data_5ST9 # _model_server_result.job_id 2elD2tJJuPWq-rhBeVZUcg _model_server_result.datetime_utc '2024-11-13 07:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5st9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2101}' # _entry.id 5ST9 # _exptl.entry_id 5ST9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.262 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4-butanoylpiperazin-1-yl)acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.9 _cell.angle_gamma 90 _cell.entry_id 5ST9 _cell.length_a 89.151 _cell.length_b 81.783 _cell.length_c 93.917 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ST9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H18 N2 O3' _chem_comp.formula_weight 214.262 _chem_comp.id V8E _chem_comp.mon_nstd_flag . _chem_comp.name '(4-butanoylpiperazin-1-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C9 V8E doub 358 n n O1 C9 V8E sing 359 n n C9 C8 V8E sing 360 n n C6 N1 V8E sing 361 n n C6 C7 V8E sing 362 n n N1 C8 V8E sing 363 n n N1 C5 V8E sing 364 n n C4 N V8E sing 365 n n C4 C5 V8E sing 366 n n N C7 V8E sing 367 n n N C3 V8E sing 368 n n C C1 V8E sing 369 n n C3 O V8E doub 370 n n C3 C2 V8E sing 371 n n C1 C2 V8E sing 372 n n C7 H2 V8E sing 373 n n C7 H3 V8E sing 374 n n C8 H4 V8E sing 375 n n C8 H5 V8E sing 376 n n O1 H6 V8E sing 377 n n C1 H7 V8E sing 378 n n C1 H8 V8E sing 379 n n C5 H9 V8E sing 380 n n C5 H10 V8E sing 381 n n C6 H11 V8E sing 382 n n C6 H12 V8E sing 383 n n C4 H13 V8E sing 384 n n C4 H14 V8E sing 385 n n C2 H15 V8E sing 386 n n C2 H16 V8E sing 387 n n C H17 V8E sing 388 n n C H18 V8E sing 389 n n C H19 V8E sing 390 n n # _atom_sites.entry_id 5ST9 _atom_sites.fract_transf_matrix[1][1] 0.011217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00384 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V8E A 1 2101 2101 V8E XXX . D 4 HOH A 1 2201 223 HOH HOH . D 4 HOH A 2 2202 178 HOH HOH . D 4 HOH A 3 2203 101 HOH HOH . D 4 HOH A 4 2204 25 HOH HOH . D 4 HOH A 5 2205 186 HOH HOH . D 4 HOH A 6 2206 107 HOH HOH . D 4 HOH A 7 2207 68 HOH HOH . D 4 HOH A 8 2208 193 HOH HOH . D 4 HOH A 9 2209 147 HOH HOH . D 4 HOH A 10 2210 210 HOH HOH . D 4 HOH A 11 2211 120 HOH HOH . D 4 HOH A 12 2212 6 HOH HOH . D 4 HOH A 13 2213 30 HOH HOH . D 4 HOH A 14 2214 26 HOH HOH . D 4 HOH A 15 2215 66 HOH HOH . D 4 HOH A 16 2216 159 HOH HOH . D 4 HOH A 17 2217 196 HOH HOH . D 4 HOH A 18 2218 3 HOH HOH . D 4 HOH A 19 2219 5 HOH HOH . D 4 HOH A 20 2220 188 HOH HOH . D 4 HOH A 21 2221 140 HOH HOH . D 4 HOH A 22 2222 28 HOH HOH . D 4 HOH A 23 2223 112 HOH HOH . D 4 HOH A 24 2224 148 HOH HOH . D 4 HOH A 25 2225 127 HOH HOH . D 4 HOH A 26 2226 235 HOH HOH . D 4 HOH A 27 2227 56 HOH HOH . D 4 HOH A 28 2228 171 HOH HOH . D 4 HOH A 29 2229 192 HOH HOH . D 4 HOH A 30 2230 203 HOH HOH . D 4 HOH A 31 2231 98 HOH HOH . D 4 HOH A 32 2232 12 HOH HOH . D 4 HOH A 33 2233 72 HOH HOH . D 4 HOH A 34 2234 136 HOH HOH . D 4 HOH A 35 2235 139 HOH HOH . D 4 HOH A 36 2236 190 HOH HOH . D 4 HOH A 37 2237 99 HOH HOH . D 4 HOH A 38 2238 77 HOH HOH . D 4 HOH A 39 2239 207 HOH HOH . D 4 HOH A 40 2240 10 HOH HOH . D 4 HOH A 41 2241 97 HOH HOH . D 4 HOH A 42 2242 221 HOH HOH . D 4 HOH A 43 2243 241 HOH HOH . D 4 HOH A 44 2244 15 HOH HOH . D 4 HOH A 45 2245 67 HOH HOH . D 4 HOH A 46 2246 9 HOH HOH . D 4 HOH A 47 2247 11 HOH HOH . D 4 HOH A 48 2248 209 HOH HOH . D 4 HOH A 49 2249 2 HOH HOH . D 4 HOH A 50 2250 70 HOH HOH . D 4 HOH A 51 2251 49 HOH HOH . D 4 HOH A 52 2252 47 HOH HOH . D 4 HOH A 53 2253 115 HOH HOH . D 4 HOH A 54 2254 103 HOH HOH . D 4 HOH A 55 2255 109 HOH HOH . D 4 HOH A 56 2256 86 HOH HOH . D 4 HOH A 57 2257 174 HOH HOH . D 4 HOH A 58 2258 195 HOH HOH . D 4 HOH A 59 2259 211 HOH HOH . D 4 HOH A 60 2260 4 HOH HOH . D 4 HOH A 61 2261 177 HOH HOH . D 4 HOH A 62 2262 122 HOH HOH . D 4 HOH A 63 2263 164 HOH HOH . D 4 HOH A 64 2264 59 HOH HOH . D 4 HOH A 65 2265 179 HOH HOH . D 4 HOH A 66 2266 230 HOH HOH . D 4 HOH A 67 2267 234 HOH HOH . D 4 HOH A 68 2268 16 HOH HOH . D 4 HOH A 69 2269 198 HOH HOH . D 4 HOH A 70 2270 133 HOH HOH . D 4 HOH A 71 2271 237 HOH HOH . D 4 HOH A 72 2272 63 HOH HOH . D 4 HOH A 73 2273 146 HOH HOH . D 4 HOH A 74 2274 83 HOH HOH . D 4 HOH A 75 2275 81 HOH HOH . D 4 HOH A 76 2276 216 HOH HOH . D 4 HOH A 77 2277 157 HOH HOH . D 4 HOH A 78 2278 7 HOH HOH . D 4 HOH A 79 2279 76 HOH HOH . D 4 HOH A 80 2280 199 HOH HOH . D 4 HOH A 81 2281 197 HOH HOH . D 4 HOH A 82 2282 167 HOH HOH . D 4 HOH A 83 2283 108 HOH HOH . D 4 HOH A 84 2284 8 HOH HOH . D 4 HOH A 85 2285 100 HOH HOH . D 4 HOH A 86 2286 144 HOH HOH . D 4 HOH A 87 2287 189 HOH HOH . D 4 HOH A 88 2288 240 HOH HOH . D 4 HOH A 89 2289 51 HOH HOH . D 4 HOH A 90 2290 22 HOH HOH . D 4 HOH A 91 2291 75 HOH HOH . D 4 HOH A 92 2292 71 HOH HOH . D 4 HOH A 93 2293 36 HOH HOH . D 4 HOH A 94 2294 227 HOH HOH . D 4 HOH A 95 2295 41 HOH HOH . D 4 HOH A 96 2296 60 HOH HOH . D 4 HOH A 97 2297 55 HOH HOH . D 4 HOH A 98 2298 13 HOH HOH . D 4 HOH A 99 2299 150 HOH HOH . D 4 HOH A 100 2300 142 HOH HOH . D 4 HOH A 101 2301 114 HOH HOH . D 4 HOH A 102 2302 220 HOH HOH . D 4 HOH A 103 2303 224 HOH HOH . D 4 HOH A 104 2304 45 HOH HOH . D 4 HOH A 105 2305 18 HOH HOH . D 4 HOH A 106 2306 152 HOH HOH . D 4 HOH A 107 2307 132 HOH HOH . D 4 HOH A 108 2308 79 HOH HOH . D 4 HOH A 109 2309 32 HOH HOH . D 4 HOH A 110 2310 124 HOH HOH . D 4 HOH A 111 2311 166 HOH HOH . D 4 HOH A 112 2312 73 HOH HOH . D 4 HOH A 113 2313 19 HOH HOH . D 4 HOH A 114 2314 87 HOH HOH . D 4 HOH A 115 2315 226 HOH HOH . D 4 HOH A 116 2316 143 HOH HOH . D 4 HOH A 117 2317 155 HOH HOH . D 4 HOH A 118 2318 145 HOH HOH . D 4 HOH A 119 2319 89 HOH HOH . D 4 HOH A 120 2320 213 HOH HOH . D 4 HOH A 121 2321 123 HOH HOH . D 4 HOH A 122 2322 96 HOH HOH . D 4 HOH A 123 2323 200 HOH HOH . D 4 HOH A 124 2324 215 HOH HOH . D 4 HOH A 125 2325 23 HOH HOH . D 4 HOH A 126 2326 153 HOH HOH . D 4 HOH A 127 2327 141 HOH HOH . D 4 HOH A 128 2328 212 HOH HOH . E 4 HOH B 1 401 78 HOH HOH . E 4 HOH B 2 402 126 HOH HOH . E 4 HOH B 3 403 111 HOH HOH . E 4 HOH B 4 404 172 HOH HOH . E 4 HOH B 5 405 228 HOH HOH . E 4 HOH B 6 406 34 HOH HOH . E 4 HOH B 7 407 84 HOH HOH . E 4 HOH B 8 408 80 HOH HOH . E 4 HOH B 9 409 40 HOH HOH . E 4 HOH B 10 410 233 HOH HOH . E 4 HOH B 11 411 204 HOH HOH . E 4 HOH B 12 412 27 HOH HOH . E 4 HOH B 13 413 104 HOH HOH . E 4 HOH B 14 414 165 HOH HOH . E 4 HOH B 15 415 180 HOH HOH . E 4 HOH B 16 416 151 HOH HOH . E 4 HOH B 17 417 162 HOH HOH . E 4 HOH B 18 418 160 HOH HOH . E 4 HOH B 19 419 116 HOH HOH . E 4 HOH B 20 420 183 HOH HOH . E 4 HOH B 21 421 161 HOH HOH . E 4 HOH B 22 422 206 HOH HOH . E 4 HOH B 23 423 222 HOH HOH . E 4 HOH B 24 424 125 HOH HOH . E 4 HOH B 25 425 135 HOH HOH . E 4 HOH B 26 426 134 HOH HOH . E 4 HOH B 27 427 85 HOH HOH . E 4 HOH B 28 428 137 HOH HOH . E 4 HOH B 29 429 191 HOH HOH . E 4 HOH B 30 430 31 HOH HOH . E 4 HOH B 31 431 239 HOH HOH . E 4 HOH B 32 432 185 HOH HOH . E 4 HOH B 33 433 48 HOH HOH . E 4 HOH B 34 434 218 HOH HOH . E 4 HOH B 35 435 44 HOH HOH . E 4 HOH B 36 436 128 HOH HOH . E 4 HOH B 37 437 229 HOH HOH . E 4 HOH B 38 438 29 HOH HOH . E 4 HOH B 39 439 95 HOH HOH . E 4 HOH B 40 440 61 HOH HOH . E 4 HOH B 41 441 129 HOH HOH . E 4 HOH B 42 442 20 HOH HOH . E 4 HOH B 43 443 169 HOH HOH . E 4 HOH B 44 444 90 HOH HOH . E 4 HOH B 45 445 232 HOH HOH . E 4 HOH B 46 446 121 HOH HOH . E 4 HOH B 47 447 35 HOH HOH . E 4 HOH B 48 448 119 HOH HOH . E 4 HOH B 49 449 21 HOH HOH . E 4 HOH B 50 450 42 HOH HOH . E 4 HOH B 51 451 39 HOH HOH . E 4 HOH B 52 452 57 HOH HOH . E 4 HOH B 53 453 106 HOH HOH . E 4 HOH B 54 454 184 HOH HOH . E 4 HOH B 55 455 17 HOH HOH . E 4 HOH B 56 456 138 HOH HOH . E 4 HOH B 57 457 173 HOH HOH . E 4 HOH B 58 458 170 HOH HOH . E 4 HOH B 59 459 194 HOH HOH . E 4 HOH B 60 460 117 HOH HOH . E 4 HOH B 61 461 102 HOH HOH . E 4 HOH B 62 462 62 HOH HOH . E 4 HOH B 63 463 65 HOH HOH . E 4 HOH B 64 464 54 HOH HOH . E 4 HOH B 65 465 52 HOH HOH . E 4 HOH B 66 466 38 HOH HOH . E 4 HOH B 67 467 37 HOH HOH . E 4 HOH B 68 468 149 HOH HOH . E 4 HOH B 69 469 33 HOH HOH . E 4 HOH B 70 470 92 HOH HOH . E 4 HOH B 71 471 163 HOH HOH . E 4 HOH B 72 472 69 HOH HOH . E 4 HOH B 73 473 201 HOH HOH . E 4 HOH B 74 474 217 HOH HOH . E 4 HOH B 75 475 105 HOH HOH . E 4 HOH B 76 476 231 HOH HOH . E 4 HOH B 77 477 93 HOH HOH . E 4 HOH B 78 478 82 HOH HOH . E 4 HOH B 79 479 158 HOH HOH . E 4 HOH B 80 480 202 HOH HOH . E 4 HOH B 81 481 43 HOH HOH . E 4 HOH B 82 482 91 HOH HOH . E 4 HOH B 83 483 64 HOH HOH . E 4 HOH B 84 484 110 HOH HOH . E 4 HOH B 85 485 74 HOH HOH . E 4 HOH B 86 486 53 HOH HOH . E 4 HOH B 87 487 50 HOH HOH . E 4 HOH B 88 488 24 HOH HOH . E 4 HOH B 89 489 113 HOH HOH . E 4 HOH B 90 490 154 HOH HOH . E 4 HOH B 91 491 205 HOH HOH . E 4 HOH B 92 492 46 HOH HOH . E 4 HOH B 93 493 168 HOH HOH . E 4 HOH B 94 494 208 HOH HOH . E 4 HOH B 95 495 181 HOH HOH . E 4 HOH B 96 496 236 HOH HOH . E 4 HOH B 97 497 238 HOH HOH . E 4 HOH B 98 498 131 HOH HOH . E 4 HOH B 99 499 182 HOH HOH . E 4 HOH B 100 500 176 HOH HOH . E 4 HOH B 101 501 58 HOH HOH . E 4 HOH B 102 502 14 HOH HOH . E 4 HOH B 103 503 219 HOH HOH . E 4 HOH B 104 504 225 HOH HOH . E 4 HOH B 105 505 130 HOH HOH . E 4 HOH B 106 506 156 HOH HOH . E 4 HOH B 107 507 94 HOH HOH . E 4 HOH B 108 508 118 HOH HOH . E 4 HOH B 109 509 175 HOH HOH . E 4 HOH B 110 510 214 HOH HOH . E 4 HOH B 111 511 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V8E . . . C 3 31.399 10.863 42.921 0.48 20 1 N1 V8E 2101 A 1 HETATM 2 C C7 V8E . . . C 3 33.484 9.696 43.719 0.48 20 0 C7 V8E 2101 A 1 HETATM 3 C C8 V8E . . . C 3 30.058 10.43 43.462 0.48 20 0 C8 V8E 2101 A 1 HETATM 4 C C9 V8E . . . C 3 29.254 9.937 42.195 0.48 20 0 C9 V8E 2101 A 1 HETATM 5 O O1 V8E . . . C 3 28.118 10.328 42.091 0.48 20 0 O1 V8E 2101 A 1 HETATM 6 C C1 V8E . . . C 3 37.151 12.699 44.774 0.48 20 0 C1 V8E 2101 A 1 HETATM 7 C C5 V8E . . . C 3 32.027 11.893 43.836 0.48 20 0 C5 V8E 2101 A 1 HETATM 8 C C6 V8E . . . C 3 32.311 9.671 42.744 0.48 20 0 C6 V8E 2101 A 1 HETATM 9 C C4 V8E . . . C 3 33.485 12.123 43.416 0.48 20 0 C4 V8E 2101 A 1 HETATM 10 C C3 V8E . . . C 3 35.385 11.004 44.509 0.48 20 0 C3 V8E 2101 A 1 HETATM 11 C C2 V8E . . . C 3 35.72 12.325 45.147 0.48 20 0 C2 V8E 2101 A 1 HETATM 12 O O2 V8E . . . C 3 29.944 9.175 41.454 0.48 20 -1 O2 V8E 2101 A 1 HETATM 13 N N V8E . . . C 3 34.275 10.926 43.659 0.48 20 0 N V8E 2101 A 1 HETATM 14 O O V8E . . . C 3 36.046 10.024 44.709 0.48 20 0 O V8E 2101 A 1 HETATM 15 C C V8E . . . C 3 37.16 14.106 44.239 0.48 20 0 C V8E 2101 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #