data_5SD4
#
_model_server_result.job_id            83IDqdRHcOzjnNhXtAvN9w 
_model_server_result.datetime_utc      '2024-11-25 07:32:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sd4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":205}' 
#
_entry.id    5SD4 
#
_exptl.entry_id    5SD4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SD4 
_cell.length_a            29.53 
_cell.length_b            66.92 
_cell.length_c            72.04 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SD4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5SD4 
_atom_sites.fract_transf_matrix[1][1]    0.033864 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014943 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 201 160 NAP NAP . 
C 3 HVR A 1 202 161 HVR 218 . 
D 4 EDO A 1 203 162 EDO EDO . 
E 4 EDO A 1 204 163 EDO EDO . 
F 4 EDO A 1 205 164 EDO EDO . 
G 4 EDO A 1 206 165 EDO EDO . 
H 4 EDO A 1 207 166 EDO EDO . 
I 5 CL A 1 208 167 CL CL . 
J 6 HOH A 1 301 142 HOH HOH . 
J 6 HOH A 2 302 132 HOH HOH . 
J 6 HOH A 3 303 136 HOH HOH . 
J 6 HOH A 4 304 181 HOH HOH . 
J 6 HOH A 5 305 71 HOH HOH . 
J 6 HOH A 6 306 24 HOH HOH . 
J 6 HOH A 7 307 190 HOH HOH . 
J 6 HOH A 8 308 164 HOH HOH . 
J 6 HOH A 9 309 191 HOH HOH . 
J 6 HOH A 10 310 63 HOH HOH . 
J 6 HOH A 11 311 67 HOH HOH . 
J 6 HOH A 12 312 198 HOH HOH . 
J 6 HOH A 13 313 107 HOH HOH . 
J 6 HOH A 14 314 12 HOH HOH . 
J 6 HOH A 15 315 177 HOH HOH . 
J 6 HOH A 16 316 129 HOH HOH . 
J 6 HOH A 17 317 86 HOH HOH . 
J 6 HOH A 18 318 73 HOH HOH . 
J 6 HOH A 19 319 156 HOH HOH . 
J 6 HOH A 20 320 171 HOH HOH . 
J 6 HOH A 21 321 19 HOH HOH . 
J 6 HOH A 22 322 204 HOH HOH . 
J 6 HOH A 23 323 167 HOH HOH . 
J 6 HOH A 24 324 52 HOH HOH . 
J 6 HOH A 25 325 45 HOH HOH . 
J 6 HOH A 26 326 41 HOH HOH . 
J 6 HOH A 27 327 166 HOH HOH . 
J 6 HOH A 28 328 69 HOH HOH . 
J 6 HOH A 29 329 68 HOH HOH . 
J 6 HOH A 30 330 55 HOH HOH . 
J 6 HOH A 31 331 185 HOH HOH . 
J 6 HOH A 32 332 62 HOH HOH . 
J 6 HOH A 33 333 199 HOH HOH . 
J 6 HOH A 34 334 11 HOH HOH . 
J 6 HOH A 35 335 205 HOH HOH . 
J 6 HOH A 36 336 16 HOH HOH . 
J 6 HOH A 37 337 163 HOH HOH . 
J 6 HOH A 38 338 154 HOH HOH . 
J 6 HOH A 39 339 23 HOH HOH . 
J 6 HOH A 40 340 147 HOH HOH . 
J 6 HOH A 41 341 50 HOH HOH . 
J 6 HOH A 42 342 197 HOH HOH . 
J 6 HOH A 43 343 178 HOH HOH . 
J 6 HOH A 44 344 10 HOH HOH . 
J 6 HOH A 45 345 39 HOH HOH . 
J 6 HOH A 46 346 195 HOH HOH . 
J 6 HOH A 47 347 100 HOH HOH . 
J 6 HOH A 48 348 31 HOH HOH . 
J 6 HOH A 49 349 151 HOH HOH . 
J 6 HOH A 50 350 4 HOH HOH . 
J 6 HOH A 51 351 105 HOH HOH . 
J 6 HOH A 52 352 141 HOH HOH . 
J 6 HOH A 53 353 72 HOH HOH . 
J 6 HOH A 54 354 99 HOH HOH . 
J 6 HOH A 55 355 28 HOH HOH . 
J 6 HOH A 56 356 33 HOH HOH . 
J 6 HOH A 57 357 43 HOH HOH . 
J 6 HOH A 58 358 74 HOH HOH . 
J 6 HOH A 59 359 7 HOH HOH . 
J 6 HOH A 60 360 143 HOH HOH . 
J 6 HOH A 61 361 162 HOH HOH . 
J 6 HOH A 62 362 17 HOH HOH . 
J 6 HOH A 63 363 49 HOH HOH . 
J 6 HOH A 64 364 51 HOH HOH . 
J 6 HOH A 65 365 97 HOH HOH . 
J 6 HOH A 66 366 25 HOH HOH . 
J 6 HOH A 67 367 32 HOH HOH . 
J 6 HOH A 68 368 78 HOH HOH . 
J 6 HOH A 69 369 42 HOH HOH . 
J 6 HOH A 70 370 30 HOH HOH . 
J 6 HOH A 71 371 8 HOH HOH . 
J 6 HOH A 72 372 70 HOH HOH . 
J 6 HOH A 73 373 98 HOH HOH . 
J 6 HOH A 74 374 5 HOH HOH . 
J 6 HOH A 75 375 22 HOH HOH . 
J 6 HOH A 76 376 64 HOH HOH . 
J 6 HOH A 77 377 9 HOH HOH . 
J 6 HOH A 78 378 29 HOH HOH . 
J 6 HOH A 79 379 85 HOH HOH . 
J 6 HOH A 80 380 34 HOH HOH . 
J 6 HOH A 81 381 76 HOH HOH . 
J 6 HOH A 82 382 109 HOH HOH . 
J 6 HOH A 83 383 27 HOH HOH . 
J 6 HOH A 84 384 192 HOH HOH . 
J 6 HOH A 85 385 149 HOH HOH . 
J 6 HOH A 86 386 84 HOH HOH . 
J 6 HOH A 87 387 14 HOH HOH . 
J 6 HOH A 88 388 13 HOH HOH . 
J 6 HOH A 89 389 77 HOH HOH . 
J 6 HOH A 90 390 38 HOH HOH . 
J 6 HOH A 91 391 89 HOH HOH . 
J 6 HOH A 92 392 182 HOH HOH . 
J 6 HOH A 93 393 54 HOH HOH . 
J 6 HOH A 94 394 219 HOH HOH . 
J 6 HOH A 95 395 2 HOH HOH . 
J 6 HOH A 96 396 35 HOH HOH . 
J 6 HOH A 97 397 131 HOH HOH . 
J 6 HOH A 98 398 46 HOH HOH . 
J 6 HOH A 99 399 57 HOH HOH . 
J 6 HOH A 100 400 103 HOH HOH . 
J 6 HOH A 101 401 15 HOH HOH . 
J 6 HOH A 102 402 6 HOH HOH . 
J 6 HOH A 103 403 135 HOH HOH . 
J 6 HOH A 104 404 114 HOH HOH . 
J 6 HOH A 105 405 122 HOH HOH . 
J 6 HOH A 106 406 21 HOH HOH . 
J 6 HOH A 107 407 3 HOH HOH . 
J 6 HOH A 108 408 145 HOH HOH . 
J 6 HOH A 109 409 221 HOH HOH . 
J 6 HOH A 110 410 61 HOH HOH . 
J 6 HOH A 111 411 40 HOH HOH . 
J 6 HOH A 112 412 26 HOH HOH . 
J 6 HOH A 113 413 159 HOH HOH . 
J 6 HOH A 114 414 94 HOH HOH . 
J 6 HOH A 115 415 53 HOH HOH . 
J 6 HOH A 116 416 225 HOH HOH . 
J 6 HOH A 117 417 165 HOH HOH . 
J 6 HOH A 118 418 80 HOH HOH . 
J 6 HOH A 119 419 124 HOH HOH . 
J 6 HOH A 120 420 150 HOH HOH . 
J 6 HOH A 121 421 58 HOH HOH . 
J 6 HOH A 122 422 121 HOH HOH . 
J 6 HOH A 123 423 125 HOH HOH . 
J 6 HOH A 124 424 113 HOH HOH . 
J 6 HOH A 125 425 152 HOH HOH . 
J 6 HOH A 126 426 186 HOH HOH . 
J 6 HOH A 127 427 87 HOH HOH . 
J 6 HOH A 128 428 138 HOH HOH . 
J 6 HOH A 129 429 127 HOH HOH . 
J 6 HOH A 130 430 120 HOH HOH . 
J 6 HOH A 131 431 36 HOH HOH . 
J 6 HOH A 132 432 106 HOH HOH . 
J 6 HOH A 133 433 213 HOH HOH . 
J 6 HOH A 134 434 123 HOH HOH . 
J 6 HOH A 135 435 134 HOH HOH . 
J 6 HOH A 136 436 193 HOH HOH . 
J 6 HOH A 137 437 1 HOH HOH . 
J 6 HOH A 138 438 144 HOH HOH . 
J 6 HOH A 139 439 91 HOH HOH . 
J 6 HOH A 140 440 66 HOH HOH . 
J 6 HOH A 141 441 158 HOH HOH . 
J 6 HOH A 142 442 88 HOH HOH . 
J 6 HOH A 143 443 60 HOH HOH . 
J 6 HOH A 144 444 196 HOH HOH . 
J 6 HOH A 145 445 140 HOH HOH . 
J 6 HOH A 146 446 93 HOH HOH . 
J 6 HOH A 147 447 108 HOH HOH . 
J 6 HOH A 148 448 116 HOH HOH . 
J 6 HOH A 149 449 44 HOH HOH . 
J 6 HOH A 150 450 168 HOH HOH . 
J 6 HOH A 151 451 207 HOH HOH . 
J 6 HOH A 152 452 20 HOH HOH . 
J 6 HOH A 153 453 112 HOH HOH . 
J 6 HOH A 154 454 208 HOH HOH . 
J 6 HOH A 155 455 170 HOH HOH . 
J 6 HOH A 156 456 161 HOH HOH . 
J 6 HOH A 157 457 187 HOH HOH . 
J 6 HOH A 158 458 102 HOH HOH . 
J 6 HOH A 159 459 48 HOH HOH . 
J 6 HOH A 160 460 209 HOH HOH . 
J 6 HOH A 161 461 83 HOH HOH . 
J 6 HOH A 162 462 146 HOH HOH . 
J 6 HOH A 163 463 220 HOH HOH . 
J 6 HOH A 164 464 169 HOH HOH . 
J 6 HOH A 165 465 206 HOH HOH . 
J 6 HOH A 166 466 119 HOH HOH . 
J 6 HOH A 167 467 212 HOH HOH . 
J 6 HOH A 168 468 176 HOH HOH . 
J 6 HOH A 169 469 160 HOH HOH . 
J 6 HOH A 170 470 92 HOH HOH . 
J 6 HOH A 171 471 59 HOH HOH . 
J 6 HOH A 172 472 18 HOH HOH . 
J 6 HOH A 173 473 172 HOH HOH . 
J 6 HOH A 174 474 217 HOH HOH . 
J 6 HOH A 175 475 223 HOH HOH . 
J 6 HOH A 176 476 155 HOH HOH . 
J 6 HOH A 177 477 194 HOH HOH . 
J 6 HOH A 178 478 153 HOH HOH . 
J 6 HOH A 179 479 173 HOH HOH . 
J 6 HOH A 180 480 118 HOH HOH . 
J 6 HOH A 181 481 126 HOH HOH . 
J 6 HOH A 182 482 90 HOH HOH . 
J 6 HOH A 183 483 148 HOH HOH . 
J 6 HOH A 184 484 184 HOH HOH . 
J 6 HOH A 185 485 82 HOH HOH . 
J 6 HOH A 186 486 157 HOH HOH . 
J 6 HOH A 187 487 95 HOH HOH . 
J 6 HOH A 188 488 115 HOH HOH . 
J 6 HOH A 189 489 175 HOH HOH . 
J 6 HOH A 190 490 111 HOH HOH . 
J 6 HOH A 191 491 180 HOH HOH . 
J 6 HOH A 192 492 65 HOH HOH . 
J 6 HOH A 193 493 117 HOH HOH . 
J 6 HOH A 194 494 222 HOH HOH . 
J 6 HOH A 195 495 130 HOH HOH . 
J 6 HOH A 196 496 79 HOH HOH . 
J 6 HOH A 197 497 104 HOH HOH . 
J 6 HOH A 198 498 224 HOH HOH . 
J 6 HOH A 199 499 214 HOH HOH . 
J 6 HOH A 200 500 179 HOH HOH . 
J 6 HOH A 201 501 128 HOH HOH . 
J 6 HOH A 202 502 139 HOH HOH . 
J 6 HOH A 203 503 189 HOH HOH . 
J 6 HOH A 204 504 137 HOH HOH . 
J 6 HOH A 205 505 211 HOH HOH . 
J 6 HOH A 206 506 216 HOH HOH . 
J 6 HOH A 207 507 133 HOH HOH . 
J 6 HOH A 208 508 200 HOH HOH . 
J 6 HOH A 209 509 101 HOH HOH . 
J 6 HOH A 210 510 81 HOH HOH . 
J 6 HOH A 211 511 56 HOH HOH . 
J 6 HOH A 212 512 218 HOH HOH . 
J 6 HOH A 213 513 96 HOH HOH . 
J 6 HOH A 214 514 210 HOH HOH . 
J 6 HOH A 215 515 201 HOH HOH . 
J 6 HOH A 216 516 188 HOH HOH . 
J 6 HOH A 217 517 37 HOH HOH . 
J 6 HOH A 218 518 110 HOH HOH . 
J 6 HOH A 219 519 183 HOH HOH . 
J 6 HOH A 220 520 215 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 5.241 -0.599 -1.062 1 20 ? C1 EDO 205 A 1 
HETATM 2 O O1 EDO . . . F 4 6.415 -1.074 -0.396 1 20 ? O1 EDO 205 A 1 
HETATM 3 C C2 EDO . . . F 4 5.485 -0.361 -2.551 1 20 ? C2 EDO 205 A 1 
HETATM 4 O O2 EDO . . . F 4 6.616 0.487 -2.784 1 20 ? O2 EDO 205 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#