data_5STE # _model_server_result.job_id eyR1epy_AD02JWyGMxnVLQ _model_server_result.datetime_utc '2024-11-23 22:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ste # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5STE # _exptl.entry_id 5STE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.912 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]-oxidanyl-oxidanylidene-boron' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.41 _cell.angle_gamma 90 _cell.entry_id 5STE _cell.length_a 88.768 _cell.length_b 81.971 _cell.length_c 93.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5STE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H5 B F3 N2 O2' _chem_comp.formula_weight 192.912 _chem_comp.id VAV _chem_comp.mon_nstd_flag . _chem_comp.name '[2-methyl-5-(trifluoromethyl)pyrazol-3-yl]-oxidanyl-oxidanylidene-boron' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N1 VAV sing 376 n n N N1 VAV sing 377 n y N C2 VAV doub 378 n y F C4 VAV sing 379 n n N1 C VAV sing 380 n y F1 C4 VAV sing 381 n n C4 C2 VAV sing 382 n n C4 F2 VAV sing 383 n n C2 C1 VAV sing 384 n y C C1 VAV doub 385 n y C B VAV sing 386 n n O B VAV sing 387 n n B O1 VAV doub 388 n n C1 H1 VAV sing 389 n n C3 H2 VAV sing 390 n n C3 H3 VAV sing 391 n n C3 H4 VAV sing 392 n n O H5 VAV sing 393 n n # _atom_sites.entry_id 5STE _atom_sites.fract_transf_matrix[1][1] 0.011265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00375 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VAV B 1 401 401 VAV XXX . D 4 HOH A 1 2101 88 HOH HOH . D 4 HOH A 2 2102 117 HOH HOH . D 4 HOH A 3 2103 130 HOH HOH . D 4 HOH A 4 2104 109 HOH HOH . D 4 HOH A 5 2105 95 HOH HOH . D 4 HOH A 6 2106 25 HOH HOH . D 4 HOH A 7 2107 3 HOH HOH . D 4 HOH A 8 2108 134 HOH HOH . D 4 HOH A 9 2109 34 HOH HOH . D 4 HOH A 10 2110 125 HOH HOH . D 4 HOH A 11 2111 124 HOH HOH . D 4 HOH A 12 2112 45 HOH HOH . D 4 HOH A 13 2113 51 HOH HOH . D 4 HOH A 14 2114 29 HOH HOH . D 4 HOH A 15 2115 98 HOH HOH . D 4 HOH A 16 2116 26 HOH HOH . D 4 HOH A 17 2117 89 HOH HOH . D 4 HOH A 18 2118 118 HOH HOH . D 4 HOH A 19 2119 21 HOH HOH . D 4 HOH A 20 2120 13 HOH HOH . D 4 HOH A 21 2121 22 HOH HOH . D 4 HOH A 22 2122 93 HOH HOH . D 4 HOH A 23 2123 8 HOH HOH . D 4 HOH A 24 2124 17 HOH HOH . D 4 HOH A 25 2125 80 HOH HOH . D 4 HOH A 26 2126 81 HOH HOH . D 4 HOH A 27 2127 120 HOH HOH . D 4 HOH A 28 2128 136 HOH HOH . D 4 HOH A 29 2129 75 HOH HOH . D 4 HOH A 30 2130 2 HOH HOH . D 4 HOH A 31 2131 49 HOH HOH . D 4 HOH A 32 2132 83 HOH HOH . D 4 HOH A 33 2133 74 HOH HOH . D 4 HOH A 34 2134 7 HOH HOH . D 4 HOH A 35 2135 121 HOH HOH . D 4 HOH A 36 2136 57 HOH HOH . D 4 HOH A 37 2137 31 HOH HOH . D 4 HOH A 38 2138 113 HOH HOH . D 4 HOH A 39 2139 20 HOH HOH . D 4 HOH A 40 2140 60 HOH HOH . D 4 HOH A 41 2141 97 HOH HOH . D 4 HOH A 42 2142 44 HOH HOH . D 4 HOH A 43 2143 16 HOH HOH . D 4 HOH A 44 2144 56 HOH HOH . D 4 HOH A 45 2145 62 HOH HOH . D 4 HOH A 46 2146 137 HOH HOH . D 4 HOH A 47 2147 90 HOH HOH . D 4 HOH A 48 2148 70 HOH HOH . D 4 HOH A 49 2149 92 HOH HOH . D 4 HOH A 50 2150 58 HOH HOH . D 4 HOH A 51 2151 61 HOH HOH . D 4 HOH A 52 2152 115 HOH HOH . D 4 HOH A 53 2153 112 HOH HOH . D 4 HOH A 54 2154 47 HOH HOH . D 4 HOH A 55 2155 135 HOH HOH . D 4 HOH A 56 2156 48 HOH HOH . D 4 HOH A 57 2157 63 HOH HOH . D 4 HOH A 58 2158 35 HOH HOH . D 4 HOH A 59 2159 114 HOH HOH . D 4 HOH A 60 2160 30 HOH HOH . D 4 HOH A 61 2161 64 HOH HOH . D 4 HOH A 62 2162 87 HOH HOH . D 4 HOH A 63 2163 19 HOH HOH . D 4 HOH A 64 2164 53 HOH HOH . D 4 HOH A 65 2165 37 HOH HOH . D 4 HOH A 66 2166 4 HOH HOH . D 4 HOH A 67 2167 105 HOH HOH . D 4 HOH A 68 2168 110 HOH HOH . D 4 HOH A 69 2169 78 HOH HOH . D 4 HOH A 70 2170 123 HOH HOH . D 4 HOH A 71 2171 116 HOH HOH . D 4 HOH A 72 2172 127 HOH HOH . E 4 HOH B 1 501 71 HOH HOH . E 4 HOH B 2 502 84 HOH HOH . E 4 HOH B 3 503 66 HOH HOH . E 4 HOH B 4 504 69 HOH HOH . E 4 HOH B 5 505 77 HOH HOH . E 4 HOH B 6 506 12 HOH HOH . E 4 HOH B 7 507 52 HOH HOH . E 4 HOH B 8 508 65 HOH HOH . E 4 HOH B 9 509 104 HOH HOH . E 4 HOH B 10 510 38 HOH HOH . E 4 HOH B 11 511 94 HOH HOH . E 4 HOH B 12 512 99 HOH HOH . E 4 HOH B 13 513 119 HOH HOH . E 4 HOH B 14 514 10 HOH HOH . E 4 HOH B 15 515 102 HOH HOH . E 4 HOH B 16 516 18 HOH HOH . E 4 HOH B 17 517 27 HOH HOH . E 4 HOH B 18 518 86 HOH HOH . E 4 HOH B 19 519 103 HOH HOH . E 4 HOH B 20 520 107 HOH HOH . E 4 HOH B 21 521 108 HOH HOH . E 4 HOH B 22 522 129 HOH HOH . E 4 HOH B 23 523 85 HOH HOH . E 4 HOH B 24 524 50 HOH HOH . E 4 HOH B 25 525 132 HOH HOH . E 4 HOH B 26 526 101 HOH HOH . E 4 HOH B 27 527 55 HOH HOH . E 4 HOH B 28 528 131 HOH HOH . E 4 HOH B 29 529 24 HOH HOH . E 4 HOH B 30 530 11 HOH HOH . E 4 HOH B 31 531 126 HOH HOH . E 4 HOH B 32 532 32 HOH HOH . E 4 HOH B 33 533 59 HOH HOH . E 4 HOH B 34 534 6 HOH HOH . E 4 HOH B 35 535 41 HOH HOH . E 4 HOH B 36 536 96 HOH HOH . E 4 HOH B 37 537 73 HOH HOH . E 4 HOH B 38 538 40 HOH HOH . E 4 HOH B 39 539 42 HOH HOH . E 4 HOH B 40 540 15 HOH HOH . E 4 HOH B 41 541 43 HOH HOH . E 4 HOH B 42 542 28 HOH HOH . E 4 HOH B 43 543 67 HOH HOH . E 4 HOH B 44 544 111 HOH HOH . E 4 HOH B 45 545 79 HOH HOH . E 4 HOH B 46 546 72 HOH HOH . E 4 HOH B 47 547 33 HOH HOH . E 4 HOH B 48 548 76 HOH HOH . E 4 HOH B 49 549 36 HOH HOH . E 4 HOH B 50 550 54 HOH HOH . E 4 HOH B 51 551 9 HOH HOH . E 4 HOH B 52 552 46 HOH HOH . E 4 HOH B 53 553 122 HOH HOH . E 4 HOH B 54 554 68 HOH HOH . E 4 HOH B 55 555 23 HOH HOH . E 4 HOH B 56 556 100 HOH HOH . E 4 HOH B 57 557 106 HOH HOH . E 4 HOH B 58 558 14 HOH HOH . E 4 HOH B 59 559 82 HOH HOH . E 4 HOH B 60 560 133 HOH HOH . E 4 HOH B 61 561 39 HOH HOH . E 4 HOH B 62 562 128 HOH HOH . E 4 HOH B 63 563 5 HOH HOH . E 4 HOH B 64 564 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VAV . . . C 3 24.772 17.774 -14.339 0.28 20 0 N1 VAV 401 B 1 HETATM 2 O O1 VAV . . . C 3 25.481 19.245 -11.038 0.28 20 0 O1 VAV 401 B 1 HETATM 3 C C1 VAV . . . C 3 24.766 16.549 -12.463 0.28 20 0 C1 VAV 401 B 1 HETATM 4 C C4 VAV . . . C 3 24.617 14.261 -13.69 0.28 20 0 C4 VAV 401 B 1 HETATM 5 C C3 VAV . . . C 3 24.798 18.905 -15.244 0.28 20 0 C3 VAV 401 B 1 HETATM 6 C C2 VAV . . . C 3 24.722 15.749 -13.645 0.28 20 0 C2 VAV 401 B 1 HETATM 7 F F2 VAV . . . C 3 25.042 13.604 -12.573 0.28 20 0 F2 VAV 401 B 1 HETATM 8 F F VAV . . . C 3 25.277 13.687 -14.715 0.28 20 0 F VAV 401 B 1 HETATM 9 F F1 VAV . . . C 3 23.338 13.856 -13.857 0.28 20 0 F1 VAV 401 B 1 HETATM 10 N N VAV . . . C 3 24.733 16.52 -14.764 0.28 20 0 N VAV 401 B 1 HETATM 11 C C VAV . . . C 3 24.787 17.855 -12.935 0.28 20 0 C VAV 401 B 1 HETATM 12 B B VAV . . . C 3 24.776 19.09 -12.13 0.28 20 0 B VAV 401 B 1 HETATM 13 O O VAV . . . C 3 24.053 20.151 -12.407 0.28 20 0 O VAV 401 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #