data_5SD8 # _model_server_result.job_id meJGvoOcbCpTOoe8Fl98Xg _model_server_result.datetime_utc '2024-11-25 19:48:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SD8 # _exptl.entry_id 5SD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD8 _cell.length_a 73.85 _cell.length_b 73.85 _cell.length_c 143.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 345 n n PA O2A NAP sing 346 n n PA O5B NAP sing 347 n n PA O3 NAP sing 348 n n O2A HOA2 NAP sing 349 n n O5B C5B NAP sing 350 n n C5B C4B NAP sing 351 n n C5B H51A NAP sing 352 n n C5B H52A NAP sing 353 n n C4B O4B NAP sing 354 n n C4B C3B NAP sing 355 n n C4B H4B NAP sing 356 n n O4B C1B NAP sing 357 n n C3B O3B NAP sing 358 n n C3B C2B NAP sing 359 n n C3B H3B NAP sing 360 n n O3B HO3A NAP sing 361 n n C2B O2B NAP sing 362 n n C2B C1B NAP sing 363 n n C2B H2B NAP sing 364 n n O2B P2B NAP sing 365 n n C1B N9A NAP sing 366 n n C1B H1B NAP sing 367 n n N9A C8A NAP sing 368 n y N9A C4A NAP sing 369 n y C8A N7A NAP doub 370 n y C8A H8A NAP sing 371 n n N7A C5A NAP sing 372 n y C5A C6A NAP sing 373 n y C5A C4A NAP doub 374 n y C6A N6A NAP sing 375 n n C6A N1A NAP doub 376 n y N6A H61A NAP sing 377 n n N6A H62A NAP sing 378 n n N1A C2A NAP sing 379 n y C2A N3A NAP doub 380 n y C2A H2A NAP sing 381 n n N3A C4A NAP sing 382 n y O3 PN NAP sing 383 n n PN O1N NAP doub 384 n n PN O2N NAP sing 385 n n PN O5D NAP sing 386 n n O5D C5D NAP sing 387 n n C5D C4D NAP sing 388 n n C5D H51N NAP sing 389 n n C5D H52N NAP sing 390 n n C4D O4D NAP sing 391 n n C4D C3D NAP sing 392 n n C4D H4D NAP sing 393 n n O4D C1D NAP sing 394 n n C3D O3D NAP sing 395 n n C3D C2D NAP sing 396 n n C3D H3D NAP sing 397 n n O3D HO3N NAP sing 398 n n C2D O2D NAP sing 399 n n C2D C1D NAP sing 400 n n C2D H2D NAP sing 401 n n O2D HO2N NAP sing 402 n n C1D N1N NAP sing 403 n n C1D H1D NAP sing 404 n n N1N C2N NAP sing 405 n y N1N C6N NAP doub 406 n y C2N C3N NAP doub 407 n y C2N H2N NAP sing 408 n n C3N C7N NAP sing 409 n n C3N C4N NAP sing 410 n y C7N O7N NAP doub 411 n n C7N N7N NAP sing 412 n n N7N H71N NAP sing 413 n n N7N H72N NAP sing 414 n n C4N C5N NAP doub 415 n y C4N H4N NAP sing 416 n n C5N C6N NAP sing 417 n y C5N H5N NAP sing 418 n n C6N H6N NAP sing 419 n n P2B O1X NAP doub 420 n n P2B O2X NAP sing 421 n n P2B O3X NAP sing 422 n n O2X HOP2 NAP sing 423 n n O3X HOP3 NAP sing 424 n n # _atom_sites.entry_id 5SD8 _atom_sites.fract_transf_matrix[1][1] 0.013541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 HJI A 1 202 202 HJI HZ9 . D 4 I6J A 1 203 206 I6J LIG . E 5 SO4 A 1 204 203 SO4 SO4 . F 5 SO4 A 1 205 204 SO4 SO4 . G 6 CL A 1 206 205 CL CL . H 7 HOH A 1 301 301 HOH HOH . H 7 HOH A 2 302 302 HOH HOH . H 7 HOH A 3 303 303 HOH HOH . H 7 HOH A 4 304 304 HOH HOH . H 7 HOH A 5 305 305 HOH HOH . H 7 HOH A 6 306 306 HOH HOH . H 7 HOH A 7 307 307 HOH HOH . H 7 HOH A 8 308 308 HOH HOH . H 7 HOH A 9 309 309 HOH HOH . H 7 HOH A 10 310 310 HOH HOH . H 7 HOH A 11 311 311 HOH HOH . H 7 HOH A 12 312 312 HOH HOH . H 7 HOH A 13 313 313 HOH HOH . H 7 HOH A 14 314 314 HOH HOH . H 7 HOH A 15 315 315 HOH HOH . H 7 HOH A 16 316 316 HOH HOH . H 7 HOH A 17 317 317 HOH HOH . H 7 HOH A 18 318 318 HOH HOH . H 7 HOH A 19 319 319 HOH HOH . H 7 HOH A 20 320 320 HOH HOH . H 7 HOH A 21 321 321 HOH HOH . H 7 HOH A 22 322 322 HOH HOH . H 7 HOH A 23 323 323 HOH HOH . H 7 HOH A 24 324 324 HOH HOH . H 7 HOH A 25 325 325 HOH HOH . H 7 HOH A 26 326 326 HOH HOH . H 7 HOH A 27 327 327 HOH HOH . H 7 HOH A 28 328 328 HOH HOH . H 7 HOH A 29 329 329 HOH HOH . H 7 HOH A 30 330 330 HOH HOH . H 7 HOH A 31 331 331 HOH HOH . H 7 HOH A 32 332 332 HOH HOH . H 7 HOH A 33 333 333 HOH HOH . H 7 HOH A 34 334 334 HOH HOH . H 7 HOH A 35 335 335 HOH HOH . H 7 HOH A 36 336 336 HOH HOH . H 7 HOH A 37 337 337 HOH HOH . H 7 HOH A 38 338 338 HOH HOH . H 7 HOH A 39 339 339 HOH HOH . H 7 HOH A 40 340 340 HOH HOH . H 7 HOH A 41 341 341 HOH HOH . H 7 HOH A 42 342 342 HOH HOH . H 7 HOH A 43 343 343 HOH HOH . H 7 HOH A 44 344 344 HOH HOH . H 7 HOH A 45 345 345 HOH HOH . H 7 HOH A 46 346 346 HOH HOH . H 7 HOH A 47 347 347 HOH HOH . H 7 HOH A 48 348 348 HOH HOH . H 7 HOH A 49 349 349 HOH HOH . H 7 HOH A 50 350 350 HOH HOH . H 7 HOH A 51 351 351 HOH HOH . H 7 HOH A 52 352 352 HOH HOH . H 7 HOH A 53 353 353 HOH HOH . H 7 HOH A 54 354 354 HOH HOH . H 7 HOH A 55 355 355 HOH HOH . H 7 HOH A 56 356 356 HOH HOH . H 7 HOH A 57 357 357 HOH HOH . H 7 HOH A 58 358 358 HOH HOH . H 7 HOH A 59 359 359 HOH HOH . H 7 HOH A 60 360 360 HOH HOH . H 7 HOH A 61 361 361 HOH HOH . H 7 HOH A 62 362 362 HOH HOH . H 7 HOH A 63 363 363 HOH HOH . H 7 HOH A 64 364 364 HOH HOH . H 7 HOH A 65 365 365 HOH HOH . H 7 HOH A 66 366 366 HOH HOH . H 7 HOH A 67 367 367 HOH HOH . H 7 HOH A 68 368 368 HOH HOH . H 7 HOH A 69 369 369 HOH HOH . H 7 HOH A 70 370 370 HOH HOH . H 7 HOH A 71 371 371 HOH HOH . H 7 HOH A 72 372 372 HOH HOH . H 7 HOH A 73 373 373 HOH HOH . H 7 HOH A 74 374 374 HOH HOH . H 7 HOH A 75 375 375 HOH HOH . H 7 HOH A 76 376 376 HOH HOH . H 7 HOH A 77 377 377 HOH HOH . H 7 HOH A 78 378 378 HOH HOH . H 7 HOH A 79 379 379 HOH HOH . H 7 HOH A 80 380 380 HOH HOH . H 7 HOH A 81 381 381 HOH HOH . H 7 HOH A 82 382 382 HOH HOH . H 7 HOH A 83 383 383 HOH HOH . H 7 HOH A 84 384 384 HOH HOH . H 7 HOH A 85 385 385 HOH HOH . H 7 HOH A 86 386 386 HOH HOH . H 7 HOH A 87 387 387 HOH HOH . H 7 HOH A 88 388 388 HOH HOH . H 7 HOH A 89 389 389 HOH HOH . H 7 HOH A 90 390 390 HOH HOH . H 7 HOH A 91 391 391 HOH HOH . H 7 HOH A 92 392 392 HOH HOH . H 7 HOH A 93 393 393 HOH HOH . H 7 HOH A 94 394 394 HOH HOH . H 7 HOH A 95 395 395 HOH HOH . H 7 HOH A 96 396 396 HOH HOH . H 7 HOH A 97 397 397 HOH HOH . H 7 HOH A 98 398 398 HOH HOH . H 7 HOH A 99 399 399 HOH HOH . H 7 HOH A 100 400 400 HOH HOH . H 7 HOH A 101 401 401 HOH HOH . H 7 HOH A 102 402 402 HOH HOH . H 7 HOH A 103 403 403 HOH HOH . H 7 HOH A 104 404 404 HOH HOH . H 7 HOH A 105 405 405 HOH HOH . H 7 HOH A 106 406 406 HOH HOH . H 7 HOH A 107 407 407 HOH HOH . H 7 HOH A 108 408 408 HOH HOH . H 7 HOH A 109 409 409 HOH HOH . H 7 HOH A 110 410 410 HOH HOH . H 7 HOH A 111 411 411 HOH HOH . H 7 HOH A 112 412 412 HOH HOH . H 7 HOH A 113 413 413 HOH HOH . H 7 HOH A 114 414 414 HOH HOH . H 7 HOH A 115 415 415 HOH HOH . H 7 HOH A 116 416 416 HOH HOH . H 7 HOH A 117 417 417 HOH HOH . H 7 HOH A 118 418 418 HOH HOH . H 7 HOH A 119 419 419 HOH HOH . H 7 HOH A 120 420 420 HOH HOH . H 7 HOH A 121 421 421 HOH HOH . H 7 HOH A 122 422 422 HOH HOH . H 7 HOH A 123 423 423 HOH HOH . H 7 HOH A 124 424 424 HOH HOH . H 7 HOH A 125 425 425 HOH HOH . H 7 HOH A 126 426 426 HOH HOH . H 7 HOH A 127 427 427 HOH HOH . H 7 HOH A 128 428 428 HOH HOH . H 7 HOH A 129 429 429 HOH HOH . H 7 HOH A 130 430 430 HOH HOH . H 7 HOH A 131 431 431 HOH HOH . H 7 HOH A 132 432 432 HOH HOH . H 7 HOH A 133 433 433 HOH HOH . H 7 HOH A 134 434 434 HOH HOH . H 7 HOH A 135 435 435 HOH HOH . H 7 HOH A 136 436 436 HOH HOH . H 7 HOH A 137 437 437 HOH HOH . H 7 HOH A 138 438 438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -31.865 5.658 -15.31 1 29.97 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 -30.834 6.3 -14.484 1 25.92 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 -31.443 5.368 -16.744 1 27.06 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 -32.352 4.25 -14.707 1 32.96 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 -32.674 4.27 -13.3 1 33.01 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 -32.529 2.883 -12.73 1 33.01 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 -31.221 2.366 -13.056 1 36.3 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 -32.635 2.823 -11.205 1 37.87 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 -34 2.598 -10.871 1 36.23 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 -31.735 1.634 -10.882 1 34.78 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 -32.449 0.427 -11.212 1 38.49 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 -30.616 1.816 -11.901 1 39.59 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 -29.56 2.72 -11.474 1 38.63 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 -29.399 4.033 -11.836 1 39.13 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 -28.311 4.588 -11.366 1 44.16 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 -27.706 3.57 -10.647 1 36.26 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 -26.491 3.501 -9.942 1 42.1 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 -25.646 4.531 -9.814 1 45.28 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 -26.165 2.323 -9.367 1 42.1 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 -27.008 1.292 -9.488 1 40.29 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 -28.18 1.237 -10.127 1 38.52 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 -28.469 2.415 -10.694 1 36.48 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 -33.21 6.506 -15.251 1 32.02 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 -33.654 8.016 -15.533 1 32.46 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 -32.834 8.925 -14.703 1 29.37 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 -35.129 8.085 -15.468 1 38.28 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 -33.222 8.209 -17.054 1 28.67 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 -34.049 7.703 -18.125 1 29.46 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 -34.831 8.839 -18.751 1 31.6 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 -33.924 9.88 -19.186 1 29.08 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 -35.625 8.475 -19.999 1 31.58 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 -36.682 9.404 -20.199 1 35.49 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 -34.585 8.665 -21.098 1 28.57 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -35.201 8.918 -22.357 1 27.29 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 -33.873 9.917 -20.592 1 24.46 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -32.387 10.035 -21.019 1 30.49 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -32.007 11.195 -21.579 1 23.31 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -30.666 11.46 -21.785 1 25.97 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -30.209 12.788 -22.325 1 26.84 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -28.987 13.007 -22.452 1 23.42 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -31.144 13.708 -22.61 1 23.57 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -29.733 10.489 -21.431 1 25.6 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -30.155 9.287 -20.895 1 30.11 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 -31.502 9.071 -20.696 1 30.06 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 -32.759 -0.764 -10.15 1 38.16 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 -33.065 -1.981 -10.962 1 34.45 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 -31.499 -0.862 -9.286 1 32.53 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 -33.964 -0.229 -9.355 1 46.48 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #