data_5SIL # _model_server_result.job_id W4UgdFI1YukO6toBqG0Y4g _model_server_result.datetime_utc '2024-10-11 03:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 5SIL # _exptl.entry_id 5SIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.843 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-N-[2-(3,5-dimethylphenyl)-1H-benzimidazol-5-yl]-1-methyl-1H-pyrazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SIL _cell.length_a 141.534 _cell.length_b 141.534 _cell.length_c 141.534 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 498 1_555 A SG CYS 56 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? covale ? covale1 A C LEU 62 A LEU 508 1_555 A N CME 63 A CME 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C CME 63 A CME 509 1_555 A N ARG 64 A ARG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A NE2 HIS 83 A HIS 529 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A NE2 HIS 117 A HIS 563 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 A OD2 ASP 118 A ASP 564 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 A OD1 ASP 118 A ASP 564 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 A OD1 ASP 228 A ASP 674 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc6 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc7 C MG MG . A MG 802 1_555 E O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc8 C MG MG . A MG 802 1_555 E O HOH . A HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 C MG MG . A MG 802 1_555 E O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc10 C MG MG . A MG 802 1_555 E O HOH . A HOH 938 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc11 C MG MG . A MG 802 1_555 E O HOH . A HOH 947 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? # _chem_comp.formula 'C20 H18 Cl N5 O' _chem_comp.formula_weight 379.843 _chem_comp.id JQC _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-N-[2-(3,5-dimethylphenyl)-1H-benzimidazol-5-yl]-1-methyl-1H-pyrazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 JQC sing 194 n n C1 O3 JQC doub 195 n n C1 C6 JQC sing 196 n n N2 C23 JQC sing 197 n n C4 N12 JQC doub 198 n y C4 N13 JQC sing 199 n y C4 C15 JQC sing 200 n n N5 C6 JQC sing 201 n y N5 N9 JQC sing 202 n y N5 C10 JQC sing 203 n n C6 C7 JQC doub 204 n y C7 C8 JQC sing 205 n y C7 CL11 JQC sing 206 n n C8 N9 JQC doub 207 n y N12 C14 JQC sing 208 n y N13 C16 JQC sing 209 n y C14 C17 JQC doub 210 n y C14 C16 JQC sing 211 n y C15 C19 JQC doub 212 n y C15 C18 JQC sing 213 n y C16 C20 JQC doub 214 n y C17 C23 JQC sing 215 n y C18 C21 JQC doub 216 n y C19 C22 JQC sing 217 n y C20 C25 JQC sing 218 n y C21 C27 JQC sing 219 n n C21 C24 JQC sing 220 n y C22 C24 JQC doub 221 n y C22 C26 JQC sing 222 n n C23 C25 JQC doub 223 n y C10 H31 JQC sing 224 n n C10 H30 JQC sing 225 n n C10 H32 JQC sing 226 n n C17 H34 JQC sing 227 n n C18 H35 JQC sing 228 n n C19 H36 JQC sing 229 n n C20 H37 JQC sing 230 n n C24 H38 JQC sing 231 n n C25 H39 JQC sing 232 n n C26 H40 JQC sing 233 n n C26 H42 JQC sing 234 n n C26 H41 JQC sing 235 n n C27 H45 JQC sing 236 n n C27 H43 JQC sing 237 n n C27 H44 JQC sing 238 n n N2 H28 JQC sing 239 n n C8 H29 JQC sing 240 n n N13 H33 JQC sing 241 n n # _atom_sites.entry_id 5SIL _atom_sites.fract_transf_matrix[1][1] 0.007065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 MG A 1 802 2 MG MG . D 4 JQC A 1 803 1 JQC L0R . E 5 HOH A 1 901 45 HOH HOH . E 5 HOH A 2 902 36 HOH HOH . E 5 HOH A 3 903 39 HOH HOH . E 5 HOH A 4 904 28 HOH HOH . E 5 HOH A 5 905 5 HOH HOH . E 5 HOH A 6 906 43 HOH HOH . E 5 HOH A 7 907 32 HOH HOH . E 5 HOH A 8 908 88 HOH HOH . E 5 HOH A 9 909 7 HOH HOH . E 5 HOH A 10 910 63 HOH HOH . E 5 HOH A 11 911 10 HOH HOH . E 5 HOH A 12 912 62 HOH HOH . E 5 HOH A 13 913 3 HOH HOH . E 5 HOH A 14 914 4 HOH HOH . E 5 HOH A 15 915 40 HOH HOH . E 5 HOH A 16 916 23 HOH HOH . E 5 HOH A 17 917 24 HOH HOH . E 5 HOH A 18 918 15 HOH HOH . E 5 HOH A 19 919 25 HOH HOH . E 5 HOH A 20 920 41 HOH HOH . E 5 HOH A 21 921 20 HOH HOH . E 5 HOH A 22 922 50 HOH HOH . E 5 HOH A 23 923 49 HOH HOH . E 5 HOH A 24 924 58 HOH HOH . E 5 HOH A 25 925 6 HOH HOH . E 5 HOH A 26 926 9 HOH HOH . E 5 HOH A 27 927 75 HOH HOH . E 5 HOH A 28 928 33 HOH HOH . E 5 HOH A 29 929 61 HOH HOH . E 5 HOH A 30 930 29 HOH HOH . E 5 HOH A 31 931 38 HOH HOH . E 5 HOH A 32 932 22 HOH HOH . E 5 HOH A 33 933 34 HOH HOH . E 5 HOH A 34 934 13 HOH HOH . E 5 HOH A 35 935 27 HOH HOH . E 5 HOH A 36 936 14 HOH HOH . E 5 HOH A 37 937 17 HOH HOH . E 5 HOH A 38 938 1 HOH HOH . E 5 HOH A 39 939 12 HOH HOH . E 5 HOH A 40 940 44 HOH HOH . E 5 HOH A 41 941 92 HOH HOH . E 5 HOH A 42 942 26 HOH HOH . E 5 HOH A 43 943 18 HOH HOH . E 5 HOH A 44 944 21 HOH HOH . E 5 HOH A 45 945 101 HOH HOH . E 5 HOH A 46 946 8 HOH HOH . E 5 HOH A 47 947 2 HOH HOH . E 5 HOH A 48 948 46 HOH HOH . E 5 HOH A 49 949 48 HOH HOH . E 5 HOH A 50 950 19 HOH HOH . E 5 HOH A 51 951 71 HOH HOH . E 5 HOH A 52 952 16 HOH HOH . E 5 HOH A 53 953 72 HOH HOH . E 5 HOH A 54 954 51 HOH HOH . E 5 HOH A 55 955 11 HOH HOH . E 5 HOH A 56 956 55 HOH HOH . E 5 HOH A 57 957 83 HOH HOH . E 5 HOH A 58 958 30 HOH HOH . E 5 HOH A 59 959 100 HOH HOH . E 5 HOH A 60 960 68 HOH HOH . E 5 HOH A 61 961 82 HOH HOH . E 5 HOH A 62 962 42 HOH HOH . E 5 HOH A 63 963 52 HOH HOH . E 5 HOH A 64 964 31 HOH HOH . E 5 HOH A 65 965 86 HOH HOH . E 5 HOH A 66 966 91 HOH HOH . E 5 HOH A 67 967 54 HOH HOH . E 5 HOH A 68 968 85 HOH HOH . E 5 HOH A 69 969 93 HOH HOH . E 5 HOH A 70 970 70 HOH HOH . E 5 HOH A 71 971 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JQC . . . D 4 111.26 104.686 58.674 1 65.59 ? C10 JQC 803 A 1 HETATM 2 C C15 JQC . . . D 4 109.668 113.782 54.381 1 65.44 ? C15 JQC 803 A 1 HETATM 3 C C16 JQC . . . D 4 109.584 112.32 57.682 1 58.61 ? C16 JQC 803 A 1 HETATM 4 C C17 JQC . . . D 4 109.564 109.923 57.411 1 54.92 ? C17 JQC 803 A 1 HETATM 5 C C18 JQC . . . D 4 109.917 115.147 54.474 1 66.57 ? C18 JQC 803 A 1 HETATM 6 C C19 JQC . . . D 4 109.222 113.25 53.176 1 64.56 ? C19 JQC 803 A 1 HETATM 7 C C20 JQC . . . D 4 109.514 112.219 59.062 1 57.49 ? C20 JQC 803 A 1 HETATM 8 C C21 JQC . . . D 4 109.819 115.967 53.361 1 72.91 ? C21 JQC 803 A 1 HETATM 9 C C22 JQC . . . D 4 109.083 114.044 52.051 1 64.83 ? C22 JQC 803 A 1 HETATM 10 C C23 JQC . . . D 4 109.496 109.808 58.799 1 60.28 ? C23 JQC 803 A 1 HETATM 11 C C24 JQC . . . D 4 109.396 115.398 52.161 1 71.11 ? C24 JQC 803 A 1 HETATM 12 C C25 JQC . . . D 4 109.453 110.952 59.613 1 63.9 ? C25 JQC 803 A 1 HETATM 13 C C26 JQC . . . D 4 108.604 113.455 50.743 1 56.14 ? C26 JQC 803 A 1 HETATM 14 C C27 JQC . . . D 4 110.147 117.438 53.45 1 70.05 ? C27 JQC 803 A 1 HETATM 15 C C1 JQC . . . D 4 109.776 107.312 58.909 1 58.22 ? C1 JQC 803 A 1 HETATM 16 N N2 JQC . . . D 4 109.451 108.536 59.416 1 58.06 ? N2 JQC 803 A 1 HETATM 17 O O3 JQC . . . D 4 110.214 107.12 57.777 1 51.48 ? O3 JQC 803 A 1 HETATM 18 C C4 JQC . . . D 4 109.704 112.921 55.57 1 65.11 ? C4 JQC 803 A 1 HETATM 19 N N5 JQC . . . D 4 110.261 105.029 59.68 1 58.27 ? N5 JQC 803 A 1 HETATM 20 C C6 JQC . . . D 4 109.56 106.179 59.83 1 63.54 ? C6 JQC 803 A 1 HETATM 21 C C7 JQC . . . D 4 108.704 106.014 60.948 1 63 ? C7 JQC 803 A 1 HETATM 22 C C8 JQC . . . D 4 108.989 104.676 61.367 1 58.46 ? C8 JQC 803 A 1 HETATM 23 N N9 JQC . . . D 4 109.911 104.094 60.612 1 56.14 ? N9 JQC 803 A 1 HETATM 24 CL CL11 JQC . . . D 4 107.595 107.158 61.648 1 61.27 ? CL11 JQC 803 A 1 HETATM 25 N N12 JQC . . . D 4 109.66 111.592 55.528 1 60.41 ? N12 JQC 803 A 1 HETATM 26 N N13 JQC . . . D 4 109.624 113.407 56.836 1 61.63 ? N13 JQC 803 A 1 HETATM 27 C C14 JQC . . . D 4 109.598 111.195 56.856 1 58.7 ? C14 JQC 803 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #