data_5SG4 # _model_server_result.job_id W728LbAPJlmMR5mNEkqI4w _model_server_result.datetime_utc '2024-10-10 10:21:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 5SG4 # _exptl.entry_id 5SG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.814 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~5~-[2-(3-chlorophenyl)-1H-benzimidazol-5-yl]-1-methyl-1H-pyrazole-4,5-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SG4 _cell.length_a 141.516 _cell.length_b 141.516 _cell.length_c 141.516 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 498 1_555 A SG CYS 56 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? covale ? covale1 A C LEU 62 A LEU 508 1_555 A N CME 63 A CME 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CME 63 A CME 509 1_555 A N ARG 64 A ARG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 83 A HIS 529 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 A NE2 HIS 117 A HIS 563 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 A OD2 ASP 118 A ASP 564 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 A OD1 ASP 118 A ASP 564 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc5 A OD1 ASP 228 A ASP 674 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc6 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc7 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc8 C MG MG . A MG 802 1_555 E O HOH . A HOH 927 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc9 C MG MG . A MG 802 1_555 E O HOH . A HOH 968 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc10 C MG MG . A MG 802 1_555 E O HOH . A HOH 970 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 C MG MG . A MG 802 1_555 E O HOH . A HOH 978 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 C MG MG . A MG 802 1_555 E O HOH . A HOH 987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? # _chem_comp.formula 'C19 H15 Cl N6 O2' _chem_comp.formula_weight 394.814 _chem_comp.id IVJ _chem_comp.mon_nstd_flag . _chem_comp.name N~5~-[2-(3-chlorophenyl)-1H-benzimidazol-5-yl]-1-methyl-1H-pyrazole-4,5-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IVJ sing 194 n n N1 C22 IVJ sing 195 n n C2 O3 IVJ doub 196 n n C2 C6 IVJ sing 197 n n C4 N15 IVJ sing 198 n y C4 N14 IVJ doub 199 n y C4 C18 IVJ sing 200 n n N5 C6 IVJ sing 201 n y N5 N9 IVJ sing 202 n y N5 C10 IVJ sing 203 n n C6 C7 IVJ doub 204 n y C7 C8 IVJ sing 205 n y C7 C11 IVJ sing 206 n n C8 N9 IVJ doub 207 n y C11 O12 IVJ doub 208 n n C11 N13 IVJ sing 209 n n N14 C16 IVJ sing 210 n y N15 C17 IVJ sing 211 n y C16 C19 IVJ doub 212 n y C16 C17 IVJ sing 213 n y C17 C21 IVJ doub 214 n y C18 C26 IVJ doub 215 n y C18 C20 IVJ sing 216 n y C19 C22 IVJ sing 217 n y C20 C23 IVJ doub 218 n y C21 C24 IVJ sing 219 n y C22 C24 IVJ doub 220 n y C23 C28 IVJ sing 221 n y C23 CL25 IVJ sing 222 n n C26 C27 IVJ sing 223 n y C27 C28 IVJ doub 224 n y N1 H29 IVJ sing 225 n n C8 H30 IVJ sing 226 n n C10 H31 IVJ sing 227 n n C10 H32 IVJ sing 228 n n C10 H33 IVJ sing 229 n n C20 H38 IVJ sing 230 n n C21 H39 IVJ sing 231 n n C24 H40 IVJ sing 232 n n C26 H41 IVJ sing 233 n n C28 H43 IVJ sing 234 n n N13 H35 IVJ sing 235 n n N13 H34 IVJ sing 236 n n N15 H36 IVJ sing 237 n n C19 H37 IVJ sing 238 n n C27 H42 IVJ sing 239 n n # _atom_sites.entry_id 5SG4 _atom_sites.fract_transf_matrix[1][1] 0.007066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 MG A 1 802 2 MG MG . D 4 IVJ A 1 803 1 IVJ LIG . E 5 HOH A 1 901 99 HOH HOH . E 5 HOH A 2 902 56 HOH HOH . E 5 HOH A 3 903 16 HOH HOH . E 5 HOH A 4 904 125 HOH HOH . E 5 HOH A 5 905 104 HOH HOH . E 5 HOH A 6 906 147 HOH HOH . E 5 HOH A 7 907 52 HOH HOH . E 5 HOH A 8 908 14 HOH HOH . E 5 HOH A 9 909 47 HOH HOH . E 5 HOH A 10 910 64 HOH HOH . E 5 HOH A 11 911 118 HOH HOH . E 5 HOH A 12 912 46 HOH HOH . E 5 HOH A 13 913 85 HOH HOH . E 5 HOH A 14 914 165 HOH HOH . E 5 HOH A 15 915 153 HOH HOH . E 5 HOH A 16 916 135 HOH HOH . E 5 HOH A 17 917 33 HOH HOH . E 5 HOH A 18 918 43 HOH HOH . E 5 HOH A 19 919 34 HOH HOH . E 5 HOH A 20 920 25 HOH HOH . E 5 HOH A 21 921 150 HOH HOH . E 5 HOH A 22 922 24 HOH HOH . E 5 HOH A 23 923 35 HOH HOH . E 5 HOH A 24 924 20 HOH HOH . E 5 HOH A 25 925 66 HOH HOH . E 5 HOH A 26 926 11 HOH HOH . E 5 HOH A 27 927 41 HOH HOH . E 5 HOH A 28 928 29 HOH HOH . E 5 HOH A 29 929 55 HOH HOH . E 5 HOH A 30 930 12 HOH HOH . E 5 HOH A 31 931 69 HOH HOH . E 5 HOH A 32 932 38 HOH HOH . E 5 HOH A 33 933 87 HOH HOH . E 5 HOH A 34 934 103 HOH HOH . E 5 HOH A 35 935 54 HOH HOH . E 5 HOH A 36 936 7 HOH HOH . E 5 HOH A 37 937 21 HOH HOH . E 5 HOH A 38 938 22 HOH HOH . E 5 HOH A 39 939 187 HOH HOH . E 5 HOH A 40 940 96 HOH HOH . E 5 HOH A 41 941 18 HOH HOH . E 5 HOH A 42 942 3 HOH HOH . E 5 HOH A 43 943 63 HOH HOH . E 5 HOH A 44 944 23 HOH HOH . E 5 HOH A 45 945 80 HOH HOH . E 5 HOH A 46 946 10 HOH HOH . E 5 HOH A 47 947 112 HOH HOH . E 5 HOH A 48 948 9 HOH HOH . E 5 HOH A 49 949 127 HOH HOH . E 5 HOH A 50 950 81 HOH HOH . E 5 HOH A 51 951 6 HOH HOH . E 5 HOH A 52 952 88 HOH HOH . E 5 HOH A 53 953 72 HOH HOH . E 5 HOH A 54 954 36 HOH HOH . E 5 HOH A 55 955 166 HOH HOH . E 5 HOH A 56 956 59 HOH HOH . E 5 HOH A 57 957 114 HOH HOH . E 5 HOH A 58 958 28 HOH HOH . E 5 HOH A 59 959 37 HOH HOH . E 5 HOH A 60 960 102 HOH HOH . E 5 HOH A 61 961 8 HOH HOH . E 5 HOH A 62 962 167 HOH HOH . E 5 HOH A 63 963 65 HOH HOH . E 5 HOH A 64 964 91 HOH HOH . E 5 HOH A 65 965 122 HOH HOH . E 5 HOH A 66 966 73 HOH HOH . E 5 HOH A 67 967 144 HOH HOH . E 5 HOH A 68 968 2 HOH HOH . E 5 HOH A 69 969 82 HOH HOH . E 5 HOH A 70 970 5 HOH HOH . E 5 HOH A 71 971 32 HOH HOH . E 5 HOH A 72 972 98 HOH HOH . E 5 HOH A 73 973 42 HOH HOH . E 5 HOH A 74 974 136 HOH HOH . E 5 HOH A 75 975 45 HOH HOH . E 5 HOH A 76 976 39 HOH HOH . E 5 HOH A 77 977 4 HOH HOH . E 5 HOH A 78 978 17 HOH HOH . E 5 HOH A 79 979 105 HOH HOH . E 5 HOH A 80 980 57 HOH HOH . E 5 HOH A 81 981 13 HOH HOH . E 5 HOH A 82 982 48 HOH HOH . E 5 HOH A 83 983 62 HOH HOH . E 5 HOH A 84 984 77 HOH HOH . E 5 HOH A 85 985 60 HOH HOH . E 5 HOH A 86 986 97 HOH HOH . E 5 HOH A 87 987 1 HOH HOH . E 5 HOH A 88 988 207 HOH HOH . E 5 HOH A 89 989 142 HOH HOH . E 5 HOH A 90 990 49 HOH HOH . E 5 HOH A 91 991 19 HOH HOH . E 5 HOH A 92 992 26 HOH HOH . E 5 HOH A 93 993 31 HOH HOH . E 5 HOH A 94 994 110 HOH HOH . E 5 HOH A 95 995 117 HOH HOH . E 5 HOH A 96 996 51 HOH HOH . E 5 HOH A 97 997 158 HOH HOH . E 5 HOH A 98 998 160 HOH HOH . E 5 HOH A 99 999 53 HOH HOH . E 5 HOH A 100 1000 15 HOH HOH . E 5 HOH A 101 1001 107 HOH HOH . E 5 HOH A 102 1002 170 HOH HOH . E 5 HOH A 103 1003 92 HOH HOH . E 5 HOH A 104 1004 61 HOH HOH . E 5 HOH A 105 1005 71 HOH HOH . E 5 HOH A 106 1006 40 HOH HOH . E 5 HOH A 107 1007 123 HOH HOH . E 5 HOH A 108 1008 176 HOH HOH . E 5 HOH A 109 1009 74 HOH HOH . E 5 HOH A 110 1010 133 HOH HOH . E 5 HOH A 111 1011 108 HOH HOH . E 5 HOH A 112 1012 67 HOH HOH . E 5 HOH A 113 1013 137 HOH HOH . E 5 HOH A 114 1014 70 HOH HOH . E 5 HOH A 115 1015 93 HOH HOH . E 5 HOH A 116 1016 182 HOH HOH . E 5 HOH A 117 1017 111 HOH HOH . E 5 HOH A 118 1018 78 HOH HOH . E 5 HOH A 119 1019 84 HOH HOH . E 5 HOH A 120 1020 58 HOH HOH . E 5 HOH A 121 1021 27 HOH HOH . E 5 HOH A 122 1022 168 HOH HOH . E 5 HOH A 123 1023 68 HOH HOH . E 5 HOH A 124 1024 100 HOH HOH . E 5 HOH A 125 1025 131 HOH HOH . E 5 HOH A 126 1026 113 HOH HOH . E 5 HOH A 127 1027 211 HOH HOH . E 5 HOH A 128 1028 146 HOH HOH . E 5 HOH A 129 1029 76 HOH HOH . E 5 HOH A 130 1030 195 HOH HOH . E 5 HOH A 131 1031 139 HOH HOH . E 5 HOH A 132 1032 181 HOH HOH . E 5 HOH A 133 1033 89 HOH HOH . E 5 HOH A 134 1034 44 HOH HOH . E 5 HOH A 135 1035 95 HOH HOH . E 5 HOH A 136 1036 132 HOH HOH . E 5 HOH A 137 1037 138 HOH HOH . E 5 HOH A 138 1038 189 HOH HOH . E 5 HOH A 139 1039 177 HOH HOH . E 5 HOH A 140 1040 79 HOH HOH . E 5 HOH A 141 1041 130 HOH HOH . E 5 HOH A 142 1042 86 HOH HOH . E 5 HOH A 143 1043 196 HOH HOH . E 5 HOH A 144 1044 30 HOH HOH . E 5 HOH A 145 1045 164 HOH HOH . E 5 HOH A 146 1046 154 HOH HOH . E 5 HOH A 147 1047 50 HOH HOH . E 5 HOH A 148 1048 129 HOH HOH . E 5 HOH A 149 1049 157 HOH HOH . E 5 HOH A 150 1050 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IVJ . . . D 4 33.328 109.209 59.296 1 44.1 ? N1 IVJ 803 A 1 HETATM 2 C C4 IVJ . . . D 4 28.733 109.575 55.664 1 48.83 ? C4 IVJ 803 A 1 HETATM 3 C C6 IVJ . . . D 4 35.615 109.523 59.769 1 43.23 ? C6 IVJ 803 A 1 HETATM 4 C C7 IVJ . . . D 4 35.917 108.768 60.959 1 43.32 ? C7 IVJ 803 A 1 HETATM 5 C C8 IVJ . . . D 4 37.199 109.203 61.323 1 53.03 ? C8 IVJ 803 A 1 HETATM 6 C C10 IVJ . . . D 4 36.903 111.31 58.499 1 46.17 ? C10 IVJ 803 A 1 HETATM 7 C C17 IVJ . . . D 4 29.497 109.445 57.723 1 45.54 ? C17 IVJ 803 A 1 HETATM 8 C C20 IVJ . . . D 4 28.114 109.222 53.296 1 46.4 ? C20 IVJ 803 A 1 HETATM 9 C C21 IVJ . . . D 4 29.687 109.38 59.088 1 46.06 ? C21 IVJ 803 A 1 HETATM 10 C C22 IVJ . . . D 4 32.065 109.317 58.679 1 42.98 ? C22 IVJ 803 A 1 HETATM 11 C C24 IVJ . . . D 4 30.983 109.284 59.554 1 49.93 ? C24 IVJ 803 A 1 HETATM 12 C C26 IVJ . . . D 4 26.413 109.922 54.838 1 61.56 ? C26 IVJ 803 A 1 HETATM 13 C C28 IVJ . . . D 4 25.84 109.54 52.547 1 51.86 ? C28 IVJ 803 A 1 HETATM 14 C C2 IVJ . . . D 4 34.5 109.595 58.822 1 44.36 ? C2 IVJ 803 A 1 HETATM 15 O O3 IVJ . . . D 4 34.673 110.001 57.67 1 41.51 ? O3 IVJ 803 A 1 HETATM 16 N N5 IVJ . . . D 4 36.685 110.325 59.555 1 41.85 ? N5 IVJ 803 A 1 HETATM 17 N N9 IVJ . . . D 4 37.67 110.144 60.501 1 43.83 ? N9 IVJ 803 A 1 HETATM 18 C C11 IVJ . . . D 4 35.067 107.734 61.626 1 49.35 ? C11 IVJ 803 A 1 HETATM 19 O O12 IVJ . . . D 4 33.843 107.782 61.436 1 46.27 ? O12 IVJ 803 A 1 HETATM 20 N N13 IVJ . . . D 4 35.655 106.797 62.378 1 52.62 ? N13 IVJ 803 A 1 HETATM 21 N N14 IVJ . . . D 4 30.055 109.516 55.511 1 41.96 ? N14 IVJ 803 A 1 HETATM 22 N N15 IVJ . . . D 4 28.354 109.526 56.972 1 48.34 ? N15 IVJ 803 A 1 HETATM 23 C C16 IVJ . . . D 4 30.559 109.424 56.82 1 45.59 ? C16 IVJ 803 A 1 HETATM 24 C C18 IVJ . . . D 4 27.747 109.603 54.575 1 50.89 ? C18 IVJ 803 A 1 HETATM 25 C C19 IVJ . . . D 4 31.865 109.374 57.305 1 44.19 ? C19 IVJ 803 A 1 HETATM 26 C C23 IVJ . . . D 4 27.155 109.212 52.307 1 54.78 ? C23 IVJ 803 A 1 HETATM 27 CL CL25 IVJ . . . D 4 27.622 108.747 50.713 1 98.31 ? CL25 IVJ 803 A 1 HETATM 28 C C27 IVJ . . . D 4 25.477 109.923 53.819 1 63.33 ? C27 IVJ 803 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #