HOH A 41 341 50 HOH HOH . J 6 HOH A 42 342 197 HOH HOH . J 6 HOH A 43 343 178 HOH HOH . J 6 HOH A 44 344 10 HOH HOH . J 6 HOH A 45 345 39 HOH HOH . J 6 HOH A 46 346 195 HOH HOH . J 6 HOH A 47 347 100 HOH HOH . J 6 HOH A 48 348 31 HOH HOH . J 6 HOH A 49 349 151 HOH HOH . J 6 HOH A 50 350 4 HOH HOH . J 6 HOH A 51 351 105 HOH HOH . J 6 HOH A 52 352 141 HOH HOH . J 6 HOH A 53 353 72 HOH HOH . J 6 HOH A 54 354 99 HOH HOH . J 6 HOH A 55 355 28 HOH HOH . J 6 HOH A 56 356 33 HOH HOH . J 6 HOH A 57 357 43 HOH HOH . J 6 HOH A 58 358 74 HOH HOH . J 6 HOH A 59 359 7 HOH HOH . J 6 HOH A 60 360 143 HOH HOH . J 6 HOH A 61 361 162 HOH HOH . J 6 HOH A 62 362 17 HOH HOH . J 6 HOH A 63 363 49 HOH HOH . J 6 HOH A 64 364 51 HOH HOH . J 6 HOH A 65 365 97 HOH HOH . J 6 HOH A 66 366 25 HOH HOH . J 6 HOH A 67 367 32 HOH HOH . J 6 HOH A 68 368 78 HOH HOH . J 6 HOH A 69 369 42 HOH HOH . J 6 HOH A 70 370 30 HOH HOH . J 6 HOH A 71 371 8 HOH HOH . J 6 HOH A 72 372 70 HOH HOH . J 6 HOH A 73 373 98 HOH HOH . J 6 HOH A 74 374 5 HOH HOH . J 6 HOH A 75 375 22 HOH HOH . J 6 HOH A 76 376 64 HOH HOH . J 6 HOH A 77 377 9 HOH HOH . J 6 HOH A 78 378 29 HOH HOH . J 6 HOH A 79 379 85 HOH HOH . J 6 HOH A 80 380 34 HOH HOH . J 6 HOH A 81 381 76 HOH HOH . J 6 HOH A 82 382 109 HOH HOH . J 6 HOH A 83 383 27 HOH HOH . J 6 HOH A 84 384 192 HOH HOH . J 6 HOH A 85 385 149 HOH HOH . J 6 HOH A 86 386 84 HOH HOH . J 6 HOH A 87 387 14 HOH HOH . J 6 HOH A 88 388 13 HOH HOH . J 6 HOH A 89 389 77 HOH HOH . J 6 HOH A 90 390 38 HOH HOH . J 6 HOH A 91 391 89 HOH HOH . J 6 HOH A 92 392 182 HOH HOH . J 6 HOH A 93 393 54 HOH HOH . J 6 HOH A 94 394 219 HOH HOH . J 6 HOH A 95 395 2 HOH HOH . J 6 HOH A 96 396 35 HOH HOH . J 6 HOH A 97 397 131 HOH HOH . J 6 HOH A 98 398 46 HOH HOH . J 6 HOH A 99 399 57 HOH HOH . J 6 HOH A 100 400 103 HOH HOH . J 6 HOH A 101 401 15 HOH HOH . J 6 HOH A 102 402 6 HOH HOH . J 6 HOH A 103 403 135 HOH HOH . J 6 HOH A 104 404 114 HOH HOH . J 6 HOH A 105 405 122 HOH HOH . J 6 HOH A 106 406 21 HOH HOH . J 6 HOH A 107 407 3 HOH HOH . J 6 HOH A 108 408 145 HOH HOH . J 6 HOH A 109 409 221 HOH HOH . J 6 HOH A 110 410 61 HOH HOH . J 6 HOH A 111 411 40 HOH HOH . J 6 HOH A 112 412 26 HOH HOH . J 6 HOH A 113 413 159 HOH HOH . J 6 HOH A 114 414 94 HOH HOH . J 6 HOH A 115 415 53 HOH HOH . J 6 HOH A 116 416 225 HOH HOH . J 6 HOH A 117 417 165 HOH HOH . J 6 HOH A 118 418 80 HOH HOH . J 6 HOH A 119 419 124 HOH HOH . J 6 HOH A 120 420 150 HOH HOH . J 6 HOH A 121 421 58 HOH HOH . J 6 HOH A 122 422 121 HOH HOH . J 6 HOH A 123 423 125 HOH HOH . J 6 HOH A 124 424 113 HOH HOH . J 6 HOH A 125 425 152 HOH HOH . J 6 HOH A 126 426 186 HOH HOH . J 6 HOH A 127 427 87 HOH HOH . J 6 HOH A 128 428 138 HOH HOH . J 6 HOH A 129 429 127 HOH HOH . J 6 HOH A 130 430 120 HOH HOH . J 6 HOH A 131 431 36 HOH HOH . J 6 HOH A 132 432 106 HOH HOH . J 6 HOH A 133 433 213 HOH HOH . J 6 HOH A 134 434 123 HOH HOH . J 6 HOH A 135 435 134 HOH HOH . J 6 HOH A 136 436 193 HOH HOH . J 6 HOH A 137 437 1 HOH HOH . J 6 HOH A 138 438 144 HOH HOH . J 6 HOH A 139 439 91 HOH HOH . J 6 HOH A 140 440 66 HOH HOH . J 6 HOH A 141 441 158 HOH HOH . J 6 HOH A 142 442 88 HOH HOH . J 6 HOH A 143 443 60 HOH HOH . J 6 HOH A 144 444 196 HOH HOH . J 6 HOH A 145 445 140 HOH HOH . J 6 HOH A 146 446 93 HOH HOH . J 6 HOH A 147 447 108 HOH HOH . J 6 HOH A 148 448 116 HOH HOH . J 6 HOH A 149 449 44 HOH HOH . J 6 HOH A 150 450 168 HOH HOH . J 6 HOH A 151 451 207 HOH HOH . J 6 HOH A 152 452 20 HOH HOH . J 6 HOH A 153 453 112 HOH HOH . J 6 HOH A 154 454 208 HOH HOH . J 6 HOH A 155 455 170 HOH HOH . J 6 HOH A 156 456 161 HOH HOH . J 6 HOH A 157 457 187 HOH HOH . J 6 HOH A 158 458 102 HOH HOH . J 6 HOH A 159 459 48 HOH HOH . J 6 HOH A 160 460 209 HOH HOH . J 6 HOH A 161 461 83 HOH HOH . J 6 HOH A 162 462 146 HOH HOH . J 6 HOH A 163 463 220 HOH HOH . J 6 HOH A 164 464 169 HOH HOH . J 6 HOH A 165 465 206 HOH HOH . J 6 HOH A 166 466 119 HOH HOH . J 6 HOH A 167 467 212 HOH HOH . J 6 HOH A 168 468 176 HOH HOH . J 6 HOH A 169 469 160 HOH HOH . J 6 HOH A 170 470 92 HOH HOH . J 6 HOH A 171 471 59 HOH HOH . J 6 HOH A 172 472 18 HOH HOH . J 6 HOH A 173 473 172 HOH HOH . J 6 HOH A 174 474 217 HOH HOH . J 6 HOH A 175 475 223 HOH HOH . J 6 HOH A 176 476 155 HOH HOH . J 6 HOH A 177 477 194 HOH HOH . J 6 HOH A 178 478 153 HOH HOH . J 6 HOH A 179 479 173 HOH HOH . J 6 HOH A 180 480 118 HOH HOH . J 6 HOH A 181 481 126 HOH HOH . J 6 HOH A 182 482 90 HOH HOH . J 6 HOH A 183 483 148 HOH HOH . J 6 HOH A 184 484 184 HOH HOH . J 6 HOH A 185 485 82 HOH HOH . J 6 HOH A 186 486 157 HOH HOH . J 6 HOH A 187 487 95 HOH HOH . J 6 HOH A 188 488 115 HOH HOH . J 6 HOH A 189 489 175 HOH HOH . J 6 HOH A 190 490 111 HOH HOH . J 6 HOH A 191 491 180 HOH HOH . J 6 HOH A 192 492 65 HOH HOH . J 6 HOH A 193 493 117 HOH HOH . J 6 HOH A 194 494 222 HOH HOH . J 6 HOH A 195 495 130 HOH HOH . J 6 HOH A 196 496 79 HOH HOH . J 6 HOH A 197 497 104 HOH HOH . J 6 HOH A 198 498 224 HOH HOH . J 6 HOH A 199 499 214 HOH HOH . J 6 HOH A 200 500 179 HOH HOH . J 6 HOH A 201 501 128 HOH HOH . J 6 HOH A 202 502 139 HOH HOH . J 6 HOH A 203 503 189 HOH HOH . J 6 HOH A 204 504 137 HOH HOH . J 6 HOH A 205 505 211 HOH HOH . J 6 HOH A 206 506 216 HOH HOH . J 6 HOH A 207 507 133 HOH HOH . J 6 HOH A 208 508 200 HOH HOH . J 6 HOH A 209 509 101 HOH HOH . J 6 HOH A 210 510 81 HOH HOH . J 6 HOH A 211 511 56 HOH HOH . J 6 HOH A 212 512 218 HOH HOH . J 6 HOH A 213 513 96 HOH HOH . J 6 HOH A 214 514 210 HOH HOH . J 6 HOH A 215 515 201 HOH HOH . J 6 HOH A 216 516 188 HOH HOH . J 6 HOH A 217 517 37 HOH HOH . J 6 HOH A 218 518 110 HOH HOH . J 6 HOH A 219 519 183 HOH HOH . J 6 HOH A 220 520 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 16.952 -5.911 19.868 1 20 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 4 15.582 -6.307 19.717 1 20 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 4 17.774 -6.444 18.703 1 20 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 4 17.142 -6.082 17.47 1 20 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #