data_5SDA # _model_server_result.job_id InwwlZL6zORuMocm5tuLEQ _model_server_result.datetime_utc '2025-01-10 09:38:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5SDA # _exptl.entry_id 5SDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.449 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)-2-methylpropanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SDA _cell.length_a 74.3 _cell.length_b 74.3 _cell.length_c 143.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H27 N5 O3' _chem_comp.formula_weight 373.449 _chem_comp.id GI6 _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)-2-methylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 GI6 sing 92 n n C03 C02 GI6 sing 93 n n N04 C03 GI6 doub 94 n y C05 N04 GI6 sing 95 n y N06 C05 GI6 sing 96 n n N07 C05 GI6 doub 97 n y C08 N07 GI6 sing 98 n y N09 C08 GI6 sing 99 n n C10 C08 GI6 doub 100 n y O11 C10 GI6 sing 101 n n C12 O11 GI6 sing 102 n n C13 C12 GI6 sing 103 n n C14 C13 GI6 sing 104 n n O15 C14 GI6 sing 105 n n C16 O15 GI6 sing 106 n n C17 C16 GI6 doub 107 n y C18 C17 GI6 sing 108 n y C19 C18 GI6 doub 109 n y C20 C19 GI6 sing 110 n y C21 C20 GI6 doub 111 n y C22 C21 GI6 sing 112 n n C23 C22 GI6 sing 113 n n C24 C23 GI6 sing 114 n n C25 C23 GI6 sing 115 n n N26 C25 GI6 sing 116 n n O27 C25 GI6 doub 117 n n C03 C10 GI6 sing 118 n y C16 C21 GI6 sing 119 n y C13 H132 GI6 sing 120 n n C13 H131 GI6 sing 121 n n C17 H171 GI6 sing 122 n n C20 H201 GI6 sing 123 n n C22 H221 GI6 sing 124 n n C22 H222 GI6 sing 125 n n C24 H242 GI6 sing 126 n n C24 H241 GI6 sing 127 n n C24 H243 GI6 sing 128 n n C01 H013 GI6 sing 129 n n C01 H011 GI6 sing 130 n n C01 H012 GI6 sing 131 n n C02 H021 GI6 sing 132 n n C02 H022 GI6 sing 133 n n C12 H121 GI6 sing 134 n n C12 H122 GI6 sing 135 n n C14 H141 GI6 sing 136 n n C14 H142 GI6 sing 137 n n C18 H181 GI6 sing 138 n n C19 H191 GI6 sing 139 n n C23 H231 GI6 sing 140 n n N06 H062 GI6 sing 141 n n N06 H061 GI6 sing 142 n n N09 H091 GI6 sing 143 n n N09 H092 GI6 sing 144 n n N26 H262 GI6 sing 145 n n N26 H261 GI6 sing 146 n n # _atom_sites.entry_id 5SDA _atom_sites.fract_transf_matrix[1][1] 0.013459 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 190 NAP NAP . C 3 GI6 A 1 202 191 GI6 LIG . D 4 SO4 A 1 203 192 SO4 SO4 . E 4 SO4 A 1 204 193 SO4 SO4 . F 4 SO4 A 1 205 194 SO4 SO4 . G 5 CL A 1 206 195 CL CL . H 6 EDO A 1 207 196 EDO EDO . I 6 EDO A 1 208 197 EDO EDO . J 7 HOH A 1 301 98 HOH HOH . J 7 HOH A 2 302 86 HOH HOH . J 7 HOH A 3 303 20 HOH HOH . J 7 HOH A 4 304 111 HOH HOH . J 7 HOH A 5 305 77 HOH HOH . J 7 HOH A 6 306 53 HOH HOH . J 7 HOH A 7 307 107 HOH HOH . J 7 HOH A 8 308 16 HOH HOH . J 7 HOH A 9 309 35 HOH HOH . J 7 HOH A 10 310 31 HOH HOH . J 7 HOH A 11 311 84 HOH HOH . J 7 HOH A 12 312 30 HOH HOH . J 7 HOH A 13 313 61 HOH HOH . J 7 HOH A 14 314 87 HOH HOH . J 7 HOH A 15 315 38 HOH HOH . J 7 HOH A 16 316 65 HOH HOH . J 7 HOH A 17 317 57 HOH HOH . J 7 HOH A 18 318 60 HOH HOH . J 7 HOH A 19 319 88 HOH HOH . J 7 HOH A 20 320 85 HOH HOH . J 7 HOH A 21 321 34 HOH HOH . J 7 HOH A 22 322 103 HOH HOH . J 7 HOH A 23 323 91 HOH HOH . J 7 HOH A 24 324 29 HOH HOH . J 7 HOH A 25 325 100 HOH HOH . J 7 HOH A 26 326 11 HOH HOH . J 7 HOH A 27 327 81 HOH HOH . J 7 HOH A 28 328 26 HOH HOH . J 7 HOH A 29 329 28 HOH HOH . J 7 HOH A 30 330 18 HOH HOH . J 7 HOH A 31 331 27 HOH HOH . J 7 HOH A 32 332 108 HOH HOH . J 7 HOH A 33 333 79 HOH HOH . J 7 HOH A 34 334 22 HOH HOH . J 7 HOH A 35 335 70 HOH HOH . J 7 HOH A 36 336 17 HOH HOH . J 7 HOH A 37 337 10 HOH HOH . J 7 HOH A 38 338 40 HOH HOH . J 7 HOH A 39 339 110 HOH HOH . J 7 HOH A 40 340 99 HOH HOH . J 7 HOH A 41 341 7 HOH HOH . J 7 HOH A 42 342 73 HOH HOH . J 7 HOH A 43 343 68 HOH HOH . J 7 HOH A 44 344 13 HOH HOH . J 7 HOH A 45 345 12 HOH HOH . J 7 HOH A 46 346 15 HOH HOH . J 7 HOH A 47 347 47 HOH HOH . J 7 HOH A 48 348 32 HOH HOH . J 7 HOH A 49 349 21 HOH HOH . J 7 HOH A 50 350 58 HOH HOH . J 7 HOH A 51 351 78 HOH HOH . J 7 HOH A 52 352 44 HOH HOH . J 7 HOH A 53 353 67 HOH HOH . J 7 HOH A 54 354 6 HOH HOH . J 7 HOH A 55 355 71 HOH HOH . J 7 HOH A 56 356 2 HOH HOH . J 7 HOH A 57 357 1 HOH HOH . J 7 HOH A 58 358 89 HOH HOH . J 7 HOH A 59 359 3 HOH HOH . J 7 HOH A 60 360 101 HOH HOH . J 7 HOH A 61 361 66 HOH HOH . J 7 HOH A 62 362 46 HOH HOH . J 7 HOH A 63 363 56 HOH HOH . J 7 HOH A 64 364 74 HOH HOH . J 7 HOH A 65 365 49 HOH HOH . J 7 HOH A 66 366 8 HOH HOH . J 7 HOH A 67 367 19 HOH HOH . J 7 HOH A 68 368 96 HOH HOH . J 7 HOH A 69 369 75 HOH HOH . J 7 HOH A 70 370 41 HOH HOH . J 7 HOH A 71 371 97 HOH HOH . J 7 HOH A 72 372 106 HOH HOH . J 7 HOH A 73 373 37 HOH HOH . J 7 HOH A 74 374 82 HOH HOH . J 7 HOH A 75 375 93 HOH HOH . J 7 HOH A 76 376 9 HOH HOH . J 7 HOH A 77 377 92 HOH HOH . J 7 HOH A 78 378 50 HOH HOH . J 7 HOH A 79 379 36 HOH HOH . J 7 HOH A 80 380 95 HOH HOH . J 7 HOH A 81 381 52 HOH HOH . J 7 HOH A 82 382 5 HOH HOH . J 7 HOH A 83 383 14 HOH HOH . J 7 HOH A 84 384 4 HOH HOH . J 7 HOH A 85 385 42 HOH HOH . J 7 HOH A 86 386 104 HOH HOH . J 7 HOH A 87 387 94 HOH HOH . J 7 HOH A 88 388 39 HOH HOH . J 7 HOH A 89 389 62 HOH HOH . J 7 HOH A 90 390 25 HOH HOH . J 7 HOH A 91 391 83 HOH HOH . J 7 HOH A 92 392 80 HOH HOH . J 7 HOH A 93 393 43 HOH HOH . J 7 HOH A 94 394 24 HOH HOH . J 7 HOH A 95 395 55 HOH HOH . J 7 HOH A 96 396 45 HOH HOH . J 7 HOH A 97 397 105 HOH HOH . J 7 HOH A 98 398 76 HOH HOH . J 7 HOH A 99 399 69 HOH HOH . J 7 HOH A 100 400 102 HOH HOH . J 7 HOH A 101 401 112 HOH HOH . J 7 HOH A 102 402 109 HOH HOH . J 7 HOH A 103 403 72 HOH HOH . J 7 HOH A 104 404 59 HOH HOH . J 7 HOH A 105 405 63 HOH HOH . J 7 HOH A 106 406 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GI6 . . . C 3 -27.924 10.245 -25.662 1 28.33 ? C10 GI6 202 A 1 HETATM 2 C C13 GI6 . . . C 3 -29.039 6.788 -25.667 1 32.36 ? C13 GI6 202 A 1 HETATM 3 C C17 GI6 . . . C 3 -28.911 4.584 -29.307 1 27.41 ? C17 GI6 202 A 1 HETATM 4 C C20 GI6 . . . C 3 -31.315 4.431 -30.621 1 26.81 ? C20 GI6 202 A 1 HETATM 5 C C21 GI6 . . . C 3 -31.269 5.049 -29.394 1 30.18 ? C21 GI6 202 A 1 HETATM 6 C C22 GI6 . . . C 3 -32.5 5.639 -28.748 1 30.31 ? C22 GI6 202 A 1 HETATM 7 C C24 GI6 . . . C 3 -31.823 8.065 -29.382 1 34.93 ? C24 GI6 202 A 1 HETATM 8 C C01 GI6 . . . C 3 -29.031 10.871 -29.076 1 10.85 ? C01 GI6 202 A 1 HETATM 9 C C02 GI6 . . . C 3 -29.409 10.915 -27.579 1 22.26 ? C02 GI6 202 A 1 HETATM 10 C C03 GI6 . . . C 3 -28.211 11.111 -26.671 1 24.84 ? C03 GI6 202 A 1 HETATM 11 C C05 GI6 . . . C 3 -26.366 12.354 -26.103 1 25.1 ? C05 GI6 202 A 1 HETATM 12 C C08 GI6 . . . C 3 -26.782 10.501 -24.861 1 26.69 ? C08 GI6 202 A 1 HETATM 13 C C12 GI6 . . . C 3 -28.294 7.983 -26.224 1 27.76 ? C12 GI6 202 A 1 HETATM 14 C C14 GI6 . . . C 3 -28.905 5.62 -26.634 1 30.83 ? C14 GI6 202 A 1 HETATM 15 C C16 GI6 . . . C 3 -30.042 5.123 -28.738 1 29.55 ? C16 GI6 202 A 1 HETATM 16 C C18 GI6 . . . C 3 -28.971 3.97 -30.55 1 23.65 ? C18 GI6 202 A 1 HETATM 17 C C19 GI6 . . . C 3 -30.178 3.886 -31.198 1 25.44 ? C19 GI6 202 A 1 HETATM 18 C C23 GI6 . . . C 3 -32.924 6.974 -29.392 1 34.54 ? C23 GI6 202 A 1 HETATM 19 C C25 GI6 . . . C 3 -34.087 7.526 -28.594 1 37.97 ? C25 GI6 202 A 1 HETATM 20 N N04 GI6 . . . C 3 -27.421 12.167 -26.889 1 28.35 ? N04 GI6 202 A 1 HETATM 21 N N06 GI6 . . . C 3 -25.591 13.432 -26.338 1 20.7 ? N06 GI6 202 A 1 HETATM 22 N N07 GI6 . . . C 3 -26.018 11.553 -25.091 1 23.98 ? N07 GI6 202 A 1 HETATM 23 N N09 GI6 . . . C 3 -26.439 9.688 -23.835 1 21.69 ? N09 GI6 202 A 1 HETATM 24 N N26 GI6 . . . C 3 -34.945 8.265 -29.35 1 38.15 ? N26 GI6 202 A 1 HETATM 25 O O11 GI6 . . . C 3 -28.709 9.124 -25.421 1 27.5 ? O11 GI6 202 A 1 HETATM 26 O O15 GI6 . . . C 3 -30.042 5.741 -27.506 1 32.91 ? O15 GI6 202 A 1 HETATM 27 O O27 GI6 . . . C 3 -34.235 7.319 -27.393 1 38.45 ? O27 GI6 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #