data_5SSV # _model_server_result.job_id cwGOan3ekoSvZonrP3SzTA _model_server_result.datetime_utc '2024-11-01 03:47:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ssv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5SSV # _exptl.entry_id 5SSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5SSV _cell.length_a 34.122 _cell.length_b 45.264 _cell.length_c 99.064 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5SSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale5 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? C ? ? ? ? ? ? ? ? ? ? 1.323 ? metalc ? metalc1 A NH1 ARG 52 A ARG 52 1_555 E MN MN . A MN 204 1_455 ? A ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A OD2 ASP 70 A ASP 70 1_555 E MN MN . A MN 204 4_466 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A OD1 ASP 87 A ASP 87 1_555 E MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc4 A ND1 HIS 114 A HIS 114 1_555 G MN MN . A MN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc5 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 A ND1 HIS 149 A HIS 149 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 A O ARG 159 A ARG 159 1_555 D MN MN . A MN 203 1_655 ? B ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc9 D MN MN . A MN 203 1_555 H O HOH . A HOH 344 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc10 D MN MN . A MN 203 1_555 H O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc11 D MN MN . A MN 203 1_555 H O HOH . A HOH 415 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.707 ? metalc ? metalc12 E MN MN . A MN 204 1_555 H O HOH . A HOH 358 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.21 ? metalc ? metalc13 E MN MN . A MN 204 1_555 H O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc14 F MN MN . A MN 205 1_555 H O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc15 F MN MN . A MN 205 1_555 H O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc16 F MN MN . A MN 205 1_555 H O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc17 F MN MN . A MN 205 1_555 H O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc18 G MN MN . A MN 206 1_555 H O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5SSV _atom_sites.fract_transf_matrix[1][1] 0.029307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 201 201 FOL FOL . C 3 NAP A 1 202 202 NAP NAP . D 4 MN A 1 203 203 MN MN . E 4 MN A 1 204 205 MN MN . F 4 MN A 1 205 1 MN MN . G 4 MN A 1 206 2 MN MN . H 5 HOH A 1 301 131 HOH HOH . H 5 HOH A 2 302 139 HOH HOH . H 5 HOH A 3 303 117 HOH HOH . H 5 HOH A 4 304 111 HOH HOH . H 5 HOH A 5 305 173 HOH HOH . H 5 HOH A 6 306 2 HOH HOH . H 5 HOH A 7 307 21 HOH HOH . H 5 HOH A 8 308 136 HOH HOH . H 5 HOH A 9 309 12 HOH HOH . H 5 HOH A 10 310 47 HOH HOH . H 5 HOH A 11 311 113 HOH HOH . H 5 HOH A 12 312 147 HOH HOH . H 5 HOH A 13 313 11 HOH HOH . H 5 HOH A 14 314 8 HOH HOH . H 5 HOH A 15 315 3 HOH HOH . H 5 HOH A 16 316 13 HOH HOH . H 5 HOH A 17 317 6 HOH HOH . H 5 HOH A 18 318 48 HOH HOH . H 5 HOH A 19 319 28 HOH HOH . H 5 HOH A 20 320 169 HOH HOH . H 5 HOH A 21 321 90 HOH HOH . H 5 HOH A 22 322 19 HOH HOH . H 5 HOH A 23 323 15 HOH HOH . H 5 HOH A 24 324 58 HOH HOH . H 5 HOH A 25 325 18 HOH HOH . H 5 HOH A 26 326 49 HOH HOH . H 5 HOH A 27 327 40 HOH HOH . H 5 HOH A 28 328 25 HOH HOH . H 5 HOH A 29 329 26 HOH HOH . H 5 HOH A 30 330 35 HOH HOH . H 5 HOH A 31 331 171 HOH HOH . H 5 HOH A 32 332 5 HOH HOH . H 5 HOH A 33 333 16 HOH HOH . H 5 HOH A 34 334 33 HOH HOH . H 5 HOH A 35 335 27 HOH HOH . H 5 HOH A 36 336 120 HOH HOH . H 5 HOH A 37 337 14 HOH HOH . H 5 HOH A 38 338 80 HOH HOH . H 5 HOH A 39 339 142 HOH HOH . H 5 HOH A 40 340 32 HOH HOH . H 5 HOH A 41 341 67 HOH HOH . H 5 HOH A 42 342 31 HOH HOH . H 5 HOH A 43 343 23 HOH HOH . H 5 HOH A 44 344 29 HOH HOH . H 5 HOH A 45 345 59 HOH HOH . H 5 HOH A 46 346 42 HOH HOH . H 5 HOH A 47 347 53 HOH HOH . H 5 HOH A 48 348 10 HOH HOH . H 5 HOH A 49 349 52 HOH HOH . H 5 HOH A 50 350 159 HOH HOH . H 5 HOH A 51 351 170 HOH HOH . H 5 HOH A 52 352 82 HOH HOH . H 5 HOH A 53 353 4 HOH HOH . H 5 HOH A 54 354 38 HOH HOH . H 5 HOH A 55 355 50 HOH HOH . H 5 HOH A 56 356 24 HOH HOH . H 5 HOH A 57 357 39 HOH HOH . H 5 HOH A 58 358 114 HOH HOH . H 5 HOH A 59 359 54 HOH HOH . H 5 HOH A 60 360 168 HOH HOH . H 5 HOH A 61 361 138 HOH HOH . H 5 HOH A 62 362 63 HOH HOH . H 5 HOH A 63 363 55 HOH HOH . H 5 HOH A 64 364 78 HOH HOH . H 5 HOH A 65 365 116 HOH HOH . H 5 HOH A 66 366 154 HOH HOH . H 5 HOH A 67 367 93 HOH HOH . H 5 HOH A 68 368 36 HOH HOH . H 5 HOH A 69 369 65 HOH HOH . H 5 HOH A 70 370 62 HOH HOH . H 5 HOH A 71 371 57 HOH HOH . H 5 HOH A 72 372 76 HOH HOH . H 5 HOH A 73 373 46 HOH HOH . H 5 HOH A 74 374 81 HOH HOH . H 5 HOH A 75 375 143 HOH HOH . H 5 HOH A 76 376 107 HOH HOH . H 5 HOH A 77 377 127 HOH HOH . H 5 HOH A 78 378 44 HOH HOH . H 5 HOH A 79 379 84 HOH HOH . H 5 HOH A 80 380 45 HOH HOH . H 5 HOH A 81 381 64 HOH HOH . H 5 HOH A 82 382 134 HOH HOH . H 5 HOH A 83 383 148 HOH HOH . H 5 HOH A 84 384 122 HOH HOH . H 5 HOH A 85 385 92 HOH HOH . H 5 HOH A 86 386 61 HOH HOH . H 5 HOH A 87 387 41 HOH HOH . H 5 HOH A 88 388 66 HOH HOH . H 5 HOH A 89 389 158 HOH HOH . H 5 HOH A 90 390 153 HOH HOH . H 5 HOH A 91 391 1 HOH HOH . H 5 HOH A 92 392 110 HOH HOH . H 5 HOH A 93 393 166 HOH HOH . H 5 HOH A 94 394 43 HOH HOH . H 5 HOH A 95 395 133 HOH HOH . H 5 HOH A 96 396 56 HOH HOH . H 5 HOH A 97 397 34 HOH HOH . H 5 HOH A 98 398 112 HOH HOH . H 5 HOH A 99 399 17 HOH HOH . H 5 HOH A 100 400 119 HOH HOH . H 5 HOH A 101 401 73 HOH HOH . H 5 HOH A 102 402 72 HOH HOH . H 5 HOH A 103 403 77 HOH HOH . H 5 HOH A 104 404 83 HOH HOH . H 5 HOH A 105 405 70 HOH HOH . H 5 HOH A 106 406 7 HOH HOH . H 5 HOH A 107 407 91 HOH HOH . H 5 HOH A 108 408 71 HOH HOH . H 5 HOH A 109 409 89 HOH HOH . H 5 HOH A 110 410 87 HOH HOH . H 5 HOH A 111 411 86 HOH HOH . H 5 HOH A 112 412 22 HOH HOH . H 5 HOH A 113 413 79 HOH HOH . H 5 HOH A 114 414 88 HOH HOH . H 5 HOH A 115 415 99 HOH HOH . H 5 HOH A 116 416 96 HOH HOH . H 5 HOH A 117 417 51 HOH HOH . H 5 HOH A 118 418 164 HOH HOH . H 5 HOH A 119 419 74 HOH HOH . H 5 HOH A 120 420 163 HOH HOH . H 5 HOH A 121 421 128 HOH HOH . H 5 HOH A 122 422 144 HOH HOH . H 5 HOH A 123 423 129 HOH HOH . H 5 HOH A 124 424 108 HOH HOH . H 5 HOH A 125 425 146 HOH HOH . H 5 HOH A 126 426 85 HOH HOH . H 5 HOH A 127 427 141 HOH HOH . H 5 HOH A 128 428 75 HOH HOH . H 5 HOH A 129 429 102 HOH HOH . H 5 HOH A 130 430 97 HOH HOH . H 5 HOH A 131 431 94 HOH HOH . H 5 HOH A 132 432 100 HOH HOH . H 5 HOH A 133 433 95 HOH HOH . H 5 HOH A 134 434 68 HOH HOH . H 5 HOH A 135 435 9 HOH HOH . H 5 HOH A 136 436 130 HOH HOH . H 5 HOH A 137 437 109 HOH HOH . H 5 HOH A 138 438 101 HOH HOH . H 5 HOH A 139 439 98 HOH HOH . H 5 HOH A 140 440 151 HOH HOH . H 5 HOH A 141 441 155 HOH HOH . H 5 HOH A 142 442 69 HOH HOH . H 5 HOH A 143 443 104 HOH HOH . H 5 HOH A 144 444 135 HOH HOH . H 5 HOH A 145 445 145 HOH HOH . H 5 HOH A 146 446 118 HOH HOH . H 5 HOH A 147 447 37 HOH HOH . H 5 HOH A 148 448 160 HOH HOH . H 5 HOH A 149 449 124 HOH HOH . H 5 HOH A 150 450 152 HOH HOH . H 5 HOH A 151 451 106 HOH HOH . H 5 HOH A 152 452 125 HOH HOH . H 5 HOH A 153 453 103 HOH HOH . H 5 HOH A 154 454 156 HOH HOH . H 5 HOH A 155 455 150 HOH HOH . H 5 HOH A 156 456 174 HOH HOH . H 5 HOH A 157 457 162 HOH HOH . H 5 HOH A 158 458 140 HOH HOH . H 5 HOH A 159 459 126 HOH HOH . H 5 HOH A 160 460 105 HOH HOH . H 5 HOH A 161 461 137 HOH HOH . H 5 HOH A 162 462 165 HOH HOH . H 5 HOH A 163 463 132 HOH HOH . H 5 HOH A 164 464 175 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 8.37 _atom_site.Cartn_y 10.125 _atom_site.Cartn_z 28.121 _atom_site.occupancy 0.26 _atom_site.B_iso_or_equiv 18.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #