data_5SD9 # _model_server_result.job_id E4q6Y1Lzl4C6cKsMzrLouA _model_server_result.datetime_utc '2024-10-10 12:14:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5SD9 # _exptl.entry_id 5SD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3-fluoropropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SD9 _cell.length_a 74.35 _cell.length_b 74.35 _cell.length_c 144.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H25 F N4 O4' _chem_comp.formula_weight 392.425 _chem_comp.id HZU _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3-fluoropropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 HZU sing 161 n n C03 C02 HZU sing 162 n n N04 C03 HZU doub 163 n y C05 N04 HZU sing 164 n y N06 C05 HZU sing 165 n n N07 C05 HZU doub 166 n y C08 N07 HZU sing 167 n y N09 C08 HZU sing 168 n n C10 C08 HZU doub 169 n y O11 C10 HZU sing 170 n n C12 O11 HZU sing 171 n n C13 C12 HZU sing 172 n n C14 C13 HZU sing 173 n n O15 C14 HZU sing 174 n n C16 O15 HZU sing 175 n n C17 C16 HZU doub 176 n y C18 C17 HZU sing 177 n y C19 C18 HZU doub 178 n y C20 C19 HZU sing 179 n y C21 C20 HZU doub 180 n y C22 C21 HZU sing 181 n n C23 C22 HZU sing 182 n n F25 C24 HZU sing 183 n n C24 C23 HZU sing 184 n n C26 C23 HZU sing 185 n n O27 C26 HZU doub 186 n n O28 C26 HZU sing 187 n n C03 C10 HZU sing 188 n y C16 C21 HZU sing 189 n y C13 H132 HZU sing 190 n n C13 H131 HZU sing 191 n n C17 H171 HZU sing 192 n n C20 H201 HZU sing 193 n n C22 H221 HZU sing 194 n n C22 H222 HZU sing 195 n n C24 H241 HZU sing 196 n n C24 H242 HZU sing 197 n n C01 H013 HZU sing 198 n n C01 H011 HZU sing 199 n n C01 H012 HZU sing 200 n n C02 H021 HZU sing 201 n n C02 H022 HZU sing 202 n n C12 H121 HZU sing 203 n n C12 H122 HZU sing 204 n n C14 H141 HZU sing 205 n n C14 H142 HZU sing 206 n n C18 H181 HZU sing 207 n n C19 H191 HZU sing 208 n n C23 H231 HZU sing 209 n n N06 H062 HZU sing 210 n n N06 H061 HZU sing 211 n n N09 H091 HZU sing 212 n n N09 H092 HZU sing 213 n n O28 H1 HZU sing 214 n n # _atom_sites.entry_id 5SD9 _atom_sites.fract_transf_matrix[1][1] 0.01345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 190 NAP NAP . C 3 HZU A 1 202 191 HZU LIG . D 4 SO4 A 1 203 192 SO4 SO4 . E 4 SO4 A 1 204 193 SO4 SO4 . F 4 SO4 A 1 205 194 SO4 SO4 . G 5 EDO A 1 206 195 EDO EDO . H 6 HOH A 1 301 35 HOH HOH . H 6 HOH A 2 302 82 HOH HOH . H 6 HOH A 3 303 84 HOH HOH . H 6 HOH A 4 304 128 HOH HOH . H 6 HOH A 5 305 99 HOH HOH . H 6 HOH A 6 306 121 HOH HOH . H 6 HOH A 7 307 114 HOH HOH . H 6 HOH A 8 308 113 HOH HOH . H 6 HOH A 9 309 149 HOH HOH . H 6 HOH A 10 310 155 HOH HOH . H 6 HOH A 11 311 31 HOH HOH . H 6 HOH A 12 312 41 HOH HOH . H 6 HOH A 13 313 75 HOH HOH . H 6 HOH A 14 314 97 HOH HOH . H 6 HOH A 15 315 137 HOH HOH . H 6 HOH A 16 316 47 HOH HOH . H 6 HOH A 17 317 57 HOH HOH . H 6 HOH A 18 318 49 HOH HOH . H 6 HOH A 19 319 112 HOH HOH . H 6 HOH A 20 320 11 HOH HOH . H 6 HOH A 21 321 72 HOH HOH . H 6 HOH A 22 322 58 HOH HOH . H 6 HOH A 23 323 107 HOH HOH . H 6 HOH A 24 324 6 HOH HOH . H 6 HOH A 25 325 13 HOH HOH . H 6 HOH A 26 326 46 HOH HOH . H 6 HOH A 27 327 69 HOH HOH . H 6 HOH A 28 328 55 HOH HOH . H 6 HOH A 29 329 22 HOH HOH . H 6 HOH A 30 330 21 HOH HOH . H 6 HOH A 31 331 9 HOH HOH . H 6 HOH A 32 332 16 HOH HOH . H 6 HOH A 33 333 5 HOH HOH . H 6 HOH A 34 334 90 HOH HOH . H 6 HOH A 35 335 17 HOH HOH . H 6 HOH A 36 336 89 HOH HOH . H 6 HOH A 37 337 2 HOH HOH . H 6 HOH A 38 338 56 HOH HOH . H 6 HOH A 39 339 38 HOH HOH . H 6 HOH A 40 340 19 HOH HOH . H 6 HOH A 41 341 39 HOH HOH . H 6 HOH A 42 342 7 HOH HOH . H 6 HOH A 43 343 132 HOH HOH . H 6 HOH A 44 344 109 HOH HOH . H 6 HOH A 45 345 14 HOH HOH . H 6 HOH A 46 346 25 HOH HOH . H 6 HOH A 47 347 28 HOH HOH . H 6 HOH A 48 348 23 HOH HOH . H 6 HOH A 49 349 116 HOH HOH . H 6 HOH A 50 350 32 HOH HOH . H 6 HOH A 51 351 54 HOH HOH . H 6 HOH A 52 352 52 HOH HOH . H 6 HOH A 53 353 42 HOH HOH . H 6 HOH A 54 354 40 HOH HOH . H 6 HOH A 55 355 53 HOH HOH . H 6 HOH A 56 356 1 HOH HOH . H 6 HOH A 57 357 144 HOH HOH . H 6 HOH A 58 358 33 HOH HOH . H 6 HOH A 59 359 67 HOH HOH . H 6 HOH A 60 360 135 HOH HOH . H 6 HOH A 61 361 71 HOH HOH . H 6 HOH A 62 362 36 HOH HOH . H 6 HOH A 63 363 108 HOH HOH . H 6 HOH A 64 364 95 HOH HOH . H 6 HOH A 65 365 48 HOH HOH . H 6 HOH A 66 366 30 HOH HOH . H 6 HOH A 67 367 45 HOH HOH . H 6 HOH A 68 368 110 HOH HOH . H 6 HOH A 69 369 50 HOH HOH . H 6 HOH A 70 370 66 HOH HOH . H 6 HOH A 71 371 26 HOH HOH . H 6 HOH A 72 372 93 HOH HOH . H 6 HOH A 73 373 37 HOH HOH . H 6 HOH A 74 374 27 HOH HOH . H 6 HOH A 75 375 94 HOH HOH . H 6 HOH A 76 376 18 HOH HOH . H 6 HOH A 77 377 77 HOH HOH . H 6 HOH A 78 378 117 HOH HOH . H 6 HOH A 79 379 126 HOH HOH . H 6 HOH A 80 380 24 HOH HOH . H 6 HOH A 81 381 111 HOH HOH . H 6 HOH A 82 382 86 HOH HOH . H 6 HOH A 83 383 119 HOH HOH . H 6 HOH A 84 384 122 HOH HOH . H 6 HOH A 85 385 118 HOH HOH . H 6 HOH A 86 386 92 HOH HOH . H 6 HOH A 87 387 64 HOH HOH . H 6 HOH A 88 388 44 HOH HOH . H 6 HOH A 89 389 4 HOH HOH . H 6 HOH A 90 390 87 HOH HOH . H 6 HOH A 91 391 29 HOH HOH . H 6 HOH A 92 392 78 HOH HOH . H 6 HOH A 93 393 83 HOH HOH . H 6 HOH A 94 394 80 HOH HOH . H 6 HOH A 95 395 15 HOH HOH . H 6 HOH A 96 396 51 HOH HOH . H 6 HOH A 97 397 76 HOH HOH . H 6 HOH A 98 398 8 HOH HOH . H 6 HOH A 99 399 131 HOH HOH . H 6 HOH A 100 400 123 HOH HOH . H 6 HOH A 101 401 68 HOH HOH . H 6 HOH A 102 402 10 HOH HOH . H 6 HOH A 103 403 124 HOH HOH . H 6 HOH A 104 404 115 HOH HOH . H 6 HOH A 105 405 3 HOH HOH . H 6 HOH A 106 406 63 HOH HOH . H 6 HOH A 107 407 74 HOH HOH . H 6 HOH A 108 408 20 HOH HOH . H 6 HOH A 109 409 102 HOH HOH . H 6 HOH A 110 410 65 HOH HOH . H 6 HOH A 111 411 43 HOH HOH . H 6 HOH A 112 412 127 HOH HOH . H 6 HOH A 113 413 145 HOH HOH . H 6 HOH A 114 414 60 HOH HOH . H 6 HOH A 115 415 12 HOH HOH . H 6 HOH A 116 416 129 HOH HOH . H 6 HOH A 117 417 88 HOH HOH . H 6 HOH A 118 418 134 HOH HOH . H 6 HOH A 119 419 133 HOH HOH . H 6 HOH A 120 420 81 HOH HOH . H 6 HOH A 121 421 73 HOH HOH . H 6 HOH A 122 422 62 HOH HOH . H 6 HOH A 123 423 96 HOH HOH . H 6 HOH A 124 424 154 HOH HOH . H 6 HOH A 125 425 59 HOH HOH . H 6 HOH A 126 426 79 HOH HOH . H 6 HOH A 127 427 130 HOH HOH . H 6 HOH A 128 428 143 HOH HOH . H 6 HOH A 129 429 140 HOH HOH . H 6 HOH A 130 430 139 HOH HOH . H 6 HOH A 131 431 103 HOH HOH . H 6 HOH A 132 432 136 HOH HOH . H 6 HOH A 133 433 157 HOH HOH . H 6 HOH A 134 434 142 HOH HOH . H 6 HOH A 135 435 34 HOH HOH . H 6 HOH A 136 436 104 HOH HOH . H 6 HOH A 137 437 148 HOH HOH . H 6 HOH A 138 438 147 HOH HOH . H 6 HOH A 139 439 100 HOH HOH . H 6 HOH A 140 440 153 HOH HOH . H 6 HOH A 141 441 98 HOH HOH . H 6 HOH A 142 442 85 HOH HOH . H 6 HOH A 143 443 138 HOH HOH . H 6 HOH A 144 444 150 HOH HOH . H 6 HOH A 145 445 125 HOH HOH . H 6 HOH A 146 446 70 HOH HOH . H 6 HOH A 147 447 61 HOH HOH . H 6 HOH A 148 448 146 HOH HOH . H 6 HOH A 149 449 105 HOH HOH . H 6 HOH A 150 450 101 HOH HOH . H 6 HOH A 151 451 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 HZU . . . C 3 -27.949 10.531 -25.568 1 25.41 ? C10 HZU 202 A 1 HETATM 2 C C13 HZU . . . C 3 -29.244 7.076 -25.545 1 40.26 ? C13 HZU 202 A 1 HETATM 3 C C17 HZU . . . C 3 -29.174 5.033 -29.312 1 43.26 ? C17 HZU 202 A 1 HETATM 4 C C20 HZU . . . C 3 -31.601 4.818 -30.59 1 44.88 ? C20 HZU 202 A 1 HETATM 5 C C21 HZU . . . C 3 -31.558 5.422 -29.344 1 49 ? C21 HZU 202 A 1 HETATM 6 C C22 HZU . . . C 3 -32.84 5.929 -28.716 1 56 ? C22 HZU 202 A 1 HETATM 7 C C24 HZU . . . C 3 -34.577 7.8 -28.496 1 56.25 ? C24 HZU 202 A 1 HETATM 8 C C26 HZU . . . C 3 -32.088 8.233 -28.845 1 74.04 ? C26 HZU 202 A 1 HETATM 9 C C01 HZU . . . C 3 -29.115 10.952 -28.956 1 25.39 ? C01 HZU 202 A 1 HETATM 10 C C02 HZU . . . C 3 -29.46 11.238 -27.472 1 24.01 ? C02 HZU 202 A 1 HETATM 11 C C03 HZU . . . C 3 -28.231 11.397 -26.587 1 20.67 ? C03 HZU 202 A 1 HETATM 12 C C05 HZU . . . C 3 -26.373 12.627 -26.055 1 20.4 ? C05 HZU 202 A 1 HETATM 13 C C08 HZU . . . C 3 -26.787 10.767 -24.797 1 24.77 ? C08 HZU 202 A 1 HETATM 14 C C12 HZU . . . C 3 -28.352 8.214 -26.016 1 27.71 ? C12 HZU 202 A 1 HETATM 15 C C14 HZU . . . C 3 -29.161 5.948 -26.571 1 40.86 ? C14 HZU 202 A 1 HETATM 16 C C16 HZU . . . C 3 -30.313 5.519 -28.706 1 40.72 ? C16 HZU 202 A 1 HETATM 17 C C18 HZU . . . C 3 -29.247 4.426 -30.56 1 47.31 ? C18 HZU 202 A 1 HETATM 18 C C19 HZU . . . C 3 -30.462 4.317 -31.202 1 45.27 ? C19 HZU 202 A 1 HETATM 19 C C23 HZU . . . C 3 -33.316 7.318 -29.182 1 63.15 ? C23 HZU 202 A 1 HETATM 20 F F25 HZU . . . C 3 -34.788 7.12 -27.258 1 58.07 ? F25 HZU 202 A 1 HETATM 21 N N04 HZU . . . C 3 -27.436 12.455 -26.818 1 22.06 ? N04 HZU 202 A 1 HETATM 22 N N06 HZU . . . C 3 -25.586 13.682 -26.329 1 18.01 ? N06 HZU 202 A 1 HETATM 23 N N07 HZU . . . C 3 -26.013 11.82 -25.051 1 22.86 ? N07 HZU 202 A 1 HETATM 24 N N09 HZU . . . C 3 -26.464 9.938 -23.776 1 19.98 ? N09 HZU 202 A 1 HETATM 25 O O11 HZU . . . C 3 -28.731 9.415 -25.266 1 24.71 ? O11 HZU 202 A 1 HETATM 26 O O15 HZU . . . C 3 -30.277 6.12 -27.458 1 43.81 ? O15 HZU 202 A 1 HETATM 27 O O27 HZU . . . C 3 -31.82 8.335 -27.633 1 81.69 ? O27 HZU 202 A 1 HETATM 28 O O28 HZU . . . C 3 -31.537 8.721 -29.857 1 79.26 ? O28 HZU 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #