data_5SDO # _model_server_result.job_id VLphPUfQj-M7evkyJ1pnbw _model_server_result.datetime_utc '2024-10-10 08:16:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 5SDO # _exptl.entry_id 5SDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 223.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-fluorophenoxy)-1-(pyrrolidin-1-yl)ethan-1-one _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SDO _cell.length_a 101.802 _cell.length_b 117.06 _cell.length_c 147.933 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 49 A CYS 69 1_555 A SG CYS 66 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 B SG CYS 49 B CYS 69 1_555 B SG CYS 66 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C12 H14 F N O2' _chem_comp.formula_weight 223.243 _chem_comp.id I8G _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-fluorophenoxy)-1-(pyrrolidin-1-yl)ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SDO _atom_sites.fract_transf_matrix[1][1] 0.009823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I8G A 1 801 801 I8G LIG . D 3 CL A 1 802 1 CL CL . E 3 CL A 1 803 2 CL CL . F 2 I8G A 1 804 1 I8G LIG . G 2 I8G B 1 801 801 I8G LIG . H 3 CL B 1 802 3 CL CL . I 4 HOH A 1 901 197 HOH HOH . I 4 HOH A 2 902 61 HOH HOH . I 4 HOH A 3 903 20 HOH HOH . I 4 HOH A 4 904 247 HOH HOH . I 4 HOH A 5 905 277 HOH HOH . I 4 HOH A 6 906 204 HOH HOH . I 4 HOH A 7 907 10 HOH HOH . I 4 HOH A 8 908 276 HOH HOH . I 4 HOH A 9 909 255 HOH HOH . I 4 HOH A 10 910 52 HOH HOH . I 4 HOH A 11 911 72 HOH HOH . I 4 HOH A 12 912 198 HOH HOH . I 4 HOH A 13 913 81 HOH HOH . I 4 HOH A 14 914 59 HOH HOH . I 4 HOH A 15 915 131 HOH HOH . I 4 HOH A 16 916 56 HOH HOH . I 4 HOH A 17 917 152 HOH HOH . I 4 HOH A 18 918 227 HOH HOH . I 4 HOH A 19 919 262 HOH HOH . I 4 HOH A 20 920 54 HOH HOH . I 4 HOH A 21 921 18 HOH HOH . I 4 HOH A 22 922 156 HOH HOH . I 4 HOH A 23 923 110 HOH HOH . I 4 HOH A 24 924 136 HOH HOH . I 4 HOH A 25 925 158 HOH HOH . I 4 HOH A 26 926 191 HOH HOH . I 4 HOH A 27 927 3 HOH HOH . I 4 HOH A 28 928 6 HOH HOH . I 4 HOH A 29 929 47 HOH HOH . I 4 HOH A 30 930 120 HOH HOH . I 4 HOH A 31 931 9 HOH HOH . I 4 HOH A 32 932 35 HOH HOH . I 4 HOH A 33 933 280 HOH HOH . I 4 HOH A 34 934 192 HOH HOH . I 4 HOH A 35 935 28 HOH HOH . I 4 HOH A 36 936 46 HOH HOH . I 4 HOH A 37 937 104 HOH HOH . I 4 HOH A 38 938 278 HOH HOH . I 4 HOH A 39 939 216 HOH HOH . I 4 HOH A 40 940 63 HOH HOH . I 4 HOH A 41 941 44 HOH HOH . I 4 HOH A 42 942 91 HOH HOH . I 4 HOH A 43 943 27 HOH HOH . I 4 HOH A 44 944 19 HOH HOH . I 4 HOH A 45 945 83 HOH HOH . I 4 HOH A 46 946 98 HOH HOH . I 4 HOH A 47 947 43 HOH HOH . I 4 HOH A 48 948 114 HOH HOH . I 4 HOH A 49 949 248 HOH HOH . I 4 HOH A 50 950 7 HOH HOH . I 4 HOH A 51 951 32 HOH HOH . I 4 HOH A 52 952 163 HOH HOH . I 4 HOH A 53 953 14 HOH HOH . I 4 HOH A 54 954 212 HOH HOH . I 4 HOH A 55 955 224 HOH HOH . I 4 HOH A 56 956 201 HOH HOH . I 4 HOH A 57 957 140 HOH HOH . I 4 HOH A 58 958 213 HOH HOH . I 4 HOH A 59 959 273 HOH HOH . I 4 HOH A 60 960 64 HOH HOH . I 4 HOH A 61 961 95 HOH HOH . I 4 HOH A 62 962 162 HOH HOH . I 4 HOH A 63 963 172 HOH HOH . I 4 HOH A 64 964 251 HOH HOH . I 4 HOH A 65 965 103 HOH HOH . I 4 HOH A 66 966 220 HOH HOH . I 4 HOH A 67 967 107 HOH HOH . I 4 HOH A 68 968 194 HOH HOH . I 4 HOH A 69 969 244 HOH HOH . I 4 HOH A 70 970 263 HOH HOH . I 4 HOH A 71 971 26 HOH HOH . I 4 HOH A 72 972 89 HOH HOH . I 4 HOH A 73 973 188 HOH HOH . I 4 HOH A 74 974 77 HOH HOH . I 4 HOH A 75 975 189 HOH HOH . I 4 HOH A 76 976 226 HOH HOH . I 4 HOH A 77 977 139 HOH HOH . I 4 HOH A 78 978 141 HOH HOH . I 4 HOH A 79 979 150 HOH HOH . I 4 HOH A 80 980 80 HOH HOH . I 4 HOH A 81 981 239 HOH HOH . I 4 HOH A 82 982 122 HOH HOH . I 4 HOH A 83 983 161 HOH HOH . I 4 HOH A 84 984 274 HOH HOH . I 4 HOH A 85 985 265 HOH HOH . I 4 HOH A 86 986 208 HOH HOH . I 4 HOH A 87 987 178 HOH HOH . I 4 HOH A 88 988 132 HOH HOH . I 4 HOH A 89 989 155 HOH HOH . I 4 HOH A 90 990 5 HOH HOH . I 4 HOH A 91 991 187 HOH HOH . I 4 HOH A 92 992 206 HOH HOH . I 4 HOH A 93 993 69 HOH HOH . I 4 HOH A 94 994 108 HOH HOH . I 4 HOH A 95 995 196 HOH HOH . I 4 HOH A 96 996 159 HOH HOH . I 4 HOH A 97 997 34 HOH HOH . I 4 HOH A 98 998 113 HOH HOH . I 4 HOH A 99 999 41 HOH HOH . I 4 HOH A 100 1000 203 HOH HOH . I 4 HOH A 101 1001 261 HOH HOH . I 4 HOH A 102 1002 195 HOH HOH . I 4 HOH A 103 1003 50 HOH HOH . I 4 HOH A 104 1004 130 HOH HOH . I 4 HOH A 105 1005 205 HOH HOH . I 4 HOH A 106 1006 275 HOH HOH . I 4 HOH A 107 1007 102 HOH HOH . I 4 HOH A 108 1008 242 HOH HOH . I 4 HOH A 109 1009 13 HOH HOH . I 4 HOH A 110 1010 160 HOH HOH . I 4 HOH A 111 1011 128 HOH HOH . I 4 HOH A 112 1012 126 HOH HOH . I 4 HOH A 113 1013 40 HOH HOH . I 4 HOH A 114 1014 264 HOH HOH . I 4 HOH A 115 1015 200 HOH HOH . I 4 HOH A 116 1016 250 HOH HOH . I 4 HOH A 117 1017 117 HOH HOH . I 4 HOH A 118 1018 36 HOH HOH . I 4 HOH A 119 1019 246 HOH HOH . I 4 HOH A 120 1020 111 HOH HOH . I 4 HOH A 121 1021 58 HOH HOH . I 4 HOH A 122 1022 177 HOH HOH . I 4 HOH A 123 1023 234 HOH HOH . I 4 HOH A 124 1024 165 HOH HOH . I 4 HOH A 125 1025 57 HOH HOH . I 4 HOH A 126 1026 253 HOH HOH . I 4 HOH A 127 1027 173 HOH HOH . I 4 HOH A 128 1028 45 HOH HOH . I 4 HOH A 129 1029 284 HOH HOH . I 4 HOH A 130 1030 232 HOH HOH . I 4 HOH A 131 1031 88 HOH HOH . I 4 HOH A 132 1032 237 HOH HOH . I 4 HOH A 133 1033 181 HOH HOH . I 4 HOH A 134 1034 135 HOH HOH . I 4 HOH A 135 1035 209 HOH HOH . I 4 HOH A 136 1036 87 HOH HOH . I 4 HOH A 137 1037 249 HOH HOH . I 4 HOH A 138 1038 4 HOH HOH . I 4 HOH A 139 1039 221 HOH HOH . J 4 HOH B 1 901 84 HOH HOH . J 4 HOH B 2 902 31 HOH HOH . J 4 HOH B 3 903 148 HOH HOH . J 4 HOH B 4 904 99 HOH HOH . J 4 HOH B 5 905 22 HOH HOH . J 4 HOH B 6 906 143 HOH HOH . J 4 HOH B 7 907 259 HOH HOH . J 4 HOH B 8 908 147 HOH HOH . J 4 HOH B 9 909 51 HOH HOH . J 4 HOH B 10 910 211 HOH HOH . J 4 HOH B 11 911 79 HOH HOH . J 4 HOH B 12 912 214 HOH HOH . J 4 HOH B 13 913 65 HOH HOH . J 4 HOH B 14 914 39 HOH HOH . J 4 HOH B 15 915 225 HOH HOH . J 4 HOH B 16 916 190 HOH HOH . J 4 HOH B 17 917 182 HOH HOH . J 4 HOH B 18 918 134 HOH HOH . J 4 HOH B 19 919 175 HOH HOH . J 4 HOH B 20 920 272 HOH HOH . J 4 HOH B 21 921 78 HOH HOH . J 4 HOH B 22 922 223 HOH HOH . J 4 HOH B 23 923 70 HOH HOH . J 4 HOH B 24 924 202 HOH HOH . J 4 HOH B 25 925 48 HOH HOH . J 4 HOH B 26 926 49 HOH HOH . J 4 HOH B 27 927 42 HOH HOH . J 4 HOH B 28 928 1 HOH HOH . J 4 HOH B 29 929 170 HOH HOH . J 4 HOH B 30 930 106 HOH HOH . J 4 HOH B 31 931 16 HOH HOH . J 4 HOH B 32 932 11 HOH HOH . J 4 HOH B 33 933 154 HOH HOH . J 4 HOH B 34 934 228 HOH HOH . J 4 HOH B 35 935 144 HOH HOH . J 4 HOH B 36 936 21 HOH HOH . J 4 HOH B 37 937 115 HOH HOH . J 4 HOH B 38 938 281 HOH HOH . J 4 HOH B 39 939 179 HOH HOH . J 4 HOH B 40 940 85 HOH HOH . J 4 HOH B 41 941 8 HOH HOH . J 4 HOH B 42 942 15 HOH HOH . J 4 HOH B 43 943 76 HOH HOH . J 4 HOH B 44 944 118 HOH HOH . J 4 HOH B 45 945 283 HOH HOH . J 4 HOH B 46 946 29 HOH HOH . J 4 HOH B 47 947 121 HOH HOH . J 4 HOH B 48 948 71 HOH HOH . J 4 HOH B 49 949 235 HOH HOH . J 4 HOH B 50 950 174 HOH HOH . J 4 HOH B 51 951 62 HOH HOH . J 4 HOH B 52 952 116 HOH HOH . J 4 HOH B 53 953 12 HOH HOH . J 4 HOH B 54 954 193 HOH HOH . J 4 HOH B 55 955 101 HOH HOH . J 4 HOH B 56 956 241 HOH HOH . J 4 HOH B 57 957 240 HOH HOH . J 4 HOH B 58 958 219 HOH HOH . J 4 HOH B 59 959 37 HOH HOH . J 4 HOH B 60 960 176 HOH HOH . J 4 HOH B 61 961 112 HOH HOH . J 4 HOH B 62 962 233 HOH HOH . J 4 HOH B 63 963 53 HOH HOH . J 4 HOH B 64 964 86 HOH HOH . J 4 HOH B 65 965 60 HOH HOH . J 4 HOH B 66 966 25 HOH HOH . J 4 HOH B 67 967 145 HOH HOH . J 4 HOH B 68 968 167 HOH HOH . J 4 HOH B 69 969 169 HOH HOH . J 4 HOH B 70 970 257 HOH HOH . J 4 HOH B 71 971 282 HOH HOH . J 4 HOH B 72 972 164 HOH HOH . J 4 HOH B 73 973 180 HOH HOH . J 4 HOH B 74 974 229 HOH HOH . J 4 HOH B 75 975 222 HOH HOH . J 4 HOH B 76 976 268 HOH HOH . J 4 HOH B 77 977 127 HOH HOH . J 4 HOH B 78 978 2 HOH HOH . J 4 HOH B 79 979 74 HOH HOH . J 4 HOH B 80 980 146 HOH HOH . J 4 HOH B 81 981 30 HOH HOH . J 4 HOH B 82 982 254 HOH HOH . J 4 HOH B 83 983 123 HOH HOH . J 4 HOH B 84 984 186 HOH HOH . J 4 HOH B 85 985 210 HOH HOH . J 4 HOH B 86 986 67 HOH HOH . J 4 HOH B 87 987 124 HOH HOH . J 4 HOH B 88 988 217 HOH HOH . J 4 HOH B 89 989 157 HOH HOH . J 4 HOH B 90 990 168 HOH HOH . J 4 HOH B 91 991 207 HOH HOH . J 4 HOH B 92 992 94 HOH HOH . J 4 HOH B 93 993 184 HOH HOH . J 4 HOH B 94 994 97 HOH HOH . J 4 HOH B 95 995 271 HOH HOH . J 4 HOH B 96 996 218 HOH HOH . J 4 HOH B 97 997 55 HOH HOH . J 4 HOH B 98 998 119 HOH HOH . J 4 HOH B 99 999 258 HOH HOH . J 4 HOH B 100 1000 260 HOH HOH . J 4 HOH B 101 1001 93 HOH HOH . J 4 HOH B 102 1002 23 HOH HOH . J 4 HOH B 103 1003 100 HOH HOH . J 4 HOH B 104 1004 231 HOH HOH . J 4 HOH B 105 1005 252 HOH HOH . J 4 HOH B 106 1006 105 HOH HOH . J 4 HOH B 107 1007 151 HOH HOH . J 4 HOH B 108 1008 82 HOH HOH . J 4 HOH B 109 1009 185 HOH HOH . J 4 HOH B 110 1010 109 HOH HOH . J 4 HOH B 111 1011 183 HOH HOH . J 4 HOH B 112 1012 215 HOH HOH . J 4 HOH B 113 1013 269 HOH HOH . J 4 HOH B 114 1014 270 HOH HOH . J 4 HOH B 115 1015 267 HOH HOH . J 4 HOH B 116 1016 236 HOH HOH . J 4 HOH B 117 1017 199 HOH HOH . J 4 HOH B 118 1018 149 HOH HOH . J 4 HOH B 119 1019 266 HOH HOH . J 4 HOH B 120 1020 279 HOH HOH . J 4 HOH B 121 1021 137 HOH HOH . J 4 HOH B 122 1022 245 HOH HOH . J 4 HOH B 123 1023 230 HOH HOH . J 4 HOH B 124 1024 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 I8G . B . C 2 14.439 24.286 21.218 0.71 40.83 ? N1 I8G 801 A 1 HETATM 2 C C4 I8G . B . C 2 12.694 21.49 24.621 0.71 38.47 ? C4 I8G 801 A 1 HETATM 3 C C5 I8G . B . C 2 13.924 22.559 22.865 0.71 40.11 ? C5 I8G 801 A 1 HETATM 4 C C6 I8G . B . C 2 13.62 23.29 21.6 0.71 40.99 ? C6 I8G 801 A 1 HETATM 5 C C7 I8G . B . C 2 15.545 24.875 22 0.71 40.32 ? C7 I8G 801 A 1 HETATM 6 C C8 I8G . B . C 2 16.208 25.806 21.013 0.71 40.39 ? C8 I8G 801 A 1 HETATM 7 C C10 I8G . B . C 2 14.305 24.963 19.919 0.71 40.82 ? C10 I8G 801 A 1 HETATM 8 F F1 I8G . B . C 2 12.241 20.347 28.516 0.71 38.77 ? F1 I8G 801 A 1 HETATM 9 C C1 I8G . B . C 2 12.394 20.728 27.216 0.71 38.51 ? C1 I8G 801 A 1 HETATM 10 C C2 I8G . B . C 2 11.526 20.232 26.287 0.71 38.29 ? C2 I8G 801 A 1 HETATM 11 C C3 I8G . B . C 2 11.647 20.654 24.975 0.71 38.09 ? C3 I8G 801 A 1 HETATM 12 O O1 I8G . B . C 2 12.757 21.882 23.31 0.71 39.46 ? O1 I8G 801 A 1 HETATM 13 O O2 I8G . B . C 2 12.598 23.038 20.961 0.71 41.95 ? O2 I8G 801 A 1 HETATM 14 C C9 I8G . B . C 2 15.065 26.249 20.153 0.71 40.92 ? C9 I8G 801 A 1 HETATM 15 C C11 I8G . B . C 2 13.564 21.979 25.59 0.71 38.11 ? C11 I8G 801 A 1 HETATM 16 C C12 I8G . B . C 2 13.433 21.557 26.899 0.71 38.14 ? C12 I8G 801 A 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #