data_5SHY # _model_server_result.job_id Xr_oO9mOhu1sxzqbv_eh0g _model_server_result.datetime_utc '2024-11-30 04:55:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5shy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":807}' # _entry.id 5SHY # _exptl.entry_id 5SHY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.41 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {8-[(2-methyl-1,3-thiazol-4-yl)amino]-5-(pyridin-3-yl)-1,7-naphthyridin-2-yl}methanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SHY _cell.length_a 142.08 _cell.length_b 142.08 _cell.length_c 142.08 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SHY _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 498 1_555 A SG CYS 56 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? covale ? covale1 A C LEU 62 A LEU 508 1_555 A N CME 63 A CME 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C CME 63 A CME 509 1_555 A N ARG 64 A ARG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A NE2 HIS 83 A HIS 529 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 A NE2 HIS 117 A HIS 563 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc3 A OD2 ASP 118 A ASP 564 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 A OD1 ASP 118 A ASP 564 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc5 A OD1 ASP 228 A ASP 674 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc6 A OD2 ASP 228 A ASP 674 1_555 D K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.396 ? metalc ? metalc7 B ZN ZN . A ZN 801 1_555 I O HOH . A HOH 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 C MG MG . A MG 802 1_555 I O HOH . A HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc9 C MG MG . A MG 802 1_555 I O HOH . A HOH 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc10 C MG MG . A MG 802 1_555 I O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc11 C MG MG . A MG 802 1_555 I O HOH . A HOH 954 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc12 C MG MG . A MG 802 1_555 I O HOH . A HOH 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc13 D K K . A K 803 1_555 I O HOH . A HOH 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc14 D K K . A K 803 1_555 I O HOH . A HOH 926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? metalc ? metalc15 D K K . A K 803 1_555 I O HOH . A HOH 933 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc16 D K K . A K 803 1_555 I O HOH . A HOH 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C18 H15 N5 O S' _chem_comp.formula_weight 349.41 _chem_comp.id JJR _chem_comp.mon_nstd_flag . _chem_comp.name {8-[(2-methyl-1,3-thiazol-4-yl)amino]-5-(pyridin-3-yl)-1,7-naphthyridin-2-yl}methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C3 JJR sing 194 n y N1 C10 JJR doub 195 n y C2 N7 JJR doub 196 n y C2 C4 JJR sing 197 n y C2 N6 JJR sing 198 n n C3 N6 JJR sing 199 n n C3 C13 JJR doub 200 n y C4 C5 JJR doub 201 n y C4 N8 JJR sing 202 n y C5 C14 JJR sing 203 n y C5 C9 JJR sing 204 n y N7 C12 JJR sing 205 n y N8 C17 JJR doub 206 n y C9 C15 JJR sing 207 n n C9 C12 JJR doub 208 n y C10 S11 JJR sing 209 n y C10 C21 JJR sing 210 n n S11 C13 JJR sing 211 n y C14 C18 JJR doub 212 n y C15 C24 JJR doub 213 n y C15 C19 JJR sing 214 n y N16 C22 JJR sing 215 n y N16 C19 JJR doub 216 n y C17 C23 JJR sing 217 n n C17 C18 JJR sing 218 n y O20 C23 JJR sing 219 n n C22 C25 JJR doub 220 n y C24 C25 JJR sing 221 n y C13 H28 JJR sing 222 n n C18 H30 JJR sing 223 n n C19 H31 JJR sing 224 n n C21 H35 JJR sing 225 n n C21 H33 JJR sing 226 n n C21 H34 JJR sing 227 n n C22 H36 JJR sing 228 n n C23 H38 JJR sing 229 n n C23 H37 JJR sing 230 n n C24 H39 JJR sing 231 n n C25 H40 JJR sing 232 n n N6 H26 JJR sing 233 n n C12 H27 JJR sing 234 n n C14 H29 JJR sing 235 n n O20 H32 JJR sing 236 n n # _atom_sites.entry_id 5SHY _atom_sites.fract_transf_matrix[1][1] 0.007038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 MG A 1 802 1 MG MG . D 4 K A 1 803 1 K K . E 5 CL A 1 804 1 CL CL . F 5 CL A 1 805 2 CL CL . G 5 CL A 1 806 3 CL CL . H 6 JJR A 1 807 1 JJR L0R . I 7 HOH A 1 901 43 HOH HOH . I 7 HOH A 2 902 53 HOH HOH . I 7 HOH A 3 903 65 HOH HOH . I 7 HOH A 4 904 34 HOH HOH . I 7 HOH A 5 905 19 HOH HOH . I 7 HOH A 6 906 10 HOH HOH . I 7 HOH A 7 907 73 HOH HOH . I 7 HOH A 8 908 44 HOH HOH . I 7 HOH A 9 909 5 HOH HOH . I 7 HOH A 10 910 63 HOH HOH . I 7 HOH A 11 911 41 HOH HOH . I 7 HOH A 12 912 29 HOH HOH . I 7 HOH A 13 913 50 HOH HOH . I 7 HOH A 14 914 27 HOH HOH . I 7 HOH A 15 915 83 HOH HOH . I 7 HOH A 16 916 45 HOH HOH . I 7 HOH A 17 917 35 HOH HOH . I 7 HOH A 18 918 56 HOH HOH . I 7 HOH A 19 919 46 HOH HOH . I 7 HOH A 20 920 15 HOH HOH . I 7 HOH A 21 921 9 HOH HOH . I 7 HOH A 22 922 42 HOH HOH . I 7 HOH A 23 923 48 HOH HOH . I 7 HOH A 24 924 71 HOH HOH . I 7 HOH A 25 925 64 HOH HOH . I 7 HOH A 26 926 14 HOH HOH . I 7 HOH A 27 927 26 HOH HOH . I 7 HOH A 28 928 77 HOH HOH . I 7 HOH A 29 929 21 HOH HOH . I 7 HOH A 30 930 66 HOH HOH . I 7 HOH A 31 931 31 HOH HOH . I 7 HOH A 32 932 22 HOH HOH . I 7 HOH A 33 933 1 HOH HOH . I 7 HOH A 34 934 54 HOH HOH . I 7 HOH A 35 935 37 HOH HOH . I 7 HOH A 36 936 17 HOH HOH . I 7 HOH A 37 937 40 HOH HOH . I 7 HOH A 38 938 4 HOH HOH . I 7 HOH A 39 939 7 HOH HOH . I 7 HOH A 40 940 51 HOH HOH . I 7 HOH A 41 941 8 HOH HOH . I 7 HOH A 42 942 47 HOH HOH . I 7 HOH A 43 943 11 HOH HOH . I 7 HOH A 44 944 13 HOH HOH . I 7 HOH A 45 945 28 HOH HOH . I 7 HOH A 46 946 36 HOH HOH . I 7 HOH A 47 947 25 HOH HOH . I 7 HOH A 48 948 52 HOH HOH . I 7 HOH A 49 949 16 HOH HOH . I 7 HOH A 50 950 12 HOH HOH . I 7 HOH A 51 951 39 HOH HOH . I 7 HOH A 52 952 57 HOH HOH . I 7 HOH A 53 953 24 HOH HOH . I 7 HOH A 54 954 2 HOH HOH . I 7 HOH A 55 955 78 HOH HOH . I 7 HOH A 56 956 18 HOH HOH . I 7 HOH A 57 957 62 HOH HOH . I 7 HOH A 58 958 74 HOH HOH . I 7 HOH A 59 959 30 HOH HOH . I 7 HOH A 60 960 49 HOH HOH . I 7 HOH A 61 961 58 HOH HOH . I 7 HOH A 62 962 20 HOH HOH . I 7 HOH A 63 963 70 HOH HOH . I 7 HOH A 64 964 23 HOH HOH . I 7 HOH A 65 965 76 HOH HOH . I 7 HOH A 66 966 55 HOH HOH . I 7 HOH A 67 967 84 HOH HOH . I 7 HOH A 68 968 32 HOH HOH . I 7 HOH A 69 969 79 HOH HOH . I 7 HOH A 70 970 33 HOH HOH . I 7 HOH A 71 971 72 HOH HOH . I 7 HOH A 72 972 61 HOH HOH . I 7 HOH A 73 973 3 HOH HOH . I 7 HOH A 74 974 81 HOH HOH . I 7 HOH A 75 975 60 HOH HOH . I 7 HOH A 76 976 69 HOH HOH . I 7 HOH A 77 977 38 HOH HOH . I 7 HOH A 78 978 68 HOH HOH . I 7 HOH A 79 979 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JJR . . . H 6 41.851 129.733 38.653 1 63.01 ? C10 JJR 807 A 1 HETATM 2 C C13 JJR . . . H 6 39.754 128.501 38.525 1 54.24 ? C13 JJR 807 A 1 HETATM 3 C C15 JJR . . . H 6 33.389 129.21 39.799 1 53.26 ? C15 JJR 807 A 1 HETATM 4 C C17 JJR . . . H 6 35.461 133.133 37.102 1 49.61 ? C17 JJR 807 A 1 HETATM 5 C C18 JJR . . . H 6 34.163 132.917 37.553 1 50.1 ? C18 JJR 807 A 1 HETATM 6 C C19 JJR . . . H 6 33.232 128.607 41.045 1 53.53 ? C19 JJR 807 A 1 HETATM 7 C C21 JJR . . . H 6 43.268 130.179 38.811 1 66.94 ? C21 JJR 807 A 1 HETATM 8 C C22 JJR . . . H 6 30.982 128.281 40.756 1 50.96 ? C22 JJR 807 A 1 HETATM 9 C C23 JJR . . . H 6 35.853 134.363 36.329 1 59.17 ? C23 JJR 807 A 1 HETATM 10 C C24 JJR . . . H 6 32.246 129.287 38.996 1 54.95 ? C24 JJR 807 A 1 HETATM 11 C C25 JJR . . . H 6 31.023 128.851 39.491 1 54.37 ? C25 JJR 807 A 1 HETATM 12 N N1 JJR . . . H 6 40.87 130.523 38.324 1 61.69 ? N1 JJR 807 A 1 HETATM 13 C C2 JJR . . . H 6 37.276 130.238 38.35 1 48.32 ? C2 JJR 807 A 1 HETATM 14 C C3 JJR . . . H 6 39.689 129.847 38.232 1 56.19 ? C3 JJR 807 A 1 HETATM 15 C C4 JJR . . . H 6 36.204 131.161 38.056 1 44.06 ? C4 JJR 807 A 1 HETATM 16 C C5 JJR . . . H 6 34.909 130.843 38.546 1 45.56 ? C5 JJR 807 A 1 HETATM 17 N N6 JJR . . . H 6 38.521 130.499 37.9 1 52.32 ? N6 JJR 807 A 1 HETATM 18 N N7 JJR . . . H 6 37.041 129.097 39.022 1 49.6 ? N7 JJR 807 A 1 HETATM 19 N N8 JJR . . . H 6 36.452 132.286 37.328 1 45.47 ? N8 JJR 807 A 1 HETATM 20 C C9 JJR . . . H 6 34.726 129.642 39.288 1 51.43 ? C9 JJR 807 A 1 HETATM 21 S S11 JJR . . . H 6 41.382 128.084 38.896 1 60.71 ? S11 JJR 807 A 1 HETATM 22 C C12 JJR . . . H 6 35.804 128.822 39.467 1 49.68 ? C12 JJR 807 A 1 HETATM 23 C C14 JJR . . . H 6 33.885 131.792 38.273 1 52.75 ? C14 JJR 807 A 1 HETATM 24 N N16 JJR . . . H 6 32.058 128.159 41.537 1 50.44 ? N16 JJR 807 A 1 HETATM 25 O O20 JJR . . . H 6 36.558 134.066 35.144 1 64 ? O20 JJR 807 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #