data_5SEE # _model_server_result.job_id Y_Q8P1eEzW9JZLRhVmTuYA _model_server_result.datetime_utc '2024-10-11 02:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5see # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 5SEE # _exptl.entry_id 5SEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.421 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-cyclopropyl-N-[1-(pyridin-2-yl)-1H-pyrazol-5-yl]-3-[(pyrimidin-5-yl)amino]pyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SEE _cell.length_a 142.94 _cell.length_b 142.94 _cell.length_c 142.94 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 498 1_555 A SG CYS 56 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A C LEU 62 A LEU 508 1_555 A N CME 63 A CME 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C CME 63 A CME 509 1_555 A N ARG 64 A ARG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 83 A HIS 529 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc2 A NE2 HIS 117 A HIS 563 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 A OD2 ASP 118 A ASP 564 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 A OD1 ASP 118 A ASP 564 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc5 A OD1 ASP 228 A ASP 674 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc6 B ZN ZN . A ZN 801 1_555 F O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc7 C MG MG . A MG 802 1_555 F O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 C MG MG . A MG 802 1_555 F O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc9 C MG MG . A MG 802 1_555 F O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc10 C MG MG . A MG 802 1_555 F O HOH . A HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 C MG MG . A MG 802 1_555 F O HOH . A HOH 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C21 H18 N8 O' _chem_comp.formula_weight 398.421 _chem_comp.id IEN _chem_comp.mon_nstd_flag . _chem_comp.name 6-cyclopropyl-N-[1-(pyridin-2-yl)-1H-pyrazol-5-yl]-3-[(pyrimidin-5-yl)amino]pyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C9 IEN doub 173 n y C1 N6 IEN sing 174 n n C1 N2 IEN sing 175 n y N2 N7 IEN sing 176 n y N2 C11 IEN sing 177 n n C3 C8 IEN doub 178 n y C3 N4 IEN sing 179 n y C3 C5 IEN sing 180 n n N4 C10 IEN doub 181 n y C5 O18 IEN doub 182 n n C5 N6 IEN sing 183 n n N7 C16 IEN doub 184 n y C8 C21 IEN sing 185 n y C8 N13 IEN sing 186 n n C9 C16 IEN sing 187 n y C10 C12 IEN sing 188 n n C10 C23 IEN sing 189 n y C11 C27 IEN doub 190 n y C11 N17 IEN sing 191 n y C12 C14 IEN sing 192 n n C12 C15 IEN sing 193 n n N13 C22 IEN sing 194 n n C14 C15 IEN sing 195 n n N17 C28 IEN doub 196 n y N19 C25 IEN doub 197 n y N19 C24 IEN sing 198 n y N20 C24 IEN doub 199 n y N20 C26 IEN sing 200 n y C21 C23 IEN doub 201 n y C22 C25 IEN sing 202 n y C22 C26 IEN doub 203 n y C27 C29 IEN sing 204 n y C28 C30 IEN sing 205 n y C29 C30 IEN doub 206 n y C15 H38 IEN sing 207 n n C15 H37 IEN sing 208 n n C16 H39 IEN sing 209 n n C21 H40 IEN sing 210 n n C23 H41 IEN sing 211 n n C24 H42 IEN sing 212 n n C25 H43 IEN sing 213 n n C26 H44 IEN sing 214 n n C27 H45 IEN sing 215 n n C28 H46 IEN sing 216 n n N6 H31 IEN sing 217 n n C9 H32 IEN sing 218 n n C12 H33 IEN sing 219 n n N13 H34 IEN sing 220 n n C14 H35 IEN sing 221 n n C14 H36 IEN sing 222 n n C29 H47 IEN sing 223 n n C30 H48 IEN sing 224 n n # _atom_sites.entry_id 5SEE _atom_sites.fract_transf_matrix[1][1] 0.006996 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 MG A 1 802 2 MG MG . D 4 CL A 1 803 3 CL CL . E 5 IEN A 1 804 1 IEN L0R . F 6 HOH A 1 901 19 HOH HOH . F 6 HOH A 2 902 15 HOH HOH . F 6 HOH A 3 903 16 HOH HOH . F 6 HOH A 4 904 9 HOH HOH . F 6 HOH A 5 905 4 HOH HOH . F 6 HOH A 6 906 12 HOH HOH . F 6 HOH A 7 907 1 HOH HOH . F 6 HOH A 8 908 23 HOH HOH . F 6 HOH A 9 909 5 HOH HOH . F 6 HOH A 10 910 10 HOH HOH . F 6 HOH A 11 911 18 HOH HOH . F 6 HOH A 12 912 20 HOH HOH . F 6 HOH A 13 913 8 HOH HOH . F 6 HOH A 14 914 7 HOH HOH . F 6 HOH A 15 915 17 HOH HOH . F 6 HOH A 16 916 14 HOH HOH . F 6 HOH A 17 917 11 HOH HOH . F 6 HOH A 18 918 2 HOH HOH . F 6 HOH A 19 919 3 HOH HOH . F 6 HOH A 20 920 13 HOH HOH . F 6 HOH A 21 921 21 HOH HOH . F 6 HOH A 22 922 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 IEN . . . E 5 34.795 35.558 61.976 1 61.56 ? C10 IEN 804 A 1 HETATM 2 C C11 IEN . . . E 5 33.361 29.748 60.701 1 70.97 ? C11 IEN 804 A 1 HETATM 3 C C15 IEN . . . E 5 37.101 34.586 62.645 1 76.39 ? C15 IEN 804 A 1 HETATM 4 C C16 IEN . . . E 5 32.678 29.961 57.287 1 64.4 ? C16 IEN 804 A 1 HETATM 5 C C21 IEN . . . E 5 33.484 37.237 60.893 1 49.67 ? C21 IEN 804 A 1 HETATM 6 C C22 IEN . . . E 5 31.668 37.788 58.422 1 57.08 ? C22 IEN 804 A 1 HETATM 7 C C23 IEN . . . E 5 34.351 36.871 61.906 1 50.97 ? C23 IEN 804 A 1 HETATM 8 C C24 IEN . . . E 5 30.683 40.096 57.461 1 58.97 ? C24 IEN 804 A 1 HETATM 9 C C25 IEN . . . E 5 30.563 37.844 57.574 1 53.42 ? C25 IEN 804 A 1 HETATM 10 C C26 IEN . . . E 5 32.242 39.023 58.717 1 58.05 ? C26 IEN 804 A 1 HETATM 11 C C27 IEN . . . E 5 32.706 28.579 61.182 1 78.51 ? C27 IEN 804 A 1 HETATM 12 C C28 IEN . . . E 5 34.55 29.977 62.661 1 73.78 ? C28 IEN 804 A 1 HETATM 13 C C1 IEN . . . E 5 33.263 31.453 58.803 1 58.71 ? C1 IEN 804 A 1 HETATM 14 N N2 IEN . . . E 5 33.123 30.223 59.372 1 69.67 ? N2 IEN 804 A 1 HETATM 15 C C3 IEN . . . E 5 33.563 34.963 60.113 1 56.41 ? C3 IEN 804 A 1 HETATM 16 N N4 IEN . . . E 5 34.423 34.623 61.086 1 56.79 ? N4 IEN 804 A 1 HETATM 17 C C5 IEN . . . E 5 33.144 33.856 59.184 1 57.17 ? C5 IEN 804 A 1 HETATM 18 N N6 IEN . . . E 5 33.594 32.583 59.53 1 56.72 ? N6 IEN 804 A 1 HETATM 19 N N7 IEN . . . E 5 32.768 29.273 58.423 1 77.08 ? N7 IEN 804 A 1 HETATM 20 C C8 IEN . . . E 5 33.083 36.289 59.954 1 50.33 ? C8 IEN 804 A 1 HETATM 21 C C9 IEN . . . E 5 32.955 31.318 57.463 1 67.91 ? C9 IEN 804 A 1 HETATM 22 C C12 IEN . . . E 5 35.758 35.128 63.065 1 71.04 ? C12 IEN 804 A 1 HETATM 23 N N13 IEN . . . E 5 32.165 36.55 58.907 1 54.32 ? N13 IEN 804 A 1 HETATM 24 C C14 IEN . . . E 5 36.13 33.69 63.312 1 69.33 ? C14 IEN 804 A 1 HETATM 25 N N17 IEN . . . E 5 34.279 30.433 61.42 1 66.94 ? N17 IEN 804 A 1 HETATM 26 O O18 IEN . . . E 5 32.482 34.106 58.181 1 51.84 ? O18 IEN 804 A 1 HETATM 27 N N19 IEN . . . E 5 30.044 38.992 57.101 1 50.56 ? N19 IEN 804 A 1 HETATM 28 N N20 IEN . . . E 5 31.759 40.181 58.254 1 63.32 ? N20 IEN 804 A 1 HETATM 29 C C29 IEN . . . E 5 33.021 28.147 62.469 1 76.86 ? C29 IEN 804 A 1 HETATM 30 C C30 IEN . . . E 5 33.961 28.843 63.224 1 69.02 ? C30 IEN 804 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #