data_5ST6 # _model_server_result.job_id miRrT9UQ727Xg7uhVaJuqw _model_server_result.datetime_utc '2024-11-16 06:50:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5st6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5ST6 # _exptl.entry_id 5ST6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.163 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-2,3-dihydro-1-benzofuran-3-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.62 _cell.angle_gamma 90 _cell.entry_id 5ST6 _cell.length_a 88.861 _cell.length_b 81.611 _cell.length_c 93.408 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ST6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 N O' _chem_comp.formula_weight 135.163 _chem_comp.id V0X _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-2,3-dihydro-1-benzofuran-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C V0X doub 358 n y C5 C4 V0X sing 359 n y C C1 V0X sing 360 n y C4 C6 V0X sing 361 n n C4 C3 V0X doub 362 n y C6 N V0X sing 363 n n C6 C7 V0X sing 364 n n C1 C2 V0X doub 365 n y C3 C2 V0X sing 366 n y C3 O V0X sing 367 n n C7 O V0X sing 368 n n C7 H1 V0X sing 369 n n C7 H2 V0X sing 370 n n C1 H3 V0X sing 371 n n C5 H4 V0X sing 372 n n C6 H5 V0X sing 373 n n C2 H6 V0X sing 374 n n N H7 V0X sing 375 n n N H8 V0X sing 376 n n C H10 V0X sing 377 n n # _atom_sites.entry_id 5ST6 _atom_sites.fract_transf_matrix[1][1] 0.011254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003792 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V0X B 1 401 401 V0X XXX . D 4 HOH A 1 2101 22 HOH HOH . D 4 HOH A 2 2102 11 HOH HOH . D 4 HOH A 3 2103 113 HOH HOH . D 4 HOH A 4 2104 59 HOH HOH . D 4 HOH A 5 2105 2 HOH HOH . D 4 HOH A 6 2106 55 HOH HOH . D 4 HOH A 7 2107 27 HOH HOH . D 4 HOH A 8 2108 4 HOH HOH . D 4 HOH A 9 2109 43 HOH HOH . D 4 HOH A 10 2110 24 HOH HOH . D 4 HOH A 11 2111 9 HOH HOH . D 4 HOH A 12 2112 69 HOH HOH . D 4 HOH A 13 2113 108 HOH HOH . D 4 HOH A 14 2114 115 HOH HOH . D 4 HOH A 15 2115 10 HOH HOH . D 4 HOH A 16 2116 111 HOH HOH . D 4 HOH A 17 2117 47 HOH HOH . D 4 HOH A 18 2118 86 HOH HOH . D 4 HOH A 19 2119 25 HOH HOH . D 4 HOH A 20 2120 8 HOH HOH . D 4 HOH A 21 2121 79 HOH HOH . D 4 HOH A 22 2122 75 HOH HOH . D 4 HOH A 23 2123 13 HOH HOH . D 4 HOH A 24 2124 63 HOH HOH . D 4 HOH A 25 2125 39 HOH HOH . D 4 HOH A 26 2126 74 HOH HOH . D 4 HOH A 27 2127 5 HOH HOH . D 4 HOH A 28 2128 31 HOH HOH . D 4 HOH A 29 2129 102 HOH HOH . D 4 HOH A 30 2130 90 HOH HOH . D 4 HOH A 31 2131 98 HOH HOH . D 4 HOH A 32 2132 3 HOH HOH . D 4 HOH A 33 2133 26 HOH HOH . D 4 HOH A 34 2134 84 HOH HOH . D 4 HOH A 35 2135 67 HOH HOH . D 4 HOH A 36 2136 30 HOH HOH . D 4 HOH A 37 2137 51 HOH HOH . D 4 HOH A 38 2138 19 HOH HOH . D 4 HOH A 39 2139 94 HOH HOH . D 4 HOH A 40 2140 34 HOH HOH . D 4 HOH A 41 2141 57 HOH HOH . D 4 HOH A 42 2142 37 HOH HOH . D 4 HOH A 43 2143 58 HOH HOH . D 4 HOH A 44 2144 65 HOH HOH . D 4 HOH A 45 2145 81 HOH HOH . D 4 HOH A 46 2146 35 HOH HOH . D 4 HOH A 47 2147 23 HOH HOH . D 4 HOH A 48 2148 107 HOH HOH . D 4 HOH A 49 2149 20 HOH HOH . D 4 HOH A 50 2150 38 HOH HOH . D 4 HOH A 51 2151 53 HOH HOH . D 4 HOH A 52 2152 97 HOH HOH . D 4 HOH A 53 2153 78 HOH HOH . D 4 HOH A 54 2154 87 HOH HOH . D 4 HOH A 55 2155 109 HOH HOH . D 4 HOH A 56 2156 77 HOH HOH . D 4 HOH A 57 2157 62 HOH HOH . D 4 HOH A 58 2158 89 HOH HOH . D 4 HOH A 59 2159 104 HOH HOH . E 4 HOH B 1 501 66 HOH HOH . E 4 HOH B 2 502 92 HOH HOH . E 4 HOH B 3 503 110 HOH HOH . E 4 HOH B 4 504 16 HOH HOH . E 4 HOH B 5 505 112 HOH HOH . E 4 HOH B 6 506 48 HOH HOH . E 4 HOH B 7 507 71 HOH HOH . E 4 HOH B 8 508 83 HOH HOH . E 4 HOH B 9 509 61 HOH HOH . E 4 HOH B 10 510 12 HOH HOH . E 4 HOH B 11 511 88 HOH HOH . E 4 HOH B 12 512 114 HOH HOH . E 4 HOH B 13 513 54 HOH HOH . E 4 HOH B 14 514 93 HOH HOH . E 4 HOH B 15 515 21 HOH HOH . E 4 HOH B 16 516 29 HOH HOH . E 4 HOH B 17 517 80 HOH HOH . E 4 HOH B 18 518 117 HOH HOH . E 4 HOH B 19 519 17 HOH HOH . E 4 HOH B 20 520 32 HOH HOH . E 4 HOH B 21 521 99 HOH HOH . E 4 HOH B 22 522 50 HOH HOH . E 4 HOH B 23 523 52 HOH HOH . E 4 HOH B 24 524 49 HOH HOH . E 4 HOH B 25 525 15 HOH HOH . E 4 HOH B 26 526 44 HOH HOH . E 4 HOH B 27 527 103 HOH HOH . E 4 HOH B 28 528 106 HOH HOH . E 4 HOH B 29 529 73 HOH HOH . E 4 HOH B 30 530 7 HOH HOH . E 4 HOH B 31 531 41 HOH HOH . E 4 HOH B 32 532 72 HOH HOH . E 4 HOH B 33 533 96 HOH HOH . E 4 HOH B 34 534 33 HOH HOH . E 4 HOH B 35 535 45 HOH HOH . E 4 HOH B 36 536 116 HOH HOH . E 4 HOH B 37 537 82 HOH HOH . E 4 HOH B 38 538 91 HOH HOH . E 4 HOH B 39 539 105 HOH HOH . E 4 HOH B 40 540 95 HOH HOH . E 4 HOH B 41 541 60 HOH HOH . E 4 HOH B 42 542 28 HOH HOH . E 4 HOH B 43 543 6 HOH HOH . E 4 HOH B 44 544 46 HOH HOH . E 4 HOH B 45 545 101 HOH HOH . E 4 HOH B 46 546 42 HOH HOH . E 4 HOH B 47 547 76 HOH HOH . E 4 HOH B 48 548 18 HOH HOH . E 4 HOH B 49 549 85 HOH HOH . E 4 HOH B 50 550 40 HOH HOH . E 4 HOH B 51 551 68 HOH HOH . E 4 HOH B 52 552 36 HOH HOH . E 4 HOH B 53 553 56 HOH HOH . E 4 HOH B 54 554 14 HOH HOH . E 4 HOH B 55 555 100 HOH HOH . E 4 HOH B 56 556 70 HOH HOH . E 4 HOH B 57 557 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 V0X . . . C 3 22.492 7.775 -35.083 0.62 20 0 C7 V0X 401 B 1 HETATM 2 C C1 V0X . . . C 3 18.155 8.305 -36.061 0.62 20 0 C1 V0X 401 B 1 HETATM 3 C C5 V0X . . . C 3 19.952 9.17 -37.344 0.62 20 0 C5 V0X 401 B 1 HETATM 4 C C6 V0X . . . C 3 22.275 8.64 -36.315 0.62 20 0 C6 V0X 401 B 1 HETATM 5 C C4 V0X . . . C 3 20.802 8.642 -36.415 0.62 20 0 C4 V0X 401 B 1 HETATM 6 C C3 V0X . . . C 3 20.307 7.96 -35.353 0.62 20 0 C3 V0X 401 B 1 HETATM 7 C C2 V0X . . . C 3 19 7.778 -35.119 0.62 20 0 C2 V0X 401 B 1 HETATM 8 N N V0X . . . C 3 22.739 10.056 -35.943 0.62 20 1 N V0X 401 B 1 HETATM 9 C C V0X . . . C 3 18.633 8.989 -37.162 0.62 20 0 C V0X 401 B 1 HETATM 10 O O V0X . . . C 3 21.245 7.451 -34.588 0.62 20 0 O V0X 401 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #