data_5SK9
#
_model_server_result.job_id            mrE2wLLwaPb-UYwTQFQ5Tg 
_model_server_result.datetime_utc      '2024-10-10 16:32:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5sk9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":802}' 
#
_entry.id    5SK9 
#
_exptl.entry_id    5SK9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5SK9 
_cell.length_a            135.698 
_cell.length_b            135.698 
_cell.length_c            234.384 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5SK9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,Q 1 1 
B,H,I,J,R 2 1 
C,K,L,M,S 3 1 
D,N,O,P,T 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 L N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 83 A HIS 529 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc2 A NE2 HIS 117 A HIS 563 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc3 A OD2 ASP 118 A ASP 564 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc4 A O THR 187 A THR 633 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc5 A OD1 ASP 228 A ASP 674 1_555 E ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc6 E ZN ZN . A ZN 801 1_555 Q O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc7 F MG MG . A MG 802 1_555 Q O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc8 F MG MG . A MG 802 1_555 Q O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc9 F MG MG . A MG 802 1_555 Q O HOH . A HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc10 B NE2 HIS 83 B HIS 529 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc11 B NE2 HIS 117 B HIS 563 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc12 B OD2 ASP 118 B ASP 564 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc13 B OD1 ASP 118 B ASP 564 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc14 B OD1 ASP 228 B ASP 674 1_555 H ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc15 H ZN ZN . B ZN 801 1_555 R O HOH . B HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc16 I MG MG . B MG 802 1_555 R O HOH . B HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc17 I MG MG . B MG 802 1_555 R O HOH . B HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? 
metalc ? metalc18 I MG MG . B MG 802 1_555 R O HOH . B HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc19 I MG MG . B MG 802 1_555 R O HOH . B HOH 916 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc20 C NE2 HIS 83 C HIS 529 1_555 K ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc21 C NE2 HIS 117 C HIS 563 1_555 K ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc22 C OD2 ASP 118 C ASP 564 1_555 K ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc23 C OD1 ASP 118 C ASP 564 1_555 L MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc24 C OD1 ASP 228 C ASP 674 1_555 K ZN ZN . C ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc25 K ZN ZN . C ZN 801 1_555 S O HOH . C HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc26 L MG MG . C MG 802 1_555 S O HOH . C HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc27 L MG MG . C MG 802 1_555 S O HOH . C HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc28 L MG MG . C MG 802 1_555 S O HOH . C HOH 911 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc29 L MG MG . C MG 802 1_555 S O HOH . C HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc30 L MG MG . C MG 802 1_555 S O HOH . C HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc31 D NE2 HIS 83 D HIS 529 1_555 N ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc32 D NE2 HIS 117 D HIS 563 1_555 N ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc33 D OD2 ASP 118 D ASP 564 1_555 N ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc34 D OD1 ASP 118 D ASP 564 1_555 O MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc35 D OG1 THR 187 D THR 633 1_555 O MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? 
metalc ? metalc36 D OD1 ASP 228 D ASP 674 1_555 N ZN ZN . D ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc37 N ZN ZN . D ZN 801 1_555 T O HOH . D HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc38 O MG MG . D MG 802 1_555 T O HOH . D HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5SK9 
_atom_sites.fract_transf_matrix[1][1]    0.007369 
_atom_sites.fract_transf_matrix[1][2]    0.004255 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 801 1 ZN ZN . 
F 3 MG A 1 802 1 MG MG . 
G 4 KD4 A 1 803 1 KD4 LIG . 
H 2 ZN B 1 801 2 ZN ZN . 
I 3 MG B 1 802 2 MG MG . 
J 4 KD4 B 1 803 4 KD4 LIG . 
K 2 ZN C 1 801 3 ZN ZN . 
L 3 MG C 1 802 3 MG MG . 
M 4 KD4 C 1 803 3 KD4 LIG . 
N 2 ZN D 1 801 4 ZN ZN . 
O 3 MG D 1 802 4 MG MG . 
P 4 KD4 D 1 803 2 KD4 LIG . 
Q 5 HOH A 1 901 682 HOH HOH . 
Q 5 HOH A 2 902 5 HOH HOH . 
Q 5 HOH A 3 903 115 HOH HOH . 
Q 5 HOH A 4 904 479 HOH HOH . 
Q 5 HOH A 5 905 130 HOH HOH . 
Q 5 HOH A 6 906 68 HOH HOH . 
Q 5 HOH A 7 907 1 HOH HOH . 
Q 5 HOH A 8 908 82 HOH HOH . 
Q 5 HOH A 9 909 6 HOH HOH . 
Q 5 HOH A 10 910 241 HOH HOH . 
Q 5 HOH A 11 911 3 HOH HOH . 
Q 5 HOH A 12 912 80 HOH HOH . 
Q 5 HOH A 13 913 676 HOH HOH . 
Q 5 HOH A 14 914 39 HOH HOH . 
Q 5 HOH A 15 915 308 HOH HOH . 
Q 5 HOH A 16 916 440 HOH HOH . 
Q 5 HOH A 17 917 634 HOH HOH . 
Q 5 HOH A 18 918 196 HOH HOH . 
Q 5 HOH A 19 919 428 HOH HOH . 
Q 5 HOH A 20 920 342 HOH HOH . 
Q 5 HOH A 21 921 288 HOH HOH . 
Q 5 HOH A 22 922 108 HOH HOH . 
Q 5 HOH A 23 923 602 HOH HOH . 
Q 5 HOH A 24 924 414 HOH HOH . 
Q 5 HOH A 25 925 508 HOH HOH . 
R 5 HOH B 1 901 67 HOH HOH . 
R 5 HOH B 2 902 38 HOH HOH . 
R 5 HOH B 3 903 625 HOH HOH . 
R 5 HOH B 4 904 55 HOH HOH . 
R 5 HOH B 5 905 145 HOH HOH . 
R 5 HOH B 6 906 136 HOH HOH . 
R 5 HOH B 7 907 45 HOH HOH . 
R 5 HOH B 8 908 242 HOH HOH . 
R 5 HOH B 9 909 8 HOH HOH . 
R 5 HOH B 10 910 11 HOH HOH . 
R 5 HOH B 11 911 34 HOH HOH . 
R 5 HOH B 12 912 700 HOH HOH . 
R 5 HOH B 13 913 9 HOH HOH . 
R 5 HOH B 14 914 10 HOH HOH . 
R 5 HOH B 15 915 26 HOH HOH . 
R 5 HOH B 16 916 7 HOH HOH . 
R 5 HOH B 17 917 188 HOH HOH . 
R 5 HOH B 18 918 260 HOH HOH . 
R 5 HOH B 19 919 612 HOH HOH . 
R 5 HOH B 20 920 685 HOH HOH . 
R 5 HOH B 21 921 224 HOH HOH . 
R 5 HOH B 22 922 258 HOH HOH . 
R 5 HOH B 23 923 533 HOH HOH . 
R 5 HOH B 24 924 585 HOH HOH . 
R 5 HOH B 25 925 311 HOH HOH . 
R 5 HOH B 26 926 695 HOH HOH . 
R 5 HOH B 27 927 368 HOH HOH . 
R 5 HOH B 28 928 471 HOH HOH . 
S 5 HOH C 1 901 61 HOH HOH . 
S 5 HOH C 2 902 704 HOH HOH . 
S 5 HOH C 3 903 17 HOH HOH . 
S 5 HOH C 4 904 89 HOH HOH . 
S 5 HOH C 5 905 444 HOH HOH . 
S 5 HOH C 6 906 159 HOH HOH . 
S 5 HOH C 7 907 524 HOH HOH . 
S 5 HOH C 8 908 83 HOH HOH . 
S 5 HOH C 9 909 15 HOH HOH . 
S 5 HOH C 10 910 319 HOH HOH . 
S 5 HOH C 11 911 16 HOH HOH . 
S 5 HOH C 12 912 57 HOH HOH . 
S 5 HOH C 13 913 14 HOH HOH . 
S 5 HOH C 14 914 96 HOH HOH . 
S 5 HOH C 15 915 575 HOH HOH . 
S 5 HOH C 16 916 18 HOH HOH . 
S 5 HOH C 17 917 42 HOH HOH . 
S 5 HOH C 18 918 343 HOH HOH . 
S 5 HOH C 19 919 228 HOH HOH . 
S 5 HOH C 20 920 202 HOH HOH . 
S 5 HOH C 21 921 505 HOH HOH . 
S 5 HOH C 22 922 43 HOH HOH . 
S 5 HOH C 23 923 348 HOH HOH . 
S 5 HOH C 24 924 13 HOH HOH . 
S 5 HOH C 25 925 100 HOH HOH . 
S 5 HOH C 26 926 531 HOH HOH . 
S 5 HOH C 27 927 631 HOH HOH . 
S 5 HOH C 28 928 284 HOH HOH . 
S 5 HOH C 29 929 434 HOH HOH . 
S 5 HOH C 30 930 266 HOH HOH . 
S 5 HOH C 31 931 669 HOH HOH . 
S 5 HOH C 32 932 438 HOH HOH . 
S 5 HOH C 33 933 518 HOH HOH . 
T 5 HOH D 1 901 23 HOH HOH . 
T 5 HOH D 2 902 227 HOH HOH . 
T 5 HOH D 3 903 191 HOH HOH . 
T 5 HOH D 4 904 24 HOH HOH . 
T 5 HOH D 5 905 19 HOH HOH . 
T 5 HOH D 6 906 20 HOH HOH . 
T 5 HOH D 7 907 270 HOH HOH . 
T 5 HOH D 8 908 674 HOH HOH . 
T 5 HOH D 9 909 509 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               55.166 
_atom_site.Cartn_y               -3.624 
_atom_site.Cartn_z               17.846 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        48.52 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           802 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#