data_5SD6
#
_model_server_result.job_id            EovWQX3ozTvOXMXBb1_hHw 
_model_server_result.datetime_utc      '2024-11-22 13:13:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sd6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5SD6 
#
_exptl.entry_id    5SD6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5SD6 
_cell.length_a            74.19 
_cell.length_b            74.19 
_cell.length_c            143.21 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SD6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 303 n n 
PA O2A NAP sing 304 n n 
PA O5B NAP sing 305 n n 
PA O3 NAP sing 306 n n 
O2A HOA2 NAP sing 307 n n 
O5B C5B NAP sing 308 n n 
C5B C4B NAP sing 309 n n 
C5B H51A NAP sing 310 n n 
C5B H52A NAP sing 311 n n 
C4B O4B NAP sing 312 n n 
C4B C3B NAP sing 313 n n 
C4B H4B NAP sing 314 n n 
O4B C1B NAP sing 315 n n 
C3B O3B NAP sing 316 n n 
C3B C2B NAP sing 317 n n 
C3B H3B NAP sing 318 n n 
O3B HO3A NAP sing 319 n n 
C2B O2B NAP sing 320 n n 
C2B C1B NAP sing 321 n n 
C2B H2B NAP sing 322 n n 
O2B P2B NAP sing 323 n n 
C1B N9A NAP sing 324 n n 
C1B H1B NAP sing 325 n n 
N9A C8A NAP sing 326 n y 
N9A C4A NAP sing 327 n y 
C8A N7A NAP doub 328 n y 
C8A H8A NAP sing 329 n n 
N7A C5A NAP sing 330 n y 
C5A C6A NAP sing 331 n y 
C5A C4A NAP doub 332 n y 
C6A N6A NAP sing 333 n n 
C6A N1A NAP doub 334 n y 
N6A H61A NAP sing 335 n n 
N6A H62A NAP sing 336 n n 
N1A C2A NAP sing 337 n y 
C2A N3A NAP doub 338 n y 
C2A H2A NAP sing 339 n n 
N3A C4A NAP sing 340 n y 
O3 PN NAP sing 341 n n 
PN O1N NAP doub 342 n n 
PN O2N NAP sing 343 n n 
PN O5D NAP sing 344 n n 
O5D C5D NAP sing 345 n n 
C5D C4D NAP sing 346 n n 
C5D H51N NAP sing 347 n n 
C5D H52N NAP sing 348 n n 
C4D O4D NAP sing 349 n n 
C4D C3D NAP sing 350 n n 
C4D H4D NAP sing 351 n n 
O4D C1D NAP sing 352 n n 
C3D O3D NAP sing 353 n n 
C3D C2D NAP sing 354 n n 
C3D H3D NAP sing 355 n n 
O3D HO3N NAP sing 356 n n 
C2D O2D NAP sing 357 n n 
C2D C1D NAP sing 358 n n 
C2D H2D NAP sing 359 n n 
O2D HO2N NAP sing 360 n n 
C1D N1N NAP sing 361 n n 
C1D H1D NAP sing 362 n n 
N1N C2N NAP sing 363 n y 
N1N C6N NAP doub 364 n y 
C2N C3N NAP doub 365 n y 
C2N H2N NAP sing 366 n n 
C3N C7N NAP sing 367 n n 
C3N C4N NAP sing 368 n y 
C7N O7N NAP doub 369 n n 
C7N N7N NAP sing 370 n n 
N7N H71N NAP sing 371 n n 
N7N H72N NAP sing 372 n n 
C4N C5N NAP doub 373 n y 
C4N H4N NAP sing 374 n n 
C5N C6N NAP sing 375 n y 
C5N H5N NAP sing 376 n n 
C6N H6N NAP sing 377 n n 
P2B O1X NAP doub 378 n n 
P2B O2X NAP sing 379 n n 
P2B O3X NAP sing 380 n n 
O2X HOP2 NAP sing 381 n n 
O3X HOP3 NAP sing 382 n n 
#
_atom_sites.entry_id                     5SD6 
_atom_sites.fract_transf_matrix[1][1]    0.013479 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 201 190 NAP NAP . 
C 3 HXV A 1 202 191 HXV LIG . 
D 4 EDO A 1 203 192 EDO EDO . 
E 4 EDO A 1 204 193 EDO EDO . 
F 5 SO4 A 1 205 194 SO4 SO4 . 
G 5 SO4 A 1 206 195 SO4 SO4 . 
H 5 SO4 A 1 207 196 SO4 SO4 . 
I 6 CL A 1 208 197 CL CL . 
J 6 CL A 1 209 198 CL CL . 
K 6 CL A 1 210 199 CL CL . 
L 7 HOH A 1 301 90 HOH HOH . 
L 7 HOH A 2 302 106 HOH HOH . 
L 7 HOH A 3 303 115 HOH HOH . 
L 7 HOH A 4 304 97 HOH HOH . 
L 7 HOH A 5 305 119 HOH HOH . 
L 7 HOH A 6 306 43 HOH HOH . 
L 7 HOH A 7 307 93 HOH HOH . 
L 7 HOH A 8 308 49 HOH HOH . 
L 7 HOH A 9 309 42 HOH HOH . 
L 7 HOH A 10 310 35 HOH HOH . 
L 7 HOH A 11 311 14 HOH HOH . 
L 7 HOH A 12 312 16 HOH HOH . 
L 7 HOH A 13 313 36 HOH HOH . 
L 7 HOH A 14 314 44 HOH HOH . 
L 7 HOH A 15 315 84 HOH HOH . 
L 7 HOH A 16 316 3 HOH HOH . 
L 7 HOH A 17 317 24 HOH HOH . 
L 7 HOH A 18 318 50 HOH HOH . 
L 7 HOH A 19 319 15 HOH HOH . 
L 7 HOH A 20 320 13 HOH HOH . 
L 7 HOH A 21 321 17 HOH HOH . 
L 7 HOH A 22 322 7 HOH HOH . 
L 7 HOH A 23 323 5 HOH HOH . 
L 7 HOH A 24 324 40 HOH HOH . 
L 7 HOH A 25 325 72 HOH HOH . 
L 7 HOH A 26 326 22 HOH HOH . 
L 7 HOH A 27 327 81 HOH HOH . 
L 7 HOH A 28 328 123 HOH HOH . 
L 7 HOH A 29 329 121 HOH HOH . 
L 7 HOH A 30 330 27 HOH HOH . 
L 7 HOH A 31 331 67 HOH HOH . 
L 7 HOH A 32 332 8 HOH HOH . 
L 7 HOH A 33 333 60 HOH HOH . 
L 7 HOH A 34 334 86 HOH HOH . 
L 7 HOH A 35 335 12 HOH HOH . 
L 7 HOH A 36 336 18 HOH HOH . 
L 7 HOH A 37 337 65 HOH HOH . 
L 7 HOH A 38 338 103 HOH HOH . 
L 7 HOH A 39 339 95 HOH HOH . 
L 7 HOH A 40 340 19 HOH HOH . 
L 7 HOH A 41 341 23 HOH HOH . 
L 7 HOH A 42 342 32 HOH HOH . 
L 7 HOH A 43 343 21 HOH HOH . 
L 7 HOH A 44 344 110 HOH HOH . 
L 7 HOH A 45 345 1 HOH HOH . 
L 7 HOH A 46 346 25 HOH HOH . 
L 7 HOH A 47 347 52 HOH HOH . 
L 7 HOH A 48 348 33 HOH HOH . 
L 7 HOH A 49 349 53 HOH HOH . 
L 7 HOH A 50 350 78 HOH HOH . 
L 7 HOH A 51 351 2 HOH HOH . 
L 7 HOH A 52 352 105 HOH HOH . 
L 7 HOH A 53 353 45 HOH HOH . 
L 7 HOH A 54 354 37 HOH HOH . 
L 7 HOH A 55 355 38 HOH HOH . 
L 7 HOH A 56 356 71 HOH HOH . 
L 7 HOH A 57 357 114 HOH HOH . 
L 7 HOH A 58 358 31 HOH HOH . 
L 7 HOH A 59 359 11 HOH HOH . 
L 7 HOH A 60 360 99 HOH HOH . 
L 7 HOH A 61 361 113 HOH HOH . 
L 7 HOH A 62 362 70 HOH HOH . 
L 7 HOH A 63 363 100 HOH HOH . 
L 7 HOH A 64 364 20 HOH HOH . 
L 7 HOH A 65 365 41 HOH HOH . 
L 7 HOH A 66 366 98 HOH HOH . 
L 7 HOH A 67 367 79 HOH HOH . 
L 7 HOH A 68 368 112 HOH HOH . 
L 7 HOH A 69 369 10 HOH HOH . 
L 7 HOH A 70 370 58 HOH HOH . 
L 7 HOH A 71 371 57 HOH HOH . 
L 7 HOH A 72 372 63 HOH HOH . 
L 7 HOH A 73 373 91 HOH HOH . 
L 7 HOH A 74 374 26 HOH HOH . 
L 7 HOH A 75 375 30 HOH HOH . 
L 7 HOH A 76 376 48 HOH HOH . 
L 7 HOH A 77 377 124 HOH HOH . 
L 7 HOH A 78 378 117 HOH HOH . 
L 7 HOH A 79 379 128 HOH HOH . 
L 7 HOH A 80 380 54 HOH HOH . 
L 7 HOH A 81 381 9 HOH HOH . 
L 7 HOH A 82 382 66 HOH HOH . 
L 7 HOH A 83 383 51 HOH HOH . 
L 7 HOH A 84 384 131 HOH HOH . 
L 7 HOH A 85 385 28 HOH HOH . 
L 7 HOH A 86 386 92 HOH HOH . 
L 7 HOH A 87 387 89 HOH HOH . 
L 7 HOH A 88 388 85 HOH HOH . 
L 7 HOH A 89 389 125 HOH HOH . 
L 7 HOH A 90 390 82 HOH HOH . 
L 7 HOH A 91 391 47 HOH HOH . 
L 7 HOH A 92 392 127 HOH HOH . 
L 7 HOH A 93 393 102 HOH HOH . 
L 7 HOH A 94 394 55 HOH HOH . 
L 7 HOH A 95 395 61 HOH HOH . 
L 7 HOH A 96 396 75 HOH HOH . 
L 7 HOH A 97 397 64 HOH HOH . 
L 7 HOH A 98 398 39 HOH HOH . 
L 7 HOH A 99 399 132 HOH HOH . 
L 7 HOH A 100 400 126 HOH HOH . 
L 7 HOH A 101 401 88 HOH HOH . 
L 7 HOH A 102 402 120 HOH HOH . 
L 7 HOH A 103 403 73 HOH HOH . 
L 7 HOH A 104 404 34 HOH HOH . 
L 7 HOH A 105 405 130 HOH HOH . 
L 7 HOH A 106 406 118 HOH HOH . 
L 7 HOH A 107 407 108 HOH HOH . 
L 7 HOH A 108 408 129 HOH HOH . 
L 7 HOH A 109 409 46 HOH HOH . 
L 7 HOH A 110 410 80 HOH HOH . 
L 7 HOH A 111 411 122 HOH HOH . 
L 7 HOH A 112 412 83 HOH HOH . 
L 7 HOH A 113 413 111 HOH HOH . 
L 7 HOH A 114 414 69 HOH HOH . 
L 7 HOH A 115 415 59 HOH HOH . 
L 7 HOH A 116 416 135 HOH HOH . 
L 7 HOH A 117 417 29 HOH HOH . 
L 7 HOH A 118 418 74 HOH HOH . 
L 7 HOH A 119 419 96 HOH HOH . 
L 7 HOH A 120 420 134 HOH HOH . 
L 7 HOH A 121 421 101 HOH HOH . 
L 7 HOH A 122 422 56 HOH HOH . 
L 7 HOH A 123 423 62 HOH HOH . 
L 7 HOH A 124 424 107 HOH HOH . 
L 7 HOH A 125 425 77 HOH HOH . 
L 7 HOH A 126 426 133 HOH HOH . 
L 7 HOH A 127 427 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 -32.172 4.862 -15.897 1 31.29 ? PA NAP 201 A 1 
HETATM 2 O O1A NAP . . . B 2 -31.191 5.579 -15.035 1 24.26 ? O1A NAP 201 A 1 
HETATM 3 O O2A NAP . . . B 2 -31.687 4.627 -17.285 1 33.18 ? O2A NAP 201 A 1 
HETATM 4 O O5B NAP . . . B 2 -32.59 3.418 -15.243 1 31.35 ? O5B NAP 201 A 1 
HETATM 5 C C5B NAP . . . B 2 -32.972 3.461 -13.901 1 24.67 ? C5B NAP 201 A 1 
HETATM 6 C C4B NAP . . . B 2 -32.692 2.062 -13.329 1 32.15 ? C4B NAP 201 A 1 
HETATM 7 O O4B NAP . . . B 2 -31.493 1.641 -13.662 1 32.81 ? O4B NAP 201 A 1 
HETATM 8 C C3B NAP . . . B 2 -32.736 2.072 -11.791 1 37.35 ? C3B NAP 201 A 1 
HETATM 9 O O3B NAP . . . B 2 -34.029 1.755 -11.434 1 35.27 ? O3B NAP 201 A 1 
HETATM 10 C C2B NAP . . . B 2 -31.72 0.97 -11.472 1 36.22 ? C2B NAP 201 A 1 
HETATM 11 O O2B NAP . . . B 2 -32.311 -0.309 -11.924 1 31.45 ? O2B NAP 201 A 1 
HETATM 12 C C1B NAP . . . B 2 -30.744 1.179 -12.327 1 36.69 ? C1B NAP 201 A 1 
HETATM 13 N N9A NAP . . . B 2 -29.805 2.247 -12.015 1 33.18 ? N9A NAP 201 A 1 
HETATM 14 C C8A NAP . . . B 2 -29.75 3.53 -12.364 1 32.73 ? C8A NAP 201 A 1 
HETATM 15 N N7A NAP . . . B 2 -28.65 4.068 -11.81 1 30.64 ? N7A NAP 201 A 1 
HETATM 16 C C5A NAP . . . B 2 -28.019 3.101 -11.12 1 30.64 ? C5A NAP 201 A 1 
HETATM 17 C C6A NAP . . . B 2 -26.841 3.107 -10.371 1 31.18 ? C6A NAP 201 A 1 
HETATM 18 N N6A NAP . . . B 2 -25.954 4.215 -10.119 1 24.2 ? N6A NAP 201 A 1 
HETATM 19 N N1A NAP . . . B 2 -26.426 1.995 -9.789 1 28.78 ? N1A NAP 201 A 1 
HETATM 20 C C2A NAP . . . B 2 -27.158 0.845 -9.908 1 29.6 ? C2A NAP 201 A 1 
HETATM 21 N N3A NAP . . . B 2 -28.297 0.835 -10.636 1 32.49 ? N3A NAP 201 A 1 
HETATM 22 C C4A NAP . . . B 2 -28.722 1.976 -11.246 1 33.16 ? C4A NAP 201 A 1 
HETATM 23 O O3 NAP . . . B 2 -33.633 5.626 -15.838 1 34.97 ? O3 NAP 201 A 1 
HETATM 24 P PN NAP . . . B 2 -33.92 7.245 -16.215 1 29.67 ? PN NAP 201 A 1 
HETATM 25 O O1N NAP . . . B 2 -33.158 8.19 -15.296 1 29.73 ? O1N NAP 201 A 1 
HETATM 26 O O2N NAP . . . B 2 -35.418 7.429 -16.089 1 38.04 ? O2N NAP 201 A 1 
HETATM 27 O O5D NAP . . . B 2 -33.407 7.439 -17.792 1 33.95 ? O5D NAP 201 A 1 
HETATM 28 C C5D NAP . . . B 2 -34.25 7.005 -18.852 1 30.87 ? C5D NAP 201 A 1 
HETATM 29 C C4D NAP . . . B 2 -35.024 8.241 -19.352 1 35.58 ? C4D NAP 201 A 1 
HETATM 30 O O4D NAP . . . B 2 -34.212 9.255 -19.602 1 31.23 ? O4D NAP 201 A 1 
HETATM 31 C C3D NAP . . . B 2 -35.676 7.941 -20.698 1 44.34 ? C3D NAP 201 A 1 
HETATM 32 O O3D NAP . . . B 2 -36.724 8.782 -20.863 1 37.48 ? O3D NAP 201 A 1 
HETATM 33 C C2D NAP . . . B 2 -34.529 8.255 -21.685 1 36.62 ? C2D NAP 201 A 1 
HETATM 34 O O2D NAP . . . B 2 -35.139 8.49 -23.023 1 31.78 ? O2D NAP 201 A 1 
HETATM 35 C C1D NAP . . . B 2 -33.987 9.35 -21.203 1 29.08 ? C1D NAP 201 A 1 
HETATM 36 N N1N NAP . . . B 2 -32.555 9.487 -21.386 1 34.76 ? N1N NAP 201 A 1 
HETATM 37 C C2N NAP . . . B 2 -32.045 10.676 -21.844 1 26.55 ? C2N NAP 201 A 1 
HETATM 38 C C3N NAP . . . B 2 -30.674 10.871 -21.995 1 32.61 ? C3N NAP 201 A 1 
HETATM 39 C C7N NAP . . . B 2 -30.179 12.208 -22.508 1 33.1 ? C7N NAP 201 A 1 
HETATM 40 O O7N NAP . . . B 2 -29.025 12.426 -22.639 1 28.13 ? O7N NAP 201 A 1 
HETATM 41 N N7N NAP . . . B 2 -31.132 13.232 -22.806 1 25.08 ? N7N NAP 201 A 1 
HETATM 42 C C4N NAP . . . B 2 -29.804 9.845 -21.661 1 24.78 ? C4N NAP 201 A 1 
HETATM 43 C C5N NAP . . . B 2 -30.301 8.65 -21.198 1 24.4 ? C5N NAP 201 A 1 
HETATM 44 C C6N NAP . . . B 2 -31.69 8.475 -21.048 1 32.44 ? C6N NAP 201 A 1 
HETATM 45 P P2B NAP . . . B 2 -32.944 -1.36 -10.812 1 34.67 ? P2B NAP 201 A 1 
HETATM 46 O O1X NAP . . . B 2 -31.909 -1.589 -9.76 1 28.47 ? O1X NAP 201 A 1 
HETATM 47 O O2X NAP . . . B 2 -34.191 -0.711 -10.219 1 37.15 ? O2X NAP 201 A 1 
HETATM 48 O O3X NAP . . . B 2 -33.318 -2.66 -11.542 1 32.32 ? O3X NAP 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#