data_5STD # _model_server_result.job_id jr2nnv4AVNPyRviHdW8lcQ _model_server_result.datetime_utc '2024-11-05 01:14:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5std # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5STD # _exptl.entry_id 5STD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5STD _cell.length_a 81.62 _cell.length_b 92.29 _cell.length_c 164.02 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5STD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 PISA hexameric 6 software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2,3,4 A,B,C,D,E,F,G,H,I,J,K,L 3 1,5 A,B,C,D,E,F,G,H,I,J,K,L 4 1,2 A,B,C,D,E,F,G,H,I,J,K,L 5 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 81.62 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 81.62 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 81.62 92.29 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 155 A GLU 163 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 A OE1 GLU 155 A GLU 163 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc3 A OE1 GLU 155 A GLU 163 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc4 A OE2 GLU 155 A GLU 163 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc5 A OD1 ASP 156 A ASP 164 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc6 A OD1 ASP 156 A ASP 164 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc7 A OE1 GLU 159 A GLU 167 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc8 A OE1 GLU 159 A GLU 167 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc9 B OE2 GLU 155 B GLU 163 1_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc10 B OE2 GLU 155 B GLU 163 4_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc11 B OD1 ASP 156 B ASP 164 1_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc12 B OD2 ASP 156 B ASP 164 1_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc13 B OD2 ASP 156 B ASP 164 4_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? metalc ? metalc14 B OD1 ASP 156 B ASP 164 4_555 F CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc15 C O ARG 43 C ARG 51 1_555 H CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc16 C OD1 ASP 47 C ASP 55 1_555 H CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc17 C OE1 GLU 51 C GLU 59 2_665 H CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc18 H CA CA . C CA 503 1_555 L O HOH . C HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5STD _atom_sites.fract_transf_matrix[1][1] 0.012252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 501 501 CA AC . E 3 UNN A 1 175 175 UNN UNN . F 2 CA B 1 502 502 CA AC . G 3 UNN B 1 173 173 UNN UNN . H 2 CA C 1 503 503 CA AC . I 3 UNN C 1 174 174 UNN UNN . J 4 HOH A 1 518 518 HOH HOH . J 4 HOH A 2 519 519 HOH HOH . J 4 HOH A 3 520 520 HOH HOH . J 4 HOH A 4 521 521 HOH HOH . J 4 HOH A 5 528 528 HOH HOH . J 4 HOH A 6 529 529 HOH HOH . J 4 HOH A 7 530 530 HOH HOH . J 4 HOH A 8 531 531 HOH HOH . J 4 HOH A 9 532 532 HOH HOH . J 4 HOH A 10 533 533 HOH HOH . J 4 HOH A 11 534 534 HOH HOH . J 4 HOH A 12 535 535 HOH HOH . J 4 HOH A 13 536 536 HOH HOH . J 4 HOH A 14 537 537 HOH HOH . J 4 HOH A 15 538 538 HOH HOH . J 4 HOH A 16 539 539 HOH HOH . J 4 HOH A 17 540 540 HOH HOH . J 4 HOH A 18 541 541 HOH HOH . J 4 HOH A 19 542 542 HOH HOH . J 4 HOH A 20 543 543 HOH HOH . J 4 HOH A 21 544 544 HOH HOH . J 4 HOH A 22 545 545 HOH HOH . J 4 HOH A 23 546 546 HOH HOH . J 4 HOH A 24 547 547 HOH HOH . J 4 HOH A 25 548 548 HOH HOH . J 4 HOH A 26 549 549 HOH HOH . J 4 HOH A 27 550 550 HOH HOH . J 4 HOH A 28 551 551 HOH HOH . J 4 HOH A 29 552 552 HOH HOH . J 4 HOH A 30 553 553 HOH HOH . J 4 HOH A 31 554 554 HOH HOH . J 4 HOH A 32 555 555 HOH HOH . J 4 HOH A 33 556 556 HOH HOH . J 4 HOH A 34 557 557 HOH HOH . J 4 HOH A 35 558 558 HOH HOH . J 4 HOH A 36 559 559 HOH HOH . J 4 HOH A 37 561 561 HOH HOH . J 4 HOH A 38 564 564 HOH HOH . J 4 HOH A 39 566 566 HOH HOH . J 4 HOH A 40 568 568 HOH HOH . J 4 HOH A 41 569 569 HOH HOH . J 4 HOH A 42 571 571 HOH HOH . J 4 HOH A 43 572 572 HOH HOH . J 4 HOH A 44 573 573 HOH HOH . J 4 HOH A 45 574 574 HOH HOH . J 4 HOH A 46 575 575 HOH HOH . J 4 HOH A 47 576 576 HOH HOH . J 4 HOH A 48 577 577 HOH HOH . J 4 HOH A 49 578 578 HOH HOH . J 4 HOH A 50 579 579 HOH HOH . J 4 HOH A 51 580 580 HOH HOH . J 4 HOH A 52 581 581 HOH HOH . J 4 HOH A 53 582 582 HOH HOH . J 4 HOH A 54 627 627 HOH HOH . J 4 HOH A 55 637 637 HOH HOH . J 4 HOH A 56 657 657 HOH HOH . J 4 HOH A 57 665 665 HOH HOH . J 4 HOH A 58 667 667 HOH HOH . J 4 HOH A 59 668 668 HOH HOH . J 4 HOH A 60 669 669 HOH HOH . J 4 HOH A 61 670 670 HOH HOH . J 4 HOH A 62 671 671 HOH HOH . J 4 HOH A 63 672 672 HOH HOH . J 4 HOH A 64 673 673 HOH HOH . J 4 HOH A 65 674 674 HOH HOH . J 4 HOH A 66 675 675 HOH HOH . J 4 HOH A 67 676 676 HOH HOH . J 4 HOH A 68 677 677 HOH HOH . J 4 HOH A 69 678 678 HOH HOH . J 4 HOH A 70 679 679 HOH HOH . J 4 HOH A 71 680 680 HOH HOH . J 4 HOH A 72 681 681 HOH HOH . J 4 HOH A 73 683 683 HOH HOH . J 4 HOH A 74 684 684 HOH HOH . J 4 HOH A 75 685 685 HOH HOH . J 4 HOH A 76 688 688 HOH HOH . J 4 HOH A 77 690 690 HOH HOH . J 4 HOH A 78 691 691 HOH HOH . J 4 HOH A 79 692 692 HOH HOH . J 4 HOH A 80 696 696 HOH HOH . K 4 HOH B 1 507 507 HOH HOH . K 4 HOH B 2 508 508 HOH HOH . K 4 HOH B 3 509 509 HOH HOH . K 4 HOH B 4 523 523 HOH HOH . K 4 HOH B 5 560 560 HOH HOH . K 4 HOH B 6 562 562 HOH HOH . K 4 HOH B 7 563 563 HOH HOH . K 4 HOH B 8 565 565 HOH HOH . K 4 HOH B 9 570 570 HOH HOH . K 4 HOH B 10 583 583 HOH HOH . K 4 HOH B 11 584 584 HOH HOH . K 4 HOH B 12 585 585 HOH HOH . K 4 HOH B 13 586 586 HOH HOH . K 4 HOH B 14 587 587 HOH HOH . K 4 HOH B 15 588 588 HOH HOH . K 4 HOH B 16 589 589 HOH HOH . K 4 HOH B 17 590 590 HOH HOH . K 4 HOH B 18 591 591 HOH HOH . K 4 HOH B 19 592 592 HOH HOH . K 4 HOH B 20 593 593 HOH HOH . K 4 HOH B 21 594 594 HOH HOH . K 4 HOH B 22 595 595 HOH HOH . K 4 HOH B 23 596 596 HOH HOH . K 4 HOH B 24 597 597 HOH HOH . K 4 HOH B 25 598 598 HOH HOH . K 4 HOH B 26 599 599 HOH HOH . K 4 HOH B 27 600 600 HOH HOH . K 4 HOH B 28 601 601 HOH HOH . K 4 HOH B 29 602 602 HOH HOH . K 4 HOH B 30 603 603 HOH HOH . K 4 HOH B 31 604 604 HOH HOH . K 4 HOH B 32 605 605 HOH HOH . K 4 HOH B 33 606 606 HOH HOH . K 4 HOH B 34 607 607 HOH HOH . K 4 HOH B 35 608 608 HOH HOH . K 4 HOH B 36 609 609 HOH HOH . K 4 HOH B 37 610 610 HOH HOH . K 4 HOH B 38 611 611 HOH HOH . K 4 HOH B 39 612 612 HOH HOH . K 4 HOH B 40 613 613 HOH HOH . K 4 HOH B 41 626 626 HOH HOH . K 4 HOH B 42 628 628 HOH HOH . K 4 HOH B 43 629 629 HOH HOH . K 4 HOH B 44 630 630 HOH HOH . K 4 HOH B 45 646 646 HOH HOH . K 4 HOH B 46 654 654 HOH HOH . K 4 HOH B 47 655 655 HOH HOH . K 4 HOH B 48 656 656 HOH HOH . K 4 HOH B 49 658 658 HOH HOH . K 4 HOH B 50 659 659 HOH HOH . K 4 HOH B 51 660 660 HOH HOH . K 4 HOH B 52 661 661 HOH HOH . K 4 HOH B 53 662 662 HOH HOH . K 4 HOH B 54 663 663 HOH HOH . K 4 HOH B 55 664 664 HOH HOH . K 4 HOH B 56 694 694 HOH HOH . K 4 HOH B 57 695 695 HOH HOH . K 4 HOH B 58 697 697 HOH HOH . K 4 HOH B 59 698 698 HOH HOH . K 4 HOH B 60 699 699 HOH HOH . K 4 HOH B 61 700 700 HOH HOH . K 4 HOH B 62 701 701 HOH HOH . K 4 HOH B 63 702 702 HOH HOH . K 4 HOH B 64 703 703 HOH HOH . K 4 HOH B 65 704 704 HOH HOH . K 4 HOH B 66 705 705 HOH HOH . K 4 HOH B 67 706 706 HOH HOH . K 4 HOH B 68 707 707 HOH HOH . K 4 HOH B 69 708 708 HOH HOH . K 4 HOH B 70 709 709 HOH HOH . K 4 HOH B 71 710 710 HOH HOH . K 4 HOH B 72 711 711 HOH HOH . K 4 HOH B 73 712 712 HOH HOH . K 4 HOH B 74 715 715 HOH HOH . K 4 HOH B 75 716 716 HOH HOH . K 4 HOH B 76 720 720 HOH HOH . K 4 HOH B 77 721 721 HOH HOH . L 4 HOH C 1 504 504 HOH HOH . L 4 HOH C 2 505 505 HOH HOH . L 4 HOH C 3 506 506 HOH HOH . L 4 HOH C 4 510 510 HOH HOH . L 4 HOH C 5 511 511 HOH HOH . L 4 HOH C 6 512 512 HOH HOH . L 4 HOH C 7 513 513 HOH HOH . L 4 HOH C 8 514 514 HOH HOH . L 4 HOH C 9 515 515 HOH HOH . L 4 HOH C 10 516 516 HOH HOH . L 4 HOH C 11 517 517 HOH HOH . L 4 HOH C 12 522 522 HOH HOH . L 4 HOH C 13 524 524 HOH HOH . L 4 HOH C 14 525 525 HOH HOH . L 4 HOH C 15 526 526 HOH HOH . L 4 HOH C 16 527 527 HOH HOH . L 4 HOH C 17 567 567 HOH HOH . L 4 HOH C 18 614 614 HOH HOH . L 4 HOH C 19 615 615 HOH HOH . L 4 HOH C 20 616 616 HOH HOH . L 4 HOH C 21 617 617 HOH HOH . L 4 HOH C 22 618 618 HOH HOH . L 4 HOH C 23 619 619 HOH HOH . L 4 HOH C 24 620 620 HOH HOH . L 4 HOH C 25 621 621 HOH HOH . L 4 HOH C 26 622 622 HOH HOH . L 4 HOH C 27 623 623 HOH HOH . L 4 HOH C 28 624 624 HOH HOH . L 4 HOH C 29 625 625 HOH HOH . L 4 HOH C 30 631 631 HOH HOH . L 4 HOH C 31 632 632 HOH HOH . L 4 HOH C 32 633 633 HOH HOH . L 4 HOH C 33 634 634 HOH HOH . L 4 HOH C 34 635 635 HOH HOH . L 4 HOH C 35 636 636 HOH HOH . L 4 HOH C 36 638 638 HOH HOH . L 4 HOH C 37 639 639 HOH HOH . L 4 HOH C 38 640 640 HOH HOH . L 4 HOH C 39 641 641 HOH HOH . L 4 HOH C 40 642 642 HOH HOH . L 4 HOH C 41 643 643 HOH HOH . L 4 HOH C 42 644 644 HOH HOH . L 4 HOH C 43 645 645 HOH HOH . L 4 HOH C 44 647 647 HOH HOH . L 4 HOH C 45 648 648 HOH HOH . L 4 HOH C 46 649 649 HOH HOH . L 4 HOH C 47 650 650 HOH HOH . L 4 HOH C 48 651 651 HOH HOH . L 4 HOH C 49 652 652 HOH HOH . L 4 HOH C 50 653 653 HOH HOH . L 4 HOH C 51 666 666 HOH HOH . L 4 HOH C 52 682 682 HOH HOH . L 4 HOH C 53 686 686 HOH HOH . L 4 HOH C 54 687 687 HOH HOH . L 4 HOH C 55 689 689 HOH HOH . L 4 HOH C 56 693 693 HOH HOH . L 4 HOH C 57 713 713 HOH HOH . L 4 HOH C 58 714 714 HOH HOH . L 4 HOH C 59 717 717 HOH HOH . L 4 HOH C 60 718 718 HOH HOH . L 4 HOH C 61 719 719 HOH HOH . L 4 HOH C 62 722 722 HOH HOH . L 4 HOH C 63 723 723 HOH HOH . L 4 HOH C 64 724 724 HOH HOH . L 4 HOH C 65 725 725 HOH HOH . L 4 HOH C 66 726 726 HOH HOH . L 4 HOH C 67 727 727 HOH HOH . L 4 HOH C 68 728 728 HOH HOH . L 4 HOH C 69 729 729 HOH HOH . L 4 HOH C 70 730 730 HOH HOH . L 4 HOH C 71 731 731 HOH HOH . L 4 HOH C 72 732 732 HOH HOH . L 4 HOH C 73 733 733 HOH HOH . L 4 HOH C 74 734 734 HOH HOH . L 4 HOH C 75 735 735 HOH HOH . L 4 HOH C 76 736 736 HOH HOH . L 4 HOH C 77 737 737 HOH HOH . L 4 HOH C 78 738 738 HOH HOH . L 4 HOH C 79 739 739 HOH HOH . L 4 HOH C 80 740 740 HOH HOH . L 4 HOH C 81 741 741 HOH HOH . L 4 HOH C 82 742 742 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 40.856 _atom_site.Cartn_y -0.108 _atom_site.Cartn_z 33.354 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 20 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 378 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #