data_5SDA # _model_server_result.job_id 1yodUazRVFdHPAdmlInCaA _model_server_result.datetime_utc '2025-01-10 10:04:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5SDA # _exptl.entry_id 5SDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SDA _cell.length_a 74.3 _cell.length_b 74.3 _cell.length_c 143.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 301 n n PA O2A NAP sing 302 n n PA O5B NAP sing 303 n n PA O3 NAP sing 304 n n O2A HOA2 NAP sing 305 n n O5B C5B NAP sing 306 n n C5B C4B NAP sing 307 n n C5B H51A NAP sing 308 n n C5B H52A NAP sing 309 n n C4B O4B NAP sing 310 n n C4B C3B NAP sing 311 n n C4B H4B NAP sing 312 n n O4B C1B NAP sing 313 n n C3B O3B NAP sing 314 n n C3B C2B NAP sing 315 n n C3B H3B NAP sing 316 n n O3B HO3A NAP sing 317 n n C2B O2B NAP sing 318 n n C2B C1B NAP sing 319 n n C2B H2B NAP sing 320 n n O2B P2B NAP sing 321 n n C1B N9A NAP sing 322 n n C1B H1B NAP sing 323 n n N9A C8A NAP sing 324 n y N9A C4A NAP sing 325 n y C8A N7A NAP doub 326 n y C8A H8A NAP sing 327 n n N7A C5A NAP sing 328 n y C5A C6A NAP sing 329 n y C5A C4A NAP doub 330 n y C6A N6A NAP sing 331 n n C6A N1A NAP doub 332 n y N6A H61A NAP sing 333 n n N6A H62A NAP sing 334 n n N1A C2A NAP sing 335 n y C2A N3A NAP doub 336 n y C2A H2A NAP sing 337 n n N3A C4A NAP sing 338 n y O3 PN NAP sing 339 n n PN O1N NAP doub 340 n n PN O2N NAP sing 341 n n PN O5D NAP sing 342 n n O5D C5D NAP sing 343 n n C5D C4D NAP sing 344 n n C5D H51N NAP sing 345 n n C5D H52N NAP sing 346 n n C4D O4D NAP sing 347 n n C4D C3D NAP sing 348 n n C4D H4D NAP sing 349 n n O4D C1D NAP sing 350 n n C3D O3D NAP sing 351 n n C3D C2D NAP sing 352 n n C3D H3D NAP sing 353 n n O3D HO3N NAP sing 354 n n C2D O2D NAP sing 355 n n C2D C1D NAP sing 356 n n C2D H2D NAP sing 357 n n O2D HO2N NAP sing 358 n n C1D N1N NAP sing 359 n n C1D H1D NAP sing 360 n n N1N C2N NAP sing 361 n y N1N C6N NAP doub 362 n y C2N C3N NAP doub 363 n y C2N H2N NAP sing 364 n n C3N C7N NAP sing 365 n n C3N C4N NAP sing 366 n y C7N O7N NAP doub 367 n n C7N N7N NAP sing 368 n n N7N H71N NAP sing 369 n n N7N H72N NAP sing 370 n n C4N C5N NAP doub 371 n y C4N H4N NAP sing 372 n n C5N C6N NAP sing 373 n y C5N H5N NAP sing 374 n n C6N H6N NAP sing 375 n n P2B O1X NAP doub 376 n n P2B O2X NAP sing 377 n n P2B O3X NAP sing 378 n n O2X HOP2 NAP sing 379 n n O3X HOP3 NAP sing 380 n n # _atom_sites.entry_id 5SDA _atom_sites.fract_transf_matrix[1][1] 0.013459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 190 NAP NAP . C 3 GI6 A 1 202 191 GI6 LIG . D 4 SO4 A 1 203 192 SO4 SO4 . E 4 SO4 A 1 204 193 SO4 SO4 . F 4 SO4 A 1 205 194 SO4 SO4 . G 5 CL A 1 206 195 CL CL . H 6 EDO A 1 207 196 EDO EDO . I 6 EDO A 1 208 197 EDO EDO . J 7 HOH A 1 301 98 HOH HOH . J 7 HOH A 2 302 86 HOH HOH . J 7 HOH A 3 303 20 HOH HOH . J 7 HOH A 4 304 111 HOH HOH . J 7 HOH A 5 305 77 HOH HOH . J 7 HOH A 6 306 53 HOH HOH . J 7 HOH A 7 307 107 HOH HOH . J 7 HOH A 8 308 16 HOH HOH . J 7 HOH A 9 309 35 HOH HOH . J 7 HOH A 10 310 31 HOH HOH . J 7 HOH A 11 311 84 HOH HOH . J 7 HOH A 12 312 30 HOH HOH . J 7 HOH A 13 313 61 HOH HOH . J 7 HOH A 14 314 87 HOH HOH . J 7 HOH A 15 315 38 HOH HOH . J 7 HOH A 16 316 65 HOH HOH . J 7 HOH A 17 317 57 HOH HOH . J 7 HOH A 18 318 60 HOH HOH . J 7 HOH A 19 319 88 HOH HOH . J 7 HOH A 20 320 85 HOH HOH . J 7 HOH A 21 321 34 HOH HOH . J 7 HOH A 22 322 103 HOH HOH . J 7 HOH A 23 323 91 HOH HOH . J 7 HOH A 24 324 29 HOH HOH . J 7 HOH A 25 325 100 HOH HOH . J 7 HOH A 26 326 11 HOH HOH . J 7 HOH A 27 327 81 HOH HOH . J 7 HOH A 28 328 26 HOH HOH . J 7 HOH A 29 329 28 HOH HOH . J 7 HOH A 30 330 18 HOH HOH . J 7 HOH A 31 331 27 HOH HOH . J 7 HOH A 32 332 108 HOH HOH . J 7 HOH A 33 333 79 HOH HOH . J 7 HOH A 34 334 22 HOH HOH . J 7 HOH A 35 335 70 HOH HOH . J 7 HOH A 36 336 17 HOH HOH . J 7 HOH A 37 337 10 HOH HOH . J 7 HOH A 38 338 40 HOH HOH . J 7 HOH A 39 339 110 HOH HOH . J 7 HOH A 40 340 99 HOH HOH . J 7 HOH A 41 341 7 HOH HOH . J 7 HOH A 42 342 73 HOH HOH . J 7 HOH A 43 343 68 HOH HOH . J 7 HOH A 44 344 13 HOH HOH . J 7 HOH A 45 345 12 HOH HOH . J 7 HOH A 46 346 15 HOH HOH . J 7 HOH A 47 347 47 HOH HOH . J 7 HOH A 48 348 32 HOH HOH . J 7 HOH A 49 349 21 HOH HOH . J 7 HOH A 50 350 58 HOH HOH . J 7 HOH A 51 351 78 HOH HOH . J 7 HOH A 52 352 44 HOH HOH . J 7 HOH A 53 353 67 HOH HOH . J 7 HOH A 54 354 6 HOH HOH . J 7 HOH A 55 355 71 HOH HOH . J 7 HOH A 56 356 2 HOH HOH . J 7 HOH A 57 357 1 HOH HOH . J 7 HOH A 58 358 89 HOH HOH . J 7 HOH A 59 359 3 HOH HOH . J 7 HOH A 60 360 101 HOH HOH . J 7 HOH A 61 361 66 HOH HOH . J 7 HOH A 62 362 46 HOH HOH . J 7 HOH A 63 363 56 HOH HOH . J 7 HOH A 64 364 74 HOH HOH . J 7 HOH A 65 365 49 HOH HOH . J 7 HOH A 66 366 8 HOH HOH . J 7 HOH A 67 367 19 HOH HOH . J 7 HOH A 68 368 96 HOH HOH . J 7 HOH A 69 369 75 HOH HOH . J 7 HOH A 70 370 41 HOH HOH . J 7 HOH A 71 371 97 HOH HOH . J 7 HOH A 72 372 106 HOH HOH . J 7 HOH A 73 373 37 HOH HOH . J 7 HOH A 74 374 82 HOH HOH . J 7 HOH A 75 375 93 HOH HOH . J 7 HOH A 76 376 9 HOH HOH . J 7 HOH A 77 377 92 HOH HOH . J 7 HOH A 78 378 50 HOH HOH . J 7 HOH A 79 379 36 HOH HOH . J 7 HOH A 80 380 95 HOH HOH . J 7 HOH A 81 381 52 HOH HOH . J 7 HOH A 82 382 5 HOH HOH . J 7 HOH A 83 383 14 HOH HOH . J 7 HOH A 84 384 4 HOH HOH . J 7 HOH A 85 385 42 HOH HOH . J 7 HOH A 86 386 104 HOH HOH . J 7 HOH A 87 387 94 HOH HOH . J 7 HOH A 88 388 39 HOH HOH . J 7 HOH A 89 389 62 HOH HOH . J 7 HOH A 90 390 25 HOH HOH . J 7 HOH A 91 391 83 HOH HOH . J 7 HOH A 92 392 80 HOH HOH . J 7 HOH A 93 393 43 HOH HOH . J 7 HOH A 94 394 24 HOH HOH . J 7 HOH A 95 395 55 HOH HOH . J 7 HOH A 96 396 45 HOH HOH . J 7 HOH A 97 397 105 HOH HOH . J 7 HOH A 98 398 76 HOH HOH . J 7 HOH A 99 399 69 HOH HOH . J 7 HOH A 100 400 102 HOH HOH . J 7 HOH A 101 401 112 HOH HOH . J 7 HOH A 102 402 109 HOH HOH . J 7 HOH A 103 403 72 HOH HOH . J 7 HOH A 104 404 59 HOH HOH . J 7 HOH A 105 405 63 HOH HOH . J 7 HOH A 106 406 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -32.158 4.262 -16.474 0.99 28.32 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 -31.187 5.062 -15.662 0.99 18.29 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 -31.658 3.97 -17.832 0.99 27.8 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 -32.615 2.845 -15.788 0.99 31.8 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 -33.11 2.891 -14.497 0.99 23.47 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 -32.769 1.521 -13.906 0.99 33.13 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 -31.553 1.143 -14.235 0.99 34.24 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 -32.814 1.567 -12.365 0.99 33.16 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 -34.094 1.257 -11.972 0.99 22.23 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 -31.795 0.479 -12.02 0.99 32.31 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 -32.359 -0.807 -12.447 0.99 35.37 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 -30.826 0.696 -12.873 0.99 31.28 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 -29.909 1.775 -12.524 0.99 29.23 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 -29.859 3.058 -12.88 0.99 25.64 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 -28.788 3.605 -12.284 0.99 26.3 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 -28.167 2.642 -11.573 0.99 25.79 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 -27.023 2.674 -10.78 0.99 27.22 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 -26.165 3.814 -10.518 0.99 27.51 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 -26.627 1.574 -10.16 0.99 25.99 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 -27.331 0.406 -10.307 0.99 27.97 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 -28.444 0.373 -11.075 0.99 28.86 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 -28.853 1.513 -11.71 0.99 28.03 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 -33.621 5.011 -16.486 0.99 27.95 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 -33.904 6.645 -16.822 0.99 27.55 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 -33.163 7.542 -15.835 0.99 26.53 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 -35.406 6.787 -16.719 0.99 34.84 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 -33.385 6.915 -18.385 0.99 29.34 ? O5D NAP 201 A 1 HETATM 28 C C5D NAP . . . B 2 -34.218 6.427 -19.414 0.99 25.27 ? C5D NAP 201 A 1 HETATM 29 C C4D NAP . . . B 2 -34.937 7.664 -19.994 0.99 34.84 ? C4D NAP 201 A 1 HETATM 30 O O4D NAP . . . B 2 -34.093 8.664 -20.239 0.99 31.51 ? O4D NAP 201 A 1 HETATM 31 C C3D NAP . . . B 2 -35.533 7.298 -21.354 0.99 34.38 ? C3D NAP 201 A 1 HETATM 32 O O3D NAP . . . B 2 -36.59 8.102 -21.601 0.99 32.27 ? O3D NAP 201 A 1 HETATM 33 C C2D NAP . . . B 2 -34.362 7.606 -22.31 0.99 29.85 ? C2D NAP 201 A 1 HETATM 34 O O2D NAP . . . B 2 -34.965 7.843 -23.646 0.99 25.73 ? O2D NAP 201 A 1 HETATM 35 C C1D NAP . . . B 2 -33.843 8.718 -21.833 0.99 31.29 ? C1D NAP 201 A 1 HETATM 36 N N1N NAP . . . B 2 -32.419 8.894 -22.018 0.99 32.64 ? N1N NAP 201 A 1 HETATM 37 C C2N NAP . . . B 2 -31.945 10.101 -22.463 0.99 28.13 ? C2N NAP 201 A 1 HETATM 38 C C3N NAP . . . B 2 -30.573 10.307 -22.614 0.99 32.87 ? C3N NAP 201 A 1 HETATM 39 C C7N NAP . . . B 2 -30.092 11.649 -23.098 0.99 29.83 ? C7N NAP 201 A 1 HETATM 40 O O7N NAP . . . B 2 -28.942 11.891 -23.197 0.99 28.17 ? O7N NAP 201 A 1 HETATM 41 N N7N NAP . . . B 2 -31.073 12.647 -23.383 0.99 28.17 ? N7N NAP 201 A 1 HETATM 42 C C4N NAP . . . B 2 -29.683 9.299 -22.316 0.99 32.76 ? C4N NAP 201 A 1 HETATM 43 C C5N NAP . . . B 2 -30.152 8.1 -21.874 0.99 33.07 ? C5N NAP 201 A 1 HETATM 44 C C6N NAP . . . B 2 -31.533 7.895 -21.718 0.99 34.22 ? C6N NAP 201 A 1 HETATM 45 P P2B NAP . . . B 2 -33.054 -1.799 -11.335 0.99 31.41 ? P2B NAP 201 A 1 HETATM 46 O O1X NAP . . . B 2 -32.044 -2.01 -10.242 0.99 30.26 ? O1X NAP 201 A 1 HETATM 47 O O2X NAP . . . B 2 -34.339 -1.158 -10.798 0.99 30.79 ? O2X NAP 201 A 1 HETATM 48 O O3X NAP . . . B 2 -33.378 -3.103 -12.072 0.99 25.96 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #