data_5SD8 # _model_server_result.job_id 8E-2lZQyKb4SagXGg9U7rQ _model_server_result.datetime_utc '2025-02-18 07:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5SD8 # _exptl.entry_id 5SD8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD8 _cell.length_a 73.85 _cell.length_b 73.85 _cell.length_c 143.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 F2 N4 O4' _chem_comp.formula_weight 410.415 _chem_comp.id HJI _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F26 C24 HJI sing 150 n n C13 C12 HJI sing 151 n n C13 C14 HJI sing 152 n n C12 O11 HJI sing 153 n n C24 F25 HJI sing 154 n n C24 C23 HJI sing 155 n n C22 C23 HJI sing 156 n n C22 C21 HJI sing 157 n n N09 C08 HJI sing 158 n n C14 O15 HJI sing 159 n n O15 C16 HJI sing 160 n n C23 C27 HJI sing 161 n n C21 C16 HJI doub 162 n y C21 C20 HJI sing 163 n y C16 C17 HJI sing 164 n y O11 C10 HJI sing 165 n n C08 C10 HJI doub 166 n y C08 N07 HJI sing 167 n y O29 C27 HJI doub 168 n n C20 C19 HJI doub 169 n y C10 C03 HJI sing 170 n y N07 C05 HJI doub 171 n y C17 C18 HJI doub 172 n y C27 O28 HJI sing 173 n n C19 C18 HJI sing 174 n y C03 N04 HJI doub 175 n y C03 C02 HJI sing 176 n n C05 N04 HJI sing 177 n y C05 N06 HJI sing 178 n n C01 C02 HJI sing 179 n n C13 H1 HJI sing 180 n n C13 H2 HJI sing 181 n n C17 H3 HJI sing 182 n n C20 H4 HJI sing 183 n n C22 H5 HJI sing 184 n n C22 H6 HJI sing 185 n n C24 H7 HJI sing 186 n n C01 H8 HJI sing 187 n n C01 H9 HJI sing 188 n n C01 H10 HJI sing 189 n n C02 H11 HJI sing 190 n n C02 H12 HJI sing 191 n n C12 H13 HJI sing 192 n n C12 H14 HJI sing 193 n n C14 H15 HJI sing 194 n n C14 H16 HJI sing 195 n n C18 H17 HJI sing 196 n n C19 H18 HJI sing 197 n n C23 H19 HJI sing 198 n n N06 H20 HJI sing 199 n n N06 H21 HJI sing 200 n n N09 H22 HJI sing 201 n n N09 H23 HJI sing 202 n n O28 H24 HJI sing 203 n n # _atom_sites.entry_id 5SD8 _atom_sites.fract_transf_matrix[1][1] 0.013541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 HJI A 1 202 202 HJI HZ9 . D 4 I6J A 1 203 206 I6J LIG . E 5 SO4 A 1 204 203 SO4 SO4 . F 5 SO4 A 1 205 204 SO4 SO4 . G 6 CL A 1 206 205 CL CL . H 7 HOH A 1 301 301 HOH HOH . H 7 HOH A 2 302 302 HOH HOH . H 7 HOH A 3 303 303 HOH HOH . H 7 HOH A 4 304 304 HOH HOH . H 7 HOH A 5 305 305 HOH HOH . H 7 HOH A 6 306 306 HOH HOH . H 7 HOH A 7 307 307 HOH HOH . H 7 HOH A 8 308 308 HOH HOH . H 7 HOH A 9 309 309 HOH HOH . H 7 HOH A 10 310 310 HOH HOH . H 7 HOH A 11 311 311 HOH HOH . H 7 HOH A 12 312 312 HOH HOH . H 7 HOH A 13 313 313 HOH HOH . H 7 HOH A 14 314 314 HOH HOH . H 7 HOH A 15 315 315 HOH HOH . H 7 HOH A 16 316 316 HOH HOH . H 7 HOH A 17 317 317 HOH HOH . H 7 HOH A 18 318 318 HOH HOH . H 7 HOH A 19 319 319 HOH HOH . H 7 HOH A 20 320 320 HOH HOH . H 7 HOH A 21 321 321 HOH HOH . H 7 HOH A 22 322 322 HOH HOH . H 7 HOH A 23 323 323 HOH HOH . H 7 HOH A 24 324 324 HOH HOH . H 7 HOH A 25 325 325 HOH HOH . H 7 HOH A 26 326 326 HOH HOH . H 7 HOH A 27 327 327 HOH HOH . H 7 HOH A 28 328 328 HOH HOH . H 7 HOH A 29 329 329 HOH HOH . H 7 HOH A 30 330 330 HOH HOH . H 7 HOH A 31 331 331 HOH HOH . H 7 HOH A 32 332 332 HOH HOH . H 7 HOH A 33 333 333 HOH HOH . H 7 HOH A 34 334 334 HOH HOH . H 7 HOH A 35 335 335 HOH HOH . H 7 HOH A 36 336 336 HOH HOH . H 7 HOH A 37 337 337 HOH HOH . H 7 HOH A 38 338 338 HOH HOH . H 7 HOH A 39 339 339 HOH HOH . H 7 HOH A 40 340 340 HOH HOH . H 7 HOH A 41 341 341 HOH HOH . H 7 HOH A 42 342 342 HOH HOH . H 7 HOH A 43 343 343 HOH HOH . H 7 HOH A 44 344 344 HOH HOH . H 7 HOH A 45 345 345 HOH HOH . H 7 HOH A 46 346 346 HOH HOH . H 7 HOH A 47 347 347 HOH HOH . H 7 HOH A 48 348 348 HOH HOH . H 7 HOH A 49 349 349 HOH HOH . H 7 HOH A 50 350 350 HOH HOH . H 7 HOH A 51 351 351 HOH HOH . H 7 HOH A 52 352 352 HOH HOH . H 7 HOH A 53 353 353 HOH HOH . H 7 HOH A 54 354 354 HOH HOH . H 7 HOH A 55 355 355 HOH HOH . H 7 HOH A 56 356 356 HOH HOH . H 7 HOH A 57 357 357 HOH HOH . H 7 HOH A 58 358 358 HOH HOH . H 7 HOH A 59 359 359 HOH HOH . H 7 HOH A 60 360 360 HOH HOH . H 7 HOH A 61 361 361 HOH HOH . H 7 HOH A 62 362 362 HOH HOH . H 7 HOH A 63 363 363 HOH HOH . H 7 HOH A 64 364 364 HOH HOH . H 7 HOH A 65 365 365 HOH HOH . H 7 HOH A 66 366 366 HOH HOH . H 7 HOH A 67 367 367 HOH HOH . H 7 HOH A 68 368 368 HOH HOH . H 7 HOH A 69 369 369 HOH HOH . H 7 HOH A 70 370 370 HOH HOH . H 7 HOH A 71 371 371 HOH HOH . H 7 HOH A 72 372 372 HOH HOH . H 7 HOH A 73 373 373 HOH HOH . H 7 HOH A 74 374 374 HOH HOH . H 7 HOH A 75 375 375 HOH HOH . H 7 HOH A 76 376 376 HOH HOH . H 7 HOH A 77 377 377 HOH HOH . H 7 HOH A 78 378 378 HOH HOH . H 7 HOH A 79 379 379 HOH HOH . H 7 HOH A 80 380 380 HOH HOH . H 7 HOH A 81 381 381 HOH HOH . H 7 HOH A 82 382 382 HOH HOH . H 7 HOH A 83 383 383 HOH HOH . H 7 HOH A 84 384 384 HOH HOH . H 7 HOH A 85 385 385 HOH HOH . H 7 HOH A 86 386 386 HOH HOH . H 7 HOH A 87 387 387 HOH HOH . H 7 HOH A 88 388 388 HOH HOH . H 7 HOH A 89 389 389 HOH HOH . H 7 HOH A 90 390 390 HOH HOH . H 7 HOH A 91 391 391 HOH HOH . H 7 HOH A 92 392 392 HOH HOH . H 7 HOH A 93 393 393 HOH HOH . H 7 HOH A 94 394 394 HOH HOH . H 7 HOH A 95 395 395 HOH HOH . H 7 HOH A 96 396 396 HOH HOH . H 7 HOH A 97 397 397 HOH HOH . H 7 HOH A 98 398 398 HOH HOH . H 7 HOH A 99 399 399 HOH HOH . H 7 HOH A 100 400 400 HOH HOH . H 7 HOH A 101 401 401 HOH HOH . H 7 HOH A 102 402 402 HOH HOH . H 7 HOH A 103 403 403 HOH HOH . H 7 HOH A 104 404 404 HOH HOH . H 7 HOH A 105 405 405 HOH HOH . H 7 HOH A 106 406 406 HOH HOH . H 7 HOH A 107 407 407 HOH HOH . H 7 HOH A 108 408 408 HOH HOH . H 7 HOH A 109 409 409 HOH HOH . H 7 HOH A 110 410 410 HOH HOH . H 7 HOH A 111 411 411 HOH HOH . H 7 HOH A 112 412 412 HOH HOH . H 7 HOH A 113 413 413 HOH HOH . H 7 HOH A 114 414 414 HOH HOH . H 7 HOH A 115 415 415 HOH HOH . H 7 HOH A 116 416 416 HOH HOH . H 7 HOH A 117 417 417 HOH HOH . H 7 HOH A 118 418 418 HOH HOH . H 7 HOH A 119 419 419 HOH HOH . H 7 HOH A 120 420 420 HOH HOH . H 7 HOH A 121 421 421 HOH HOH . H 7 HOH A 122 422 422 HOH HOH . H 7 HOH A 123 423 423 HOH HOH . H 7 HOH A 124 424 424 HOH HOH . H 7 HOH A 125 425 425 HOH HOH . H 7 HOH A 126 426 426 HOH HOH . H 7 HOH A 127 427 427 HOH HOH . H 7 HOH A 128 428 428 HOH HOH . H 7 HOH A 129 429 429 HOH HOH . H 7 HOH A 130 430 430 HOH HOH . H 7 HOH A 131 431 431 HOH HOH . H 7 HOH A 132 432 432 HOH HOH . H 7 HOH A 133 433 433 HOH HOH . H 7 HOH A 134 434 434 HOH HOH . H 7 HOH A 135 435 435 HOH HOH . H 7 HOH A 136 436 436 HOH HOH . H 7 HOH A 137 437 437 HOH HOH . H 7 HOH A 138 438 438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 HJI . A . C 3 -28.08 11.204 -25.021 0.05 23.04 ? C10 HJI 202 A 1 HETATM 2 C C13 HJI . A . C 3 -29.132 7.721 -24.512 0.05 36.59 ? C13 HJI 202 A 1 HETATM 3 C C17 HJI . A . C 3 -33.519 8.052 -24.887 0.05 49.97 ? C17 HJI 202 A 1 HETATM 4 C C20 HJI . A . C 3 -34.196 8.362 -27.549 0.05 50.67 ? C20 HJI 202 A 1 HETATM 5 C C21 HJI . A . C 3 -32.872 8.135 -27.21 0.05 52.83 ? C21 HJI 202 A 1 HETATM 6 C C22 HJI . A . C 3 -31.807 8.036 -28.273 0.05 56.99 ? C22 HJI 202 A 1 HETATM 7 C C24 HJI . A . C 3 -32.074 6.143 -29.878 0.05 61.67 ? C24 HJI 202 A 1 HETATM 8 C C01 HJI . A . C 3 -29.3 11.642 -28.355 0.05 23.22 ? C01 HJI 202 A 1 HETATM 9 C C02 HJI . A . C 3 -29.651 11.859 -26.867 0.05 22.49 ? C02 HJI 202 A 1 HETATM 10 C C03 HJI . A . C 3 -28.403 12.052 -26.042 0.05 22.12 ? C03 HJI 202 A 1 HETATM 11 C C05 HJI . A . C 3 -26.512 13.279 -25.621 0.05 22.64 ? C05 HJI 202 A 1 HETATM 12 C C08 HJI . A . C 3 -26.898 11.465 -24.308 0.05 22.7 ? C08 HJI 202 A 1 HETATM 13 C C12 HJI . A . C 3 -28.443 8.844 -25.271 0.05 30.18 ? C12 HJI 202 A 1 HETATM 14 C C14 HJI . A . C 3 -30.615 8.027 -24.308 0.05 42.77 ? C14 HJI 202 A 1 HETATM 15 C C16 HJI . A . C 3 -32.547 7.973 -25.865 0.05 50.97 ? C16 HJI 202 A 1 HETATM 16 C C18 HJI . A . C 3 -34.836 8.284 -25.25 0.05 49.4 ? C18 HJI 202 A 1 HETATM 17 C C19 HJI . A . C 3 -35.18 8.441 -26.579 0.05 49.62 ? C19 HJI 202 A 1 HETATM 18 C C23 HJI . A . C 3 -31.507 6.555 -28.56 0.05 59.79 ? C23 HJI 202 A 1 HETATM 19 C C27 HJI . A . C 3 -29.95 6.295 -28.405 0.05 61.48 ? C27 HJI 202 A 1 HETATM 20 F F25 HJI . A . C 3 -31.26 5.207 -30.502 0.05 60.84 ? F25 HJI 202 A 1 HETATM 21 F F26 HJI . A . C 3 -32.246 7.204 -30.739 0.05 62.7 ? F26 HJI 202 A 1 HETATM 22 N N04 HJI . A . C 3 -27.61 13.096 -26.341 0.05 22.42 ? N04 HJI 202 A 1 HETATM 23 N N06 HJI . A . C 3 -25.716 14.327 -25.926 0.05 21.71 ? N06 HJI 202 A 1 HETATM 24 N N07 HJI . A . C 3 -26.123 12.496 -24.608 0.05 22.71 ? N07 HJI 202 A 1 HETATM 25 N N09 HJI . A . C 3 -26.537 10.657 -23.291 0.05 22.02 ? N09 HJI 202 A 1 HETATM 26 O O11 HJI . A . C 3 -28.85 10.105 -24.654 0.05 25.42 ? O11 HJI 202 A 1 HETATM 27 O O15 HJI . A . C 3 -31.21 7.742 -25.588 0.05 47.93 ? O15 HJI 202 A 1 HETATM 28 O O28 HJI . A . C 3 -29.427 6.72 -27.366 0.05 62.05 ? O28 HJI 202 A 1 HETATM 29 O O29 HJI . A . C 3 -29.46 5.68 -29.376 0.05 61.38 ? O29 HJI 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #