data_5ST7 # _model_server_result.job_id 2cH3nHGCugRMaKSLpf0gxg _model_server_result.datetime_utc '2024-11-13 08:05:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5st7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5ST7 # _exptl.entry_id 5ST7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.252 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R)-3-(benzylamino)oxolane-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.86 _cell.angle_gamma 90 _cell.entry_id 5ST7 _cell.length_a 89.321 _cell.length_b 81.767 _cell.length_c 93.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ST7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H15 N O3' _chem_comp.formula_weight 221.252 _chem_comp.id V29 _chem_comp.mon_nstd_flag . _chem_comp.name '(3R)-3-(benzylamino)oxolane-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 V29 doub 358 n y C4 C3 V29 sing 359 n y C5 C V29 sing 360 n y C6 C3 V29 sing 361 n n C6 N V29 sing 362 n n C3 C2 V29 doub 363 n y O C10 V29 sing 364 n n O C9 V29 sing 365 n n C C1 V29 doub 366 n y C10 C7 V29 sing 367 n n C2 C1 V29 sing 368 n y C9 C8 V29 sing 369 n n N C7 V29 sing 370 n n C7 C8 V29 sing 371 n n C7 C11 V29 sing 372 n n O2 C11 V29 doub 373 n n C11 O1 V29 sing 374 n n C8 H1 V29 sing 375 n n C8 H2 V29 sing 376 n n C9 H3 V29 sing 377 n n C9 H4 V29 sing 378 n n O1 H5 V29 sing 379 n n C1 H6 V29 sing 380 n n C5 H7 V29 sing 381 n n C6 H8 V29 sing 382 n n C6 H9 V29 sing 383 n n C4 H10 V29 sing 384 n n C2 H11 V29 sing 385 n n C10 H12 V29 sing 386 n n C10 H13 V29 sing 387 n n N H14 V29 sing 388 n n C H16 V29 sing 389 n n # _atom_sites.entry_id 5ST7 _atom_sites.fract_transf_matrix[1][1] 0.011196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003824 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V29 B 1 401 401 V29 XXX . D 4 HOH A 1 2101 15 HOH HOH . D 4 HOH A 2 2102 93 HOH HOH . D 4 HOH A 3 2103 152 HOH HOH . D 4 HOH A 4 2104 147 HOH HOH . D 4 HOH A 5 2105 160 HOH HOH . D 4 HOH A 6 2106 169 HOH HOH . D 4 HOH A 7 2107 156 HOH HOH . D 4 HOH A 8 2108 120 HOH HOH . D 4 HOH A 9 2109 85 HOH HOH . D 4 HOH A 10 2110 171 HOH HOH . D 4 HOH A 11 2111 146 HOH HOH . D 4 HOH A 12 2112 199 HOH HOH . D 4 HOH A 13 2113 195 HOH HOH . D 4 HOH A 14 2114 28 HOH HOH . D 4 HOH A 15 2115 10 HOH HOH . D 4 HOH A 16 2116 5 HOH HOH . D 4 HOH A 17 2117 137 HOH HOH . D 4 HOH A 18 2118 19 HOH HOH . D 4 HOH A 19 2119 38 HOH HOH . D 4 HOH A 20 2120 82 HOH HOH . D 4 HOH A 21 2121 182 HOH HOH . D 4 HOH A 22 2122 161 HOH HOH . D 4 HOH A 23 2123 117 HOH HOH . D 4 HOH A 24 2124 98 HOH HOH . D 4 HOH A 25 2125 128 HOH HOH . D 4 HOH A 26 2126 7 HOH HOH . D 4 HOH A 27 2127 36 HOH HOH . D 4 HOH A 28 2128 51 HOH HOH . D 4 HOH A 29 2129 166 HOH HOH . D 4 HOH A 30 2130 12 HOH HOH . D 4 HOH A 31 2131 113 HOH HOH . D 4 HOH A 32 2132 48 HOH HOH . D 4 HOH A 33 2133 40 HOH HOH . D 4 HOH A 34 2134 175 HOH HOH . D 4 HOH A 35 2135 13 HOH HOH . D 4 HOH A 36 2136 58 HOH HOH . D 4 HOH A 37 2137 4 HOH HOH . D 4 HOH A 38 2138 116 HOH HOH . D 4 HOH A 39 2139 9 HOH HOH . D 4 HOH A 40 2140 142 HOH HOH . D 4 HOH A 41 2141 61 HOH HOH . D 4 HOH A 42 2142 22 HOH HOH . D 4 HOH A 43 2143 74 HOH HOH . D 4 HOH A 44 2144 105 HOH HOH . D 4 HOH A 45 2145 193 HOH HOH . D 4 HOH A 46 2146 157 HOH HOH . D 4 HOH A 47 2147 153 HOH HOH . D 4 HOH A 48 2148 62 HOH HOH . D 4 HOH A 49 2149 25 HOH HOH . D 4 HOH A 50 2150 168 HOH HOH . D 4 HOH A 51 2151 42 HOH HOH . D 4 HOH A 52 2152 2 HOH HOH . D 4 HOH A 53 2153 201 HOH HOH . D 4 HOH A 54 2154 20 HOH HOH . D 4 HOH A 55 2155 158 HOH HOH . D 4 HOH A 56 2156 103 HOH HOH . D 4 HOH A 57 2157 68 HOH HOH . D 4 HOH A 58 2158 99 HOH HOH . D 4 HOH A 59 2159 165 HOH HOH . D 4 HOH A 60 2160 164 HOH HOH . D 4 HOH A 61 2161 78 HOH HOH . D 4 HOH A 62 2162 163 HOH HOH . D 4 HOH A 63 2163 50 HOH HOH . D 4 HOH A 64 2164 102 HOH HOH . D 4 HOH A 65 2165 150 HOH HOH . D 4 HOH A 66 2166 115 HOH HOH . D 4 HOH A 67 2167 84 HOH HOH . D 4 HOH A 68 2168 86 HOH HOH . D 4 HOH A 69 2169 178 HOH HOH . D 4 HOH A 70 2170 190 HOH HOH . D 4 HOH A 71 2171 95 HOH HOH . D 4 HOH A 72 2172 66 HOH HOH . D 4 HOH A 73 2173 94 HOH HOH . D 4 HOH A 74 2174 8 HOH HOH . D 4 HOH A 75 2175 11 HOH HOH . D 4 HOH A 76 2176 122 HOH HOH . D 4 HOH A 77 2177 41 HOH HOH . D 4 HOH A 78 2178 14 HOH HOH . D 4 HOH A 79 2179 119 HOH HOH . D 4 HOH A 80 2180 6 HOH HOH . D 4 HOH A 81 2181 176 HOH HOH . D 4 HOH A 82 2182 200 HOH HOH . D 4 HOH A 83 2183 60 HOH HOH . D 4 HOH A 84 2184 143 HOH HOH . D 4 HOH A 85 2185 71 HOH HOH . D 4 HOH A 86 2186 39 HOH HOH . D 4 HOH A 87 2187 177 HOH HOH . D 4 HOH A 88 2188 141 HOH HOH . D 4 HOH A 89 2189 109 HOH HOH . D 4 HOH A 90 2190 79 HOH HOH . D 4 HOH A 91 2191 77 HOH HOH . D 4 HOH A 92 2192 29 HOH HOH . D 4 HOH A 93 2193 126 HOH HOH . D 4 HOH A 94 2194 37 HOH HOH . D 4 HOH A 95 2195 155 HOH HOH . D 4 HOH A 96 2196 101 HOH HOH . D 4 HOH A 97 2197 138 HOH HOH . D 4 HOH A 98 2198 56 HOH HOH . D 4 HOH A 99 2199 133 HOH HOH . D 4 HOH A 100 2200 189 HOH HOH . E 4 HOH B 1 501 3 HOH HOH . E 4 HOH B 2 502 123 HOH HOH . E 4 HOH B 3 503 124 HOH HOH . E 4 HOH B 4 504 170 HOH HOH . E 4 HOH B 5 505 72 HOH HOH . E 4 HOH B 6 506 24 HOH HOH . E 4 HOH B 7 507 140 HOH HOH . E 4 HOH B 8 508 96 HOH HOH . E 4 HOH B 9 509 131 HOH HOH . E 4 HOH B 10 510 83 HOH HOH . E 4 HOH B 11 511 57 HOH HOH . E 4 HOH B 12 512 70 HOH HOH . E 4 HOH B 13 513 34 HOH HOH . E 4 HOH B 14 514 127 HOH HOH . E 4 HOH B 15 515 194 HOH HOH . E 4 HOH B 16 516 118 HOH HOH . E 4 HOH B 17 517 53 HOH HOH . E 4 HOH B 18 518 35 HOH HOH . E 4 HOH B 19 519 159 HOH HOH . E 4 HOH B 20 520 90 HOH HOH . E 4 HOH B 21 521 27 HOH HOH . E 4 HOH B 22 522 125 HOH HOH . E 4 HOH B 23 523 149 HOH HOH . E 4 HOH B 24 524 110 HOH HOH . E 4 HOH B 25 525 111 HOH HOH . E 4 HOH B 26 526 80 HOH HOH . E 4 HOH B 27 527 33 HOH HOH . E 4 HOH B 28 528 129 HOH HOH . E 4 HOH B 29 529 100 HOH HOH . E 4 HOH B 30 530 81 HOH HOH . E 4 HOH B 31 531 59 HOH HOH . E 4 HOH B 32 532 26 HOH HOH . E 4 HOH B 33 533 183 HOH HOH . E 4 HOH B 34 534 89 HOH HOH . E 4 HOH B 35 535 87 HOH HOH . E 4 HOH B 36 536 55 HOH HOH . E 4 HOH B 37 537 191 HOH HOH . E 4 HOH B 38 538 16 HOH HOH . E 4 HOH B 39 539 17 HOH HOH . E 4 HOH B 40 540 47 HOH HOH . E 4 HOH B 41 541 75 HOH HOH . E 4 HOH B 42 542 197 HOH HOH . E 4 HOH B 43 543 106 HOH HOH . E 4 HOH B 44 544 21 HOH HOH . E 4 HOH B 45 545 151 HOH HOH . E 4 HOH B 46 546 114 HOH HOH . E 4 HOH B 47 547 45 HOH HOH . E 4 HOH B 48 548 135 HOH HOH . E 4 HOH B 49 549 148 HOH HOH . E 4 HOH B 50 550 73 HOH HOH . E 4 HOH B 51 551 180 HOH HOH . E 4 HOH B 52 552 23 HOH HOH . E 4 HOH B 53 553 104 HOH HOH . E 4 HOH B 54 554 134 HOH HOH . E 4 HOH B 55 555 64 HOH HOH . E 4 HOH B 56 556 162 HOH HOH . E 4 HOH B 57 557 31 HOH HOH . E 4 HOH B 58 558 145 HOH HOH . E 4 HOH B 59 559 52 HOH HOH . E 4 HOH B 60 560 63 HOH HOH . E 4 HOH B 61 561 88 HOH HOH . E 4 HOH B 62 562 179 HOH HOH . E 4 HOH B 63 563 136 HOH HOH . E 4 HOH B 64 564 46 HOH HOH . E 4 HOH B 65 565 172 HOH HOH . E 4 HOH B 66 566 154 HOH HOH . E 4 HOH B 67 567 67 HOH HOH . E 4 HOH B 68 568 91 HOH HOH . E 4 HOH B 69 569 192 HOH HOH . E 4 HOH B 70 570 121 HOH HOH . E 4 HOH B 71 571 54 HOH HOH . E 4 HOH B 72 572 108 HOH HOH . E 4 HOH B 73 573 174 HOH HOH . E 4 HOH B 74 574 18 HOH HOH . E 4 HOH B 75 575 76 HOH HOH . E 4 HOH B 76 576 65 HOH HOH . E 4 HOH B 77 577 167 HOH HOH . E 4 HOH B 78 578 132 HOH HOH . E 4 HOH B 79 579 30 HOH HOH . E 4 HOH B 80 580 97 HOH HOH . E 4 HOH B 81 581 198 HOH HOH . E 4 HOH B 82 582 44 HOH HOH . E 4 HOH B 83 583 181 HOH HOH . E 4 HOH B 84 584 112 HOH HOH . E 4 HOH B 85 585 69 HOH HOH . E 4 HOH B 86 586 130 HOH HOH . E 4 HOH B 87 587 49 HOH HOH . E 4 HOH B 88 588 43 HOH HOH . E 4 HOH B 89 589 196 HOH HOH . E 4 HOH B 90 590 187 HOH HOH . E 4 HOH B 91 591 32 HOH HOH . E 4 HOH B 92 592 144 HOH HOH . E 4 HOH B 93 593 186 HOH HOH . E 4 HOH B 94 594 92 HOH HOH . E 4 HOH B 95 595 173 HOH HOH . E 4 HOH B 96 596 139 HOH HOH . E 4 HOH B 97 597 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 V29 . A . C 3 24.388 8.827 -34.676 0.08 20 0 C7 V29 401 B 1 HETATM 2 C C7 V29 . B . C 3 24.464 10.185 -35.629 0.5 20 0 C7 V29 401 B 1 HETATM 3 C C8 V29 . A . C 3 25.104 9.984 -33.99 0.08 20 0 C8 V29 401 B 1 HETATM 4 C C8 V29 . B . C 3 25.415 9.228 -36.321 0.5 20 0 C8 V29 401 B 1 HETATM 5 C C9 V29 . A . C 3 25.624 10.784 -35.195 0.08 20 0 C9 V29 401 B 1 HETATM 6 C C9 V29 . B . C 3 26.391 8.876 -35.213 0.5 20 0 C9 V29 401 B 1 HETATM 7 O O1 V29 . A . C 3 23.377 7.73 -32.788 0.08 20 0 O1 V29 401 B 1 HETATM 8 O O1 V29 . B . C 3 25.16 12.036 -36.877 0.5 20 0 O1 V29 401 B 1 HETATM 9 C C1 V29 . A . C 3 19.003 7.859 -35.245 0.08 20 0 C1 V29 401 B 1 HETATM 10 C C1 V29 . B . C 3 19.064 9.076 -37.328 0.5 20 0 C1 V29 401 B 1 HETATM 11 C C5 V29 . A . C 3 18.94 9.102 -37.304 0.08 20 0 C5 V29 401 B 1 HETATM 12 C C5 V29 . B . C 3 19.066 7.866 -35.27 0.5 20 0 C5 V29 401 B 1 HETATM 13 C C6 V29 . A . C 3 22.535 8.516 -36.38 0.08 20 0 C6 V29 401 B 1 HETATM 14 C C6 V29 . B . C 3 22.627 8.512 -36.241 0.5 20 0 C6 V29 401 B 1 HETATM 15 C C4 V29 . A . C 3 20.324 9.121 -37.34 0.08 20 0 C4 V29 401 B 1 HETATM 16 C C4 V29 . B . C 3 20.432 7.906 -35.239 0.5 20 0 C4 V29 401 B 1 HETATM 17 C C3 V29 . A . C 3 21.042 8.503 -36.32 0.08 20 0 C3 V29 401 B 1 HETATM 18 C C3 V29 . B . C 3 21.118 8.525 -36.249 0.5 20 0 C3 V29 401 B 1 HETATM 19 C C2 V29 . A . C 3 20.387 7.873 -35.272 0.08 20 0 C2 V29 401 B 1 HETATM 20 C C2 V29 . B . C 3 20.423 9.113 -37.302 0.5 20 0 C2 V29 401 B 1 HETATM 21 O O2 V29 . A . C 3 24.921 6.609 -33.974 0.08 20 -1 O2 V29 401 B 1 HETATM 22 O O2 V29 . B . C 3 22.999 11.566 -36.87 0.5 20 -1 O2 V29 401 B 1 HETATM 23 C C11 V29 . A . C 3 24.207 7.558 -33.686 0.08 20 0 C11 V29 401 B 1 HETATM 24 C C11 V29 . B . C 3 24.157 11.42 -36.586 0.5 20 0 C11 V29 401 B 1 HETATM 25 C C10 V29 . A . C 3 25.329 8.61 -35.858 0.08 20 0 C10 V29 401 B 1 HETATM 26 C C10 V29 . B . C 3 25.247 10.592 -34.413 0.5 20 0 C10 V29 401 B 1 HETATM 27 O O V29 . A . C 3 25.565 9.923 -36.315 0.08 20 0 O V29 401 B 1 HETATM 28 O O V29 . B . C 3 25.847 9.418 -34.059 0.5 20 0 O V29 401 B 1 HETATM 29 N N V29 . A . C 3 23.026 9.288 -35.156 0.08 20 1 N V29 401 B 1 HETATM 30 N N V29 . B . C 3 23.191 9.456 -35.203 0.5 20 1 N V29 401 B 1 HETATM 31 C C V29 . A . C 3 18.28 8.472 -36.259 0.08 20 0 C V29 401 B 1 HETATM 32 C C V29 . B . C 3 18.381 8.448 -36.307 0.5 20 0 C V29 401 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #