data_5SDB # _model_server_result.job_id PDqCWJGq5-Q7UFO3NAr1Bw _model_server_result.datetime_utc '2024-11-25 13:37:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":204}' # _entry.id 5SDB # _exptl.entry_id 5SDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.05 _cell.angle_beta 101.88 _cell.angle_gamma 120 _cell.entry_id 5SDB _cell.length_a 37.09 _cell.length_b 42.74 _cell.length_c 72.29 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5SDB _atom_sites.fract_transf_matrix[1][1] 0.026961 _atom_sites.fract_transf_matrix[1][2] 0.015569 _atom_sites.fract_transf_matrix[1][3] 0.007977 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027018 _atom_sites.fract_transf_matrix[2][3] 0.003902 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 188 NAP NAP . D 3 G3V A 1 202 189 G3V FTF . E 4 EDO A 1 203 2 EDO EDO . F 2 NAP B 1 201 188 NAP NAP . G 3 G3V B 1 202 189 G3V FTF . H 4 EDO B 1 203 189 EDO EDO . I 4 EDO B 1 204 190 EDO EDO . J 5 HOH A 1 301 334 HOH HOH . J 5 HOH A 2 302 362 HOH HOH . J 5 HOH A 3 303 214 HOH HOH . J 5 HOH A 4 304 271 HOH HOH . J 5 HOH A 5 305 356 HOH HOH . J 5 HOH A 6 306 205 HOH HOH . J 5 HOH A 7 307 365 HOH HOH . J 5 HOH A 8 308 315 HOH HOH . J 5 HOH A 9 309 202 HOH HOH . J 5 HOH A 10 310 228 HOH HOH . J 5 HOH A 11 311 161 HOH HOH . J 5 HOH A 12 312 118 HOH HOH . J 5 HOH A 13 313 171 HOH HOH . J 5 HOH A 14 314 174 HOH HOH . J 5 HOH A 15 315 193 HOH HOH . J 5 HOH A 16 316 340 HOH HOH . J 5 HOH A 17 317 255 HOH HOH . J 5 HOH A 18 318 134 HOH HOH . J 5 HOH A 19 319 195 HOH HOH . J 5 HOH A 20 320 235 HOH HOH . J 5 HOH A 21 321 165 HOH HOH . J 5 HOH A 22 322 194 HOH HOH . J 5 HOH A 23 323 268 HOH HOH . J 5 HOH A 24 324 145 HOH HOH . J 5 HOH A 25 325 140 HOH HOH . J 5 HOH A 26 326 203 HOH HOH . J 5 HOH A 27 327 197 HOH HOH . J 5 HOH A 28 328 236 HOH HOH . J 5 HOH A 29 329 121 HOH HOH . J 5 HOH A 30 330 136 HOH HOH . J 5 HOH A 31 331 150 HOH HOH . J 5 HOH A 32 332 159 HOH HOH . J 5 HOH A 33 333 192 HOH HOH . J 5 HOH A 34 334 114 HOH HOH . J 5 HOH A 35 335 124 HOH HOH . J 5 HOH A 36 336 156 HOH HOH . J 5 HOH A 37 337 141 HOH HOH . J 5 HOH A 38 338 300 HOH HOH . J 5 HOH A 39 339 207 HOH HOH . J 5 HOH A 40 340 153 HOH HOH . J 5 HOH A 41 341 132 HOH HOH . J 5 HOH A 42 342 242 HOH HOH . J 5 HOH A 43 343 338 HOH HOH . J 5 HOH A 44 344 199 HOH HOH . J 5 HOH A 45 345 175 HOH HOH . J 5 HOH A 46 346 113 HOH HOH . J 5 HOH A 47 347 127 HOH HOH . J 5 HOH A 48 348 179 HOH HOH . J 5 HOH A 49 349 273 HOH HOH . J 5 HOH A 50 350 181 HOH HOH . J 5 HOH A 51 351 211 HOH HOH . J 5 HOH A 52 352 307 HOH HOH . J 5 HOH A 53 353 185 HOH HOH . J 5 HOH A 54 354 137 HOH HOH . J 5 HOH A 55 355 357 HOH HOH . J 5 HOH A 56 356 187 HOH HOH . J 5 HOH A 57 357 170 HOH HOH . J 5 HOH A 58 358 204 HOH HOH . J 5 HOH A 59 359 112 HOH HOH . J 5 HOH A 60 360 257 HOH HOH . J 5 HOH A 61 361 119 HOH HOH . J 5 HOH A 62 362 120 HOH HOH . J 5 HOH A 63 363 122 HOH HOH . J 5 HOH A 64 364 135 HOH HOH . J 5 HOH A 65 365 147 HOH HOH . J 5 HOH A 66 366 126 HOH HOH . J 5 HOH A 67 367 18 HOH HOH . J 5 HOH A 68 368 115 HOH HOH . J 5 HOH A 69 369 131 HOH HOH . J 5 HOH A 70 370 239 HOH HOH . J 5 HOH A 71 371 209 HOH HOH . J 5 HOH A 72 372 260 HOH HOH . J 5 HOH A 73 373 168 HOH HOH . J 5 HOH A 74 374 252 HOH HOH . J 5 HOH A 75 375 226 HOH HOH . J 5 HOH A 76 376 148 HOH HOH . J 5 HOH A 77 377 169 HOH HOH . J 5 HOH A 78 378 310 HOH HOH . J 5 HOH A 79 379 144 HOH HOH . J 5 HOH A 80 380 149 HOH HOH . J 5 HOH A 81 381 125 HOH HOH . J 5 HOH A 82 382 142 HOH HOH . J 5 HOH A 83 383 249 HOH HOH . J 5 HOH A 84 384 117 HOH HOH . J 5 HOH A 85 385 247 HOH HOH . J 5 HOH A 86 386 143 HOH HOH . J 5 HOH A 87 387 246 HOH HOH . J 5 HOH A 88 388 158 HOH HOH . J 5 HOH A 89 389 272 HOH HOH . J 5 HOH A 90 390 227 HOH HOH . J 5 HOH A 91 391 129 HOH HOH . J 5 HOH A 92 392 189 HOH HOH . J 5 HOH A 93 393 182 HOH HOH . J 5 HOH A 94 394 173 HOH HOH . J 5 HOH A 95 395 232 HOH HOH . J 5 HOH A 96 396 180 HOH HOH . J 5 HOH A 97 397 177 HOH HOH . J 5 HOH A 98 398 267 HOH HOH . J 5 HOH A 99 399 244 HOH HOH . J 5 HOH A 100 400 154 HOH HOH . J 5 HOH A 101 401 196 HOH HOH . J 5 HOH A 102 402 311 HOH HOH . J 5 HOH A 103 403 163 HOH HOH . J 5 HOH A 104 404 201 HOH HOH . J 5 HOH A 105 405 256 HOH HOH . J 5 HOH A 106 406 217 HOH HOH . J 5 HOH A 107 407 133 HOH HOH . J 5 HOH A 108 408 128 HOH HOH . J 5 HOH A 109 409 231 HOH HOH . J 5 HOH A 110 410 274 HOH HOH . J 5 HOH A 111 411 223 HOH HOH . J 5 HOH A 112 412 312 HOH HOH . J 5 HOH A 113 413 176 HOH HOH . J 5 HOH A 114 414 215 HOH HOH . J 5 HOH A 115 415 116 HOH HOH . J 5 HOH A 116 416 302 HOH HOH . J 5 HOH A 117 417 265 HOH HOH . J 5 HOH A 118 418 221 HOH HOH . J 5 HOH A 119 419 186 HOH HOH . J 5 HOH A 120 420 146 HOH HOH . J 5 HOH A 121 421 166 HOH HOH . J 5 HOH A 122 422 151 HOH HOH . J 5 HOH A 123 423 45 HOH HOH . J 5 HOH A 124 424 328 HOH HOH . J 5 HOH A 125 425 198 HOH HOH . J 5 HOH A 126 426 245 HOH HOH . J 5 HOH A 127 427 130 HOH HOH . J 5 HOH A 128 428 222 HOH HOH . J 5 HOH A 129 429 164 HOH HOH . J 5 HOH A 130 430 212 HOH HOH . J 5 HOH A 131 431 326 HOH HOH . J 5 HOH A 132 432 322 HOH HOH . J 5 HOH A 133 433 253 HOH HOH . J 5 HOH A 134 434 178 HOH HOH . J 5 HOH A 135 435 167 HOH HOH . J 5 HOH A 136 436 350 HOH HOH . J 5 HOH A 137 437 266 HOH HOH . J 5 HOH A 138 438 277 HOH HOH . J 5 HOH A 139 439 184 HOH HOH . J 5 HOH A 140 440 220 HOH HOH . J 5 HOH A 141 441 237 HOH HOH . J 5 HOH A 142 442 309 HOH HOH . J 5 HOH A 143 443 183 HOH HOH . J 5 HOH A 144 444 335 HOH HOH . J 5 HOH A 145 445 208 HOH HOH . J 5 HOH A 146 446 262 HOH HOH . J 5 HOH A 147 447 240 HOH HOH . J 5 HOH A 148 448 218 HOH HOH . J 5 HOH A 149 449 229 HOH HOH . J 5 HOH A 150 450 248 HOH HOH . J 5 HOH A 151 451 352 HOH HOH . J 5 HOH A 152 452 250 HOH HOH . J 5 HOH A 153 453 336 HOH HOH . J 5 HOH A 154 454 329 HOH HOH . J 5 HOH A 155 455 251 HOH HOH . J 5 HOH A 156 456 162 HOH HOH . J 5 HOH A 157 457 301 HOH HOH . J 5 HOH A 158 458 339 HOH HOH . J 5 HOH A 159 459 241 HOH HOH . J 5 HOH A 160 460 358 HOH HOH . J 5 HOH A 161 461 206 HOH HOH . J 5 HOH A 162 462 337 HOH HOH . J 5 HOH A 163 463 210 HOH HOH . J 5 HOH A 164 464 190 HOH HOH . J 5 HOH A 165 465 254 HOH HOH . J 5 HOH A 166 466 213 HOH HOH . J 5 HOH A 167 467 275 HOH HOH . J 5 HOH A 168 468 188 HOH HOH . J 5 HOH A 169 469 354 HOH HOH . J 5 HOH A 170 470 152 HOH HOH . J 5 HOH A 171 471 303 HOH HOH . J 5 HOH A 172 472 191 HOH HOH . J 5 HOH A 173 473 238 HOH HOH . J 5 HOH A 174 474 216 HOH HOH . J 5 HOH A 175 475 139 HOH HOH . J 5 HOH A 176 476 321 HOH HOH . J 5 HOH A 177 477 225 HOH HOH . J 5 HOH A 178 478 361 HOH HOH . J 5 HOH A 179 479 304 HOH HOH . J 5 HOH A 180 480 200 HOH HOH . K 5 HOH B 1 301 38 HOH HOH . K 5 HOH B 2 302 41 HOH HOH . K 5 HOH B 3 303 54 HOH HOH . K 5 HOH B 4 304 282 HOH HOH . K 5 HOH B 5 305 157 HOH HOH . K 5 HOH B 6 306 73 HOH HOH . K 5 HOH B 7 307 285 HOH HOH . K 5 HOH B 8 308 104 HOH HOH . K 5 HOH B 9 309 24 HOH HOH . K 5 HOH B 10 310 72 HOH HOH . K 5 HOH B 11 311 348 HOH HOH . K 5 HOH B 12 312 278 HOH HOH . K 5 HOH B 13 313 66 HOH HOH . K 5 HOH B 14 314 313 HOH HOH . K 5 HOH B 15 315 83 HOH HOH . K 5 HOH B 16 316 306 HOH HOH . K 5 HOH B 17 317 160 HOH HOH . K 5 HOH B 18 318 81 HOH HOH . K 5 HOH B 19 319 110 HOH HOH . K 5 HOH B 20 320 44 HOH HOH . K 5 HOH B 21 321 69 HOH HOH . K 5 HOH B 22 322 355 HOH HOH . K 5 HOH B 23 323 61 HOH HOH . K 5 HOH B 24 324 5 HOH HOH . K 5 HOH B 25 325 39 HOH HOH . K 5 HOH B 26 326 17 HOH HOH . K 5 HOH B 27 327 3 HOH HOH . K 5 HOH B 28 328 19 HOH HOH . K 5 HOH B 29 329 30 HOH HOH . K 5 HOH B 30 330 347 HOH HOH . K 5 HOH B 31 331 87 HOH HOH . K 5 HOH B 32 332 297 HOH HOH . K 5 HOH B 33 333 299 HOH HOH . K 5 HOH B 34 334 57 HOH HOH . K 5 HOH B 35 335 8 HOH HOH . K 5 HOH B 36 336 53 HOH HOH . K 5 HOH B 37 337 25 HOH HOH . K 5 HOH B 38 338 86 HOH HOH . K 5 HOH B 39 339 33 HOH HOH . K 5 HOH B 40 340 11 HOH HOH . K 5 HOH B 41 341 319 HOH HOH . K 5 HOH B 42 342 79 HOH HOH . K 5 HOH B 43 343 298 HOH HOH . K 5 HOH B 44 344 80 HOH HOH . K 5 HOH B 45 345 289 HOH HOH . K 5 HOH B 46 346 68 HOH HOH . K 5 HOH B 47 347 46 HOH HOH . K 5 HOH B 48 348 96 HOH HOH . K 5 HOH B 49 349 47 HOH HOH . K 5 HOH B 50 350 37 HOH HOH . K 5 HOH B 51 351 2 HOH HOH . K 5 HOH B 52 352 59 HOH HOH . K 5 HOH B 53 353 93 HOH HOH . K 5 HOH B 54 354 293 HOH HOH . K 5 HOH B 55 355 264 HOH HOH . K 5 HOH B 56 356 62 HOH HOH . K 5 HOH B 57 357 32 HOH HOH . K 5 HOH B 58 358 283 HOH HOH . K 5 HOH B 59 359 60 HOH HOH . K 5 HOH B 60 360 6 HOH HOH . K 5 HOH B 61 361 314 HOH HOH . K 5 HOH B 62 362 48 HOH HOH . K 5 HOH B 63 363 70 HOH HOH . K 5 HOH B 64 364 351 HOH HOH . K 5 HOH B 65 365 9 HOH HOH . K 5 HOH B 66 366 89 HOH HOH . K 5 HOH B 67 367 1 HOH HOH . K 5 HOH B 68 368 270 HOH HOH . K 5 HOH B 69 369 34 HOH HOH . K 5 HOH B 70 370 14 HOH HOH . K 5 HOH B 71 371 27 HOH HOH . K 5 HOH B 72 372 15 HOH HOH . K 5 HOH B 73 373 71 HOH HOH . K 5 HOH B 74 374 279 HOH HOH . K 5 HOH B 75 375 13 HOH HOH . K 5 HOH B 76 376 50 HOH HOH . K 5 HOH B 77 377 10 HOH HOH . K 5 HOH B 78 378 23 HOH HOH . K 5 HOH B 79 379 75 HOH HOH . K 5 HOH B 80 380 345 HOH HOH . K 5 HOH B 81 381 22 HOH HOH . K 5 HOH B 82 382 294 HOH HOH . K 5 HOH B 83 383 343 HOH HOH . K 5 HOH B 84 384 43 HOH HOH . K 5 HOH B 85 385 74 HOH HOH . K 5 HOH B 86 386 52 HOH HOH . K 5 HOH B 87 387 295 HOH HOH . K 5 HOH B 88 388 55 HOH HOH . K 5 HOH B 89 389 296 HOH HOH . K 5 HOH B 90 390 29 HOH HOH . K 5 HOH B 91 391 88 HOH HOH . K 5 HOH B 92 392 12 HOH HOH . K 5 HOH B 93 393 51 HOH HOH . K 5 HOH B 94 394 324 HOH HOH . K 5 HOH B 95 395 290 HOH HOH . K 5 HOH B 96 396 103 HOH HOH . K 5 HOH B 97 397 4 HOH HOH . K 5 HOH B 98 398 82 HOH HOH . K 5 HOH B 99 399 7 HOH HOH . K 5 HOH B 100 400 320 HOH HOH . K 5 HOH B 101 401 36 HOH HOH . K 5 HOH B 102 402 64 HOH HOH . K 5 HOH B 103 403 65 HOH HOH . K 5 HOH B 104 404 20 HOH HOH . K 5 HOH B 105 405 92 HOH HOH . K 5 HOH B 106 406 327 HOH HOH . K 5 HOH B 107 407 353 HOH HOH . K 5 HOH B 108 408 95 HOH HOH . K 5 HOH B 109 409 42 HOH HOH . K 5 HOH B 110 410 49 HOH HOH . K 5 HOH B 111 411 346 HOH HOH . K 5 HOH B 112 412 84 HOH HOH . K 5 HOH B 113 413 317 HOH HOH . K 5 HOH B 114 414 325 HOH HOH . K 5 HOH B 115 415 28 HOH HOH . K 5 HOH B 116 416 281 HOH HOH . K 5 HOH B 117 417 31 HOH HOH . K 5 HOH B 118 418 99 HOH HOH . K 5 HOH B 119 419 318 HOH HOH . K 5 HOH B 120 420 316 HOH HOH . K 5 HOH B 121 421 323 HOH HOH . K 5 HOH B 122 422 349 HOH HOH . K 5 HOH B 123 423 90 HOH HOH . K 5 HOH B 124 424 76 HOH HOH . K 5 HOH B 125 425 58 HOH HOH . K 5 HOH B 126 426 286 HOH HOH . K 5 HOH B 127 427 292 HOH HOH . K 5 HOH B 128 428 56 HOH HOH . K 5 HOH B 129 429 360 HOH HOH . K 5 HOH B 130 430 308 HOH HOH . K 5 HOH B 131 431 341 HOH HOH . K 5 HOH B 132 432 359 HOH HOH . K 5 HOH B 133 433 102 HOH HOH . K 5 HOH B 134 434 288 HOH HOH . K 5 HOH B 135 435 108 HOH HOH . K 5 HOH B 136 436 364 HOH HOH . K 5 HOH B 137 437 342 HOH HOH . K 5 HOH B 138 438 101 HOH HOH . K 5 HOH B 139 439 332 HOH HOH . K 5 HOH B 140 440 287 HOH HOH . K 5 HOH B 141 441 330 HOH HOH . K 5 HOH B 142 442 263 HOH HOH . K 5 HOH B 143 443 331 HOH HOH . K 5 HOH B 144 444 94 HOH HOH . K 5 HOH B 145 445 280 HOH HOH . K 5 HOH B 146 446 363 HOH HOH . K 5 HOH B 147 447 344 HOH HOH . K 5 HOH B 148 448 284 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 4 -30.492 22.16 62.199 1 52.88 ? C1 EDO 204 B 1 HETATM 2 O O1 EDO . . . I 4 -30.099 20.929 61.587 1 45.84 ? O1 EDO 204 B 1 HETATM 3 C C2 EDO . . . I 4 -31.468 21.902 63.339 1 56.64 ? C2 EDO 204 B 1 HETATM 4 O O2 EDO . . . I 4 -31.383 22.987 64.268 1 61.65 ? O2 EDO 204 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #