data_5ST2 # _model_server_result.job_id TkRsGx0jUvpHIo5gdoWWYw _model_server_result.datetime_utc '2024-11-13 07:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5st2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5ST2 # _exptl.entry_id 5ST2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 110.114 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methylpyridazin-3(2H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.46 _cell.angle_gamma 90 _cell.entry_id 5ST2 _cell.length_a 88.536 _cell.length_b 82.015 _cell.length_c 93.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ST2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H6 N2 O' _chem_comp.formula_weight 110.114 _chem_comp.id UW6 _chem_comp.mon_nstd_flag . _chem_comp.name 5-methylpyridazin-3(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 UW6 sing 358 n n C1 C2 UW6 doub 359 n n C1 C4 UW6 sing 360 n n C2 C3 UW6 sing 361 n n C4 N1 UW6 doub 362 n n C3 O UW6 doub 363 n n C3 N UW6 sing 364 n n N1 N UW6 sing 365 n n C4 H1 UW6 sing 366 n n C2 H2 UW6 sing 367 n n N H3 UW6 sing 368 n n C H4 UW6 sing 369 n n C H5 UW6 sing 370 n n C H6 UW6 sing 371 n n # _atom_sites.entry_id 5ST2 _atom_sites.fract_transf_matrix[1][1] 0.011295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00377 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UW6 B 1 401 401 UW6 XXX . D 4 HOH A 1 2101 103 HOH HOH . D 4 HOH A 2 2102 2 HOH HOH . D 4 HOH A 3 2103 55 HOH HOH . D 4 HOH A 4 2104 101 HOH HOH . D 4 HOH A 5 2105 99 HOH HOH . D 4 HOH A 6 2106 57 HOH HOH . D 4 HOH A 7 2107 102 HOH HOH . D 4 HOH A 8 2108 11 HOH HOH . D 4 HOH A 9 2109 6 HOH HOH . D 4 HOH A 10 2110 74 HOH HOH . D 4 HOH A 11 2111 8 HOH HOH . D 4 HOH A 12 2112 7 HOH HOH . D 4 HOH A 13 2113 22 HOH HOH . D 4 HOH A 14 2114 21 HOH HOH . D 4 HOH A 15 2115 29 HOH HOH . D 4 HOH A 16 2116 88 HOH HOH . D 4 HOH A 17 2117 59 HOH HOH . D 4 HOH A 18 2118 100 HOH HOH . D 4 HOH A 19 2119 107 HOH HOH . D 4 HOH A 20 2120 83 HOH HOH . D 4 HOH A 21 2121 18 HOH HOH . D 4 HOH A 22 2122 97 HOH HOH . D 4 HOH A 23 2123 69 HOH HOH . D 4 HOH A 24 2124 53 HOH HOH . D 4 HOH A 25 2125 27 HOH HOH . D 4 HOH A 26 2126 78 HOH HOH . D 4 HOH A 27 2127 17 HOH HOH . D 4 HOH A 28 2128 32 HOH HOH . D 4 HOH A 29 2129 98 HOH HOH . D 4 HOH A 30 2130 19 HOH HOH . D 4 HOH A 31 2131 64 HOH HOH . D 4 HOH A 32 2132 31 HOH HOH . D 4 HOH A 33 2133 26 HOH HOH . D 4 HOH A 34 2134 85 HOH HOH . D 4 HOH A 35 2135 81 HOH HOH . D 4 HOH A 36 2136 5 HOH HOH . D 4 HOH A 37 2137 65 HOH HOH . D 4 HOH A 38 2138 28 HOH HOH . D 4 HOH A 39 2139 80 HOH HOH . D 4 HOH A 40 2140 40 HOH HOH . D 4 HOH A 41 2141 67 HOH HOH . D 4 HOH A 42 2142 61 HOH HOH . D 4 HOH A 43 2143 13 HOH HOH . D 4 HOH A 44 2144 96 HOH HOH . D 4 HOH A 45 2145 62 HOH HOH . D 4 HOH A 46 2146 50 HOH HOH . D 4 HOH A 47 2147 76 HOH HOH . D 4 HOH A 48 2148 45 HOH HOH . D 4 HOH A 49 2149 104 HOH HOH . D 4 HOH A 50 2150 90 HOH HOH . D 4 HOH A 51 2151 86 HOH HOH . D 4 HOH A 52 2152 79 HOH HOH . E 4 HOH B 1 501 49 HOH HOH . E 4 HOH B 2 502 68 HOH HOH . E 4 HOH B 3 503 94 HOH HOH . E 4 HOH B 4 504 10 HOH HOH . E 4 HOH B 5 505 73 HOH HOH . E 4 HOH B 6 506 71 HOH HOH . E 4 HOH B 7 507 48 HOH HOH . E 4 HOH B 8 508 105 HOH HOH . E 4 HOH B 9 509 44 HOH HOH . E 4 HOH B 10 510 16 HOH HOH . E 4 HOH B 11 511 30 HOH HOH . E 4 HOH B 12 512 106 HOH HOH . E 4 HOH B 13 513 43 HOH HOH . E 4 HOH B 14 514 95 HOH HOH . E 4 HOH B 15 515 14 HOH HOH . E 4 HOH B 16 516 39 HOH HOH . E 4 HOH B 17 517 15 HOH HOH . E 4 HOH B 18 518 20 HOH HOH . E 4 HOH B 19 519 60 HOH HOH . E 4 HOH B 20 520 36 HOH HOH . E 4 HOH B 21 521 108 HOH HOH . E 4 HOH B 22 522 89 HOH HOH . E 4 HOH B 23 523 46 HOH HOH . E 4 HOH B 24 524 23 HOH HOH . E 4 HOH B 25 525 37 HOH HOH . E 4 HOH B 26 526 42 HOH HOH . E 4 HOH B 27 527 63 HOH HOH . E 4 HOH B 28 528 93 HOH HOH . E 4 HOH B 29 529 25 HOH HOH . E 4 HOH B 30 530 66 HOH HOH . E 4 HOH B 31 531 82 HOH HOH . E 4 HOH B 32 532 24 HOH HOH . E 4 HOH B 33 533 70 HOH HOH . E 4 HOH B 34 534 56 HOH HOH . E 4 HOH B 35 535 47 HOH HOH . E 4 HOH B 36 536 41 HOH HOH . E 4 HOH B 37 537 51 HOH HOH . E 4 HOH B 38 538 38 HOH HOH . E 4 HOH B 39 539 34 HOH HOH . E 4 HOH B 40 540 91 HOH HOH . E 4 HOH B 41 541 9 HOH HOH . E 4 HOH B 42 542 4 HOH HOH . E 4 HOH B 43 543 87 HOH HOH . E 4 HOH B 44 544 35 HOH HOH . E 4 HOH B 45 545 75 HOH HOH . E 4 HOH B 46 546 92 HOH HOH . E 4 HOH B 47 547 54 HOH HOH . E 4 HOH B 48 548 3 HOH HOH . E 4 HOH B 49 549 77 HOH HOH . E 4 HOH B 50 550 33 HOH HOH . E 4 HOH B 51 551 52 HOH HOH . E 4 HOH B 52 552 12 HOH HOH . E 4 HOH B 53 553 84 HOH HOH . E 4 HOH B 54 554 58 HOH HOH . E 4 HOH B 55 555 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UW6 . . . C 3 -1.699 11.829 -34.667 0.88 20 0 N1 UW6 401 B 1 HETATM 2 C C1 UW6 . . . C 3 -0.006 13.338 -35.394 0.88 20 0 C1 UW6 401 B 1 HETATM 3 C C4 UW6 . . . C 3 -0.452 12.052 -35.134 0.88 20 0 C4 UW6 401 B 1 HETATM 4 C C3 UW6 . . . C 3 -2.131 14.044 -34.689 0.88 20 0 C3 UW6 401 B 1 HETATM 5 C C2 UW6 . . . C 3 -0.872 14.374 -35.166 0.88 20 0 C2 UW6 401 B 1 HETATM 6 O O UW6 . . . C 3 -2.979 15.025 -34.477 0.88 20 0 O UW6 401 B 1 HETATM 7 N N UW6 . . . C 3 -2.519 12.767 -34.445 0.88 20 0 N UW6 401 B 1 HETATM 8 C C UW6 . . . C 3 1.361 13.561 -35.885 0.88 20 0 C UW6 401 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #