data_5SK8 # _model_server_result.job_id N2p-y3W_X_1iZTlFH2kcFQ _model_server_result.datetime_utc '2024-10-11 02:18:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 5SK8 # _exptl.entry_id 5SK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.843 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloro-N-(2-phenyl-1H-benzimidazol-5-yl)-1-propyl-1H-pyrazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SK8 _cell.length_a 141.187 _cell.length_b 141.187 _cell.length_c 141.187 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 52 A CYS 498 1_555 A SG CYS 56 A CYS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A C LEU 22 A LEU 468 1_555 A N CME 23 A CME 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CME 23 A CME 469 1_555 A N LYS 24 A LYS 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C LEU 62 A LEU 508 1_555 A N CME 63 A CME 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C CME 63 A CME 509 1_555 A N ARG 64 A ARG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 83 A HIS 529 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc2 A NE2 HIS 117 A HIS 563 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 A OD2 ASP 118 A ASP 564 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 A OD1 ASP 118 A ASP 564 1_555 C MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc5 A OD1 ASP 228 A ASP 674 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc6 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc7 B ZN ZN . A ZN 801 1_555 E O HOH . A HOH 975 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc8 C MG MG . A MG 802 1_555 E O HOH . A HOH 930 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc9 C MG MG . A MG 802 1_555 E O HOH . A HOH 939 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc10 C MG MG . A MG 802 1_555 E O HOH . A HOH 961 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc11 C MG MG . A MG 802 1_555 E O HOH . A HOH 975 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc12 C MG MG . A MG 802 1_555 E O HOH . A HOH 983 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C20 H18 Cl N5 O' _chem_comp.formula_weight 379.843 _chem_comp.id KCU _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-N-(2-phenyl-1H-benzimidazol-5-yl)-1-propyl-1H-pyrazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 KCU sing 194 n n C1 O3 KCU doub 195 n n C1 C19 KCU sing 196 n n N2 C4 KCU sing 197 n n C4 C5 KCU doub 198 n y C4 C7 KCU sing 199 n y C5 C6 KCU sing 200 n y C6 C9 KCU doub 201 n y C7 C8 KCU doub 202 n y C8 C9 KCU sing 203 n y C8 N12 KCU sing 204 n y C9 N10 KCU sing 205 n y N10 C11 KCU sing 206 n y C11 N12 KCU doub 207 n y C11 C13 KCU sing 208 n n C13 C14 KCU doub 209 n y C13 C18 KCU sing 210 n y C14 C15 KCU sing 211 n y C15 C16 KCU doub 212 n y C16 C17 KCU sing 213 n y C17 C18 KCU doub 214 n y C19 N21 KCU sing 215 n y C19 C22 KCU doub 216 n y N20 N21 KCU sing 217 n y N20 C23 KCU doub 218 n y N21 C25 KCU sing 219 n n C22 C23 KCU sing 220 n y C22 CL24 KCU sing 221 n n C25 C26 KCU sing 222 n n C26 C27 KCU sing 223 n n C5 H29 KCU sing 224 n n C6 H30 KCU sing 225 n n C7 H31 KCU sing 226 n n C15 H34 KCU sing 227 n n C17 H36 KCU sing 228 n n C26 H42 KCU sing 229 n n C26 H41 KCU sing 230 n n N2 H28 KCU sing 231 n n N10 H32 KCU sing 232 n n C14 H33 KCU sing 233 n n C16 H35 KCU sing 234 n n C18 H37 KCU sing 235 n n C23 H38 KCU sing 236 n n C25 H39 KCU sing 237 n n C25 H40 KCU sing 238 n n C27 H45 KCU sing 239 n n C27 H43 KCU sing 240 n n C27 H44 KCU sing 241 n n # _atom_sites.entry_id 5SK8 _atom_sites.fract_transf_matrix[1][1] 0.007083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 801 1 ZN ZN . C 3 MG A 1 802 2 MG MG . D 4 KCU A 1 803 1 KCU LIG . E 5 HOH A 1 901 45 HOH HOH . E 5 HOH A 2 902 174 HOH HOH . E 5 HOH A 3 903 19 HOH HOH . E 5 HOH A 4 904 157 HOH HOH . E 5 HOH A 5 905 60 HOH HOH . E 5 HOH A 6 906 112 HOH HOH . E 5 HOH A 7 907 150 HOH HOH . E 5 HOH A 8 908 39 HOH HOH . E 5 HOH A 9 909 176 HOH HOH . E 5 HOH A 10 910 52 HOH HOH . E 5 HOH A 11 911 117 HOH HOH . E 5 HOH A 12 912 77 HOH HOH . E 5 HOH A 13 913 74 HOH HOH . E 5 HOH A 14 914 55 HOH HOH . E 5 HOH A 15 915 126 HOH HOH . E 5 HOH A 16 916 91 HOH HOH . E 5 HOH A 17 917 15 HOH HOH . E 5 HOH A 18 918 6 HOH HOH . E 5 HOH A 19 919 47 HOH HOH . E 5 HOH A 20 920 141 HOH HOH . E 5 HOH A 21 921 31 HOH HOH . E 5 HOH A 22 922 27 HOH HOH . E 5 HOH A 23 923 49 HOH HOH . E 5 HOH A 24 924 59 HOH HOH . E 5 HOH A 25 925 115 HOH HOH . E 5 HOH A 26 926 64 HOH HOH . E 5 HOH A 27 927 44 HOH HOH . E 5 HOH A 28 928 10 HOH HOH . E 5 HOH A 29 929 42 HOH HOH . E 5 HOH A 30 930 5 HOH HOH . E 5 HOH A 31 931 37 HOH HOH . E 5 HOH A 32 932 90 HOH HOH . E 5 HOH A 33 933 78 HOH HOH . E 5 HOH A 34 934 28 HOH HOH . E 5 HOH A 35 935 159 HOH HOH . E 5 HOH A 36 936 22 HOH HOH . E 5 HOH A 37 937 12 HOH HOH . E 5 HOH A 38 938 161 HOH HOH . E 5 HOH A 39 939 4 HOH HOH . E 5 HOH A 40 940 24 HOH HOH . E 5 HOH A 41 941 87 HOH HOH . E 5 HOH A 42 942 51 HOH HOH . E 5 HOH A 43 943 130 HOH HOH . E 5 HOH A 44 944 134 HOH HOH . E 5 HOH A 45 945 38 HOH HOH . E 5 HOH A 46 946 61 HOH HOH . E 5 HOH A 47 947 122 HOH HOH . E 5 HOH A 48 948 124 HOH HOH . E 5 HOH A 49 949 9 HOH HOH . E 5 HOH A 50 950 83 HOH HOH . E 5 HOH A 51 951 68 HOH HOH . E 5 HOH A 52 952 7 HOH HOH . E 5 HOH A 53 953 26 HOH HOH . E 5 HOH A 54 954 25 HOH HOH . E 5 HOH A 55 955 33 HOH HOH . E 5 HOH A 56 956 88 HOH HOH . E 5 HOH A 57 957 36 HOH HOH . E 5 HOH A 58 958 66 HOH HOH . E 5 HOH A 59 959 99 HOH HOH . E 5 HOH A 60 960 43 HOH HOH . E 5 HOH A 61 961 3 HOH HOH . E 5 HOH A 62 962 30 HOH HOH . E 5 HOH A 63 963 56 HOH HOH . E 5 HOH A 64 964 85 HOH HOH . E 5 HOH A 65 965 111 HOH HOH . E 5 HOH A 66 966 114 HOH HOH . E 5 HOH A 67 967 23 HOH HOH . E 5 HOH A 68 968 81 HOH HOH . E 5 HOH A 69 969 153 HOH HOH . E 5 HOH A 70 970 106 HOH HOH . E 5 HOH A 71 971 32 HOH HOH . E 5 HOH A 72 972 13 HOH HOH . E 5 HOH A 73 973 132 HOH HOH . E 5 HOH A 74 974 67 HOH HOH . E 5 HOH A 75 975 1 HOH HOH . E 5 HOH A 76 976 17 HOH HOH . E 5 HOH A 77 977 110 HOH HOH . E 5 HOH A 78 978 80 HOH HOH . E 5 HOH A 79 979 116 HOH HOH . E 5 HOH A 80 980 16 HOH HOH . E 5 HOH A 81 981 50 HOH HOH . E 5 HOH A 82 982 96 HOH HOH . E 5 HOH A 83 983 2 HOH HOH . E 5 HOH A 84 984 11 HOH HOH . E 5 HOH A 85 985 191 HOH HOH . E 5 HOH A 86 986 41 HOH HOH . E 5 HOH A 87 987 86 HOH HOH . E 5 HOH A 88 988 21 HOH HOH . E 5 HOH A 89 989 57 HOH HOH . E 5 HOH A 90 990 8 HOH HOH . E 5 HOH A 91 991 93 HOH HOH . E 5 HOH A 92 992 18 HOH HOH . E 5 HOH A 93 993 142 HOH HOH . E 5 HOH A 94 994 20 HOH HOH . E 5 HOH A 95 995 14 HOH HOH . E 5 HOH A 96 996 69 HOH HOH . E 5 HOH A 97 997 29 HOH HOH . E 5 HOH A 98 998 190 HOH HOH . E 5 HOH A 99 999 113 HOH HOH . E 5 HOH A 100 1000 127 HOH HOH . E 5 HOH A 101 1001 135 HOH HOH . E 5 HOH A 102 1002 65 HOH HOH . E 5 HOH A 103 1003 147 HOH HOH . E 5 HOH A 104 1004 63 HOH HOH . E 5 HOH A 105 1005 180 HOH HOH . E 5 HOH A 106 1006 54 HOH HOH . E 5 HOH A 107 1007 120 HOH HOH . E 5 HOH A 108 1008 148 HOH HOH . E 5 HOH A 109 1009 146 HOH HOH . E 5 HOH A 110 1010 53 HOH HOH . E 5 HOH A 111 1011 188 HOH HOH . E 5 HOH A 112 1012 98 HOH HOH . E 5 HOH A 113 1013 109 HOH HOH . E 5 HOH A 114 1014 71 HOH HOH . E 5 HOH A 115 1015 129 HOH HOH . E 5 HOH A 116 1016 149 HOH HOH . E 5 HOH A 117 1017 107 HOH HOH . E 5 HOH A 118 1018 118 HOH HOH . E 5 HOH A 119 1019 103 HOH HOH . E 5 HOH A 120 1020 76 HOH HOH . E 5 HOH A 121 1021 108 HOH HOH . E 5 HOH A 122 1022 34 HOH HOH . E 5 HOH A 123 1023 121 HOH HOH . E 5 HOH A 124 1024 145 HOH HOH . E 5 HOH A 125 1025 179 HOH HOH . E 5 HOH A 126 1026 75 HOH HOH . E 5 HOH A 127 1027 89 HOH HOH . E 5 HOH A 128 1028 143 HOH HOH . E 5 HOH A 129 1029 82 HOH HOH . E 5 HOH A 130 1030 35 HOH HOH . E 5 HOH A 131 1031 79 HOH HOH . E 5 HOH A 132 1032 170 HOH HOH . E 5 HOH A 133 1033 133 HOH HOH . E 5 HOH A 134 1034 156 HOH HOH . E 5 HOH A 135 1035 140 HOH HOH . E 5 HOH A 136 1036 94 HOH HOH . E 5 HOH A 137 1037 84 HOH HOH . E 5 HOH A 138 1038 167 HOH HOH . E 5 HOH A 139 1039 158 HOH HOH . E 5 HOH A 140 1040 73 HOH HOH . E 5 HOH A 141 1041 105 HOH HOH . E 5 HOH A 142 1042 154 HOH HOH . E 5 HOH A 143 1043 101 HOH HOH . E 5 HOH A 144 1044 40 HOH HOH . E 5 HOH A 145 1045 100 HOH HOH . E 5 HOH A 146 1046 187 HOH HOH . E 5 HOH A 147 1047 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 KCU . . . D 4 109.002 109.76 58.487 1 47.38 ? C4 KCU 803 A 1 HETATM 2 C C5 KCU . . . D 4 109.101 110.939 59.242 1 48.75 ? C5 KCU 803 A 1 HETATM 3 C C6 KCU . . . D 4 109.189 112.179 58.62 1 49.83 ? C6 KCU 803 A 1 HETATM 4 C C7 KCU . . . D 4 109 109.817 57.093 1 47.46 ? C7 KCU 803 A 1 HETATM 5 C C8 KCU . . . D 4 109.099 111.055 56.463 1 48.64 ? C8 KCU 803 A 1 HETATM 6 N N12 KCU . . . D 4 109.11 111.382 55.11 1 47.75 ? N12 KCU 803 A 1 HETATM 7 C C13 KCU . . . D 4 109.213 113.498 53.831 1 44.2 ? C13 KCU 803 A 1 HETATM 8 C C15 KCU . . . D 4 108.762 113.641 51.466 1 46.6 ? C15 KCU 803 A 1 HETATM 9 C C17 KCU . . . D 4 109.329 115.613 52.685 1 45.7 ? C17 KCU 803 A 1 HETATM 10 C C22 KCU . . . D 4 108.287 106.073 60.746 1 41.2 ? C22 KCU 803 A 1 HETATM 11 C C26 KCU . . . D 4 109.987 103.974 57.224 1 48.07 ? C26 KCU 803 A 1 HETATM 12 C C1 KCU . . . D 4 109.174 107.269 58.643 1 44.37 ? C1 KCU 803 A 1 HETATM 13 N N2 KCU . . . D 4 108.896 108.499 59.14 1 43.99 ? N2 KCU 803 A 1 HETATM 14 O O3 KCU . . . D 4 109.446 107.061 57.459 1 45.37 ? O3 KCU 803 A 1 HETATM 15 C C9 KCU . . . D 4 109.189 112.217 57.228 1 49.18 ? C9 KCU 803 A 1 HETATM 16 N N10 KCU . . . D 4 109.259 113.261 56.318 1 46.86 ? N10 KCU 803 A 1 HETATM 17 C C11 KCU . . . D 4 109.23 112.705 55.073 1 46.15 ? C11 KCU 803 A 1 HETATM 18 C C14 KCU . . . D 4 108.863 112.893 52.627 1 46.56 ? C14 KCU 803 A 1 HETATM 19 C C16 KCU . . . D 4 108.996 114.998 51.495 1 47.97 ? C16 KCU 803 A 1 HETATM 20 C C18 KCU . . . D 4 109.404 114.876 53.855 1 44.94 ? C18 KCU 803 A 1 HETATM 21 C C19 KCU . . . D 4 109.064 106.16 59.608 1 44.93 ? C19 KCU 803 A 1 HETATM 22 N N20 KCU . . . D 4 109.455 104.106 60.492 1 42.68 ? N20 KCU 803 A 1 HETATM 23 N N21 KCU . . . D 4 109.747 104.987 59.489 1 43.03 ? N21 KCU 803 A 1 HETATM 24 C C23 KCU . . . D 4 108.576 104.743 61.259 1 44.98 ? C23 KCU 803 A 1 HETATM 25 CL CL24 KCU . . . D 4 107.252 107.329 61.334 1 42.4 ? CL24 KCU 803 A 1 HETATM 26 C C25 KCU . . . D 4 110.677 104.604 58.432 1 46.01 ? C25 KCU 803 A 1 HETATM 27 C C27 KCU . . . D 4 109.083 102.719 57.595 1 48.09 ? C27 KCU 803 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #