data_5STF # _model_server_result.job_id 3R13CKdNwB736mdqZUGBTA _model_server_result.datetime_utc '2024-11-16 07:32:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5stf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5STF # _exptl.entry_id 5STF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 198.219 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,5-diethyl-1-methyl-1,3-diazinane-2,4,6-trione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.39 _cell.angle_gamma 90 _cell.entry_id 5STF _cell.length_a 88.496 _cell.length_b 81.946 _cell.length_c 93.645 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5STF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N2 O3' _chem_comp.formula_weight 198.219 _chem_comp.id VOK _chem_comp.mon_nstd_flag . _chem_comp.name 5,5-diethyl-1-methyl-1,3-diazinane-2,4,6-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 VOK sing 376 n n C7 C2 VOK sing 377 n n O2 C5 VOK doub 378 n n C2 C5 VOK sing 379 n n C2 C1 VOK sing 380 n n C2 C3 VOK sing 381 n n C5 N1 VOK sing 382 n n C1 C VOK sing 383 n n C6 N1 VOK sing 384 n n N1 C4 VOK sing 385 n n C3 O VOK doub 386 n n C3 N VOK sing 387 n n C4 N VOK sing 388 n n C4 O1 VOK doub 389 n n C7 H1 VOK sing 390 n n C7 H2 VOK sing 391 n n C8 H3 VOK sing 392 n n C8 H4 VOK sing 393 n n C8 H5 VOK sing 394 n n C1 H6 VOK sing 395 n n C1 H7 VOK sing 396 n n C6 H8 VOK sing 397 n n C6 H9 VOK sing 398 n n C6 H10 VOK sing 399 n n C H11 VOK sing 400 n n C H12 VOK sing 401 n n C H13 VOK sing 402 n n N H14 VOK sing 403 n n # _atom_sites.entry_id 5STF _atom_sites.fract_transf_matrix[1][1] 0.0113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003757 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VOK B 1 401 401 VOK XXX . D 4 HOH A 1 2101 89 HOH HOH . D 4 HOH A 2 2102 94 HOH HOH . D 4 HOH A 3 2103 160 HOH HOH . D 4 HOH A 4 2104 141 HOH HOH . D 4 HOH A 5 2105 151 HOH HOH . D 4 HOH A 6 2106 109 HOH HOH . D 4 HOH A 7 2107 164 HOH HOH . D 4 HOH A 8 2108 163 HOH HOH . D 4 HOH A 9 2109 11 HOH HOH . D 4 HOH A 10 2110 32 HOH HOH . D 4 HOH A 11 2111 130 HOH HOH . D 4 HOH A 12 2112 167 HOH HOH . D 4 HOH A 13 2113 3 HOH HOH . D 4 HOH A 14 2114 154 HOH HOH . D 4 HOH A 15 2115 49 HOH HOH . D 4 HOH A 16 2116 5 HOH HOH . D 4 HOH A 17 2117 17 HOH HOH . D 4 HOH A 18 2118 66 HOH HOH . D 4 HOH A 19 2119 133 HOH HOH . D 4 HOH A 20 2120 4 HOH HOH . D 4 HOH A 21 2121 27 HOH HOH . D 4 HOH A 22 2122 75 HOH HOH . D 4 HOH A 23 2123 165 HOH HOH . D 4 HOH A 24 2124 16 HOH HOH . D 4 HOH A 25 2125 13 HOH HOH . D 4 HOH A 26 2126 70 HOH HOH . D 4 HOH A 27 2127 140 HOH HOH . D 4 HOH A 28 2128 162 HOH HOH . D 4 HOH A 29 2129 67 HOH HOH . D 4 HOH A 30 2130 28 HOH HOH . D 4 HOH A 31 2131 40 HOH HOH . D 4 HOH A 32 2132 42 HOH HOH . D 4 HOH A 33 2133 48 HOH HOH . D 4 HOH A 34 2134 41 HOH HOH . D 4 HOH A 35 2135 159 HOH HOH . D 4 HOH A 36 2136 73 HOH HOH . D 4 HOH A 37 2137 153 HOH HOH . D 4 HOH A 38 2138 166 HOH HOH . D 4 HOH A 39 2139 82 HOH HOH . D 4 HOH A 40 2140 36 HOH HOH . D 4 HOH A 41 2141 93 HOH HOH . D 4 HOH A 42 2142 86 HOH HOH . D 4 HOH A 43 2143 14 HOH HOH . D 4 HOH A 44 2144 101 HOH HOH . D 4 HOH A 45 2145 52 HOH HOH . D 4 HOH A 46 2146 19 HOH HOH . D 4 HOH A 47 2147 119 HOH HOH . D 4 HOH A 48 2148 77 HOH HOH . D 4 HOH A 49 2149 74 HOH HOH . D 4 HOH A 50 2150 47 HOH HOH . D 4 HOH A 51 2151 9 HOH HOH . D 4 HOH A 52 2152 121 HOH HOH . D 4 HOH A 53 2153 65 HOH HOH . D 4 HOH A 54 2154 131 HOH HOH . D 4 HOH A 55 2155 58 HOH HOH . D 4 HOH A 56 2156 83 HOH HOH . D 4 HOH A 57 2157 105 HOH HOH . D 4 HOH A 58 2158 55 HOH HOH . D 4 HOH A 59 2159 81 HOH HOH . D 4 HOH A 60 2160 88 HOH HOH . D 4 HOH A 61 2161 127 HOH HOH . D 4 HOH A 62 2162 7 HOH HOH . D 4 HOH A 63 2163 43 HOH HOH . D 4 HOH A 64 2164 112 HOH HOH . D 4 HOH A 65 2165 56 HOH HOH . D 4 HOH A 66 2166 107 HOH HOH . D 4 HOH A 67 2167 115 HOH HOH . D 4 HOH A 68 2168 129 HOH HOH . D 4 HOH A 69 2169 99 HOH HOH . D 4 HOH A 70 2170 18 HOH HOH . D 4 HOH A 71 2171 118 HOH HOH . D 4 HOH A 72 2172 142 HOH HOH . D 4 HOH A 73 2173 80 HOH HOH . D 4 HOH A 74 2174 146 HOH HOH . D 4 HOH A 75 2175 38 HOH HOH . D 4 HOH A 76 2176 68 HOH HOH . D 4 HOH A 77 2177 136 HOH HOH . D 4 HOH A 78 2178 104 HOH HOH . D 4 HOH A 79 2179 125 HOH HOH . D 4 HOH A 80 2180 78 HOH HOH . D 4 HOH A 81 2181 143 HOH HOH . D 4 HOH A 82 2182 98 HOH HOH . D 4 HOH A 83 2183 155 HOH HOH . D 4 HOH A 84 2184 122 HOH HOH . D 4 HOH A 85 2185 158 HOH HOH . D 4 HOH A 86 2186 149 HOH HOH . D 4 HOH A 87 2187 156 HOH HOH . D 4 HOH A 88 2188 138 HOH HOH . E 4 HOH B 1 501 123 HOH HOH . E 4 HOH B 2 502 50 HOH HOH . E 4 HOH B 3 503 72 HOH HOH . E 4 HOH B 4 504 117 HOH HOH . E 4 HOH B 5 505 69 HOH HOH . E 4 HOH B 6 506 31 HOH HOH . E 4 HOH B 7 507 15 HOH HOH . E 4 HOH B 8 508 148 HOH HOH . E 4 HOH B 9 509 96 HOH HOH . E 4 HOH B 10 510 61 HOH HOH . E 4 HOH B 11 511 113 HOH HOH . E 4 HOH B 12 512 51 HOH HOH . E 4 HOH B 13 513 2 HOH HOH . E 4 HOH B 14 514 33 HOH HOH . E 4 HOH B 15 515 92 HOH HOH . E 4 HOH B 16 516 111 HOH HOH . E 4 HOH B 17 517 161 HOH HOH . E 4 HOH B 18 518 85 HOH HOH . E 4 HOH B 19 519 168 HOH HOH . E 4 HOH B 20 520 21 HOH HOH . E 4 HOH B 21 521 91 HOH HOH . E 4 HOH B 22 522 110 HOH HOH . E 4 HOH B 23 523 100 HOH HOH . E 4 HOH B 24 524 120 HOH HOH . E 4 HOH B 25 525 106 HOH HOH . E 4 HOH B 26 526 139 HOH HOH . E 4 HOH B 27 527 71 HOH HOH . E 4 HOH B 28 528 63 HOH HOH . E 4 HOH B 29 529 53 HOH HOH . E 4 HOH B 30 530 20 HOH HOH . E 4 HOH B 31 531 152 HOH HOH . E 4 HOH B 32 532 95 HOH HOH . E 4 HOH B 33 533 30 HOH HOH . E 4 HOH B 34 534 24 HOH HOH . E 4 HOH B 35 535 54 HOH HOH . E 4 HOH B 36 536 22 HOH HOH . E 4 HOH B 37 537 108 HOH HOH . E 4 HOH B 38 538 25 HOH HOH . E 4 HOH B 39 539 34 HOH HOH . E 4 HOH B 40 540 23 HOH HOH . E 4 HOH B 41 541 59 HOH HOH . E 4 HOH B 42 542 114 HOH HOH . E 4 HOH B 43 543 134 HOH HOH . E 4 HOH B 44 544 57 HOH HOH . E 4 HOH B 45 545 60 HOH HOH . E 4 HOH B 46 546 103 HOH HOH . E 4 HOH B 47 547 147 HOH HOH . E 4 HOH B 48 548 132 HOH HOH . E 4 HOH B 49 549 87 HOH HOH . E 4 HOH B 50 550 128 HOH HOH . E 4 HOH B 51 551 8 HOH HOH . E 4 HOH B 52 552 12 HOH HOH . E 4 HOH B 53 553 26 HOH HOH . E 4 HOH B 54 554 35 HOH HOH . E 4 HOH B 55 555 44 HOH HOH . E 4 HOH B 56 556 84 HOH HOH . E 4 HOH B 57 557 10 HOH HOH . E 4 HOH B 58 558 124 HOH HOH . E 4 HOH B 59 559 116 HOH HOH . E 4 HOH B 60 560 37 HOH HOH . E 4 HOH B 61 561 64 HOH HOH . E 4 HOH B 62 562 150 HOH HOH . E 4 HOH B 63 563 29 HOH HOH . E 4 HOH B 64 564 135 HOH HOH . E 4 HOH B 65 565 90 HOH HOH . E 4 HOH B 66 566 102 HOH HOH . E 4 HOH B 67 567 46 HOH HOH . E 4 HOH B 68 568 144 HOH HOH . E 4 HOH B 69 569 145 HOH HOH . E 4 HOH B 70 570 97 HOH HOH . E 4 HOH B 71 571 45 HOH HOH . E 4 HOH B 72 572 62 HOH HOH . E 4 HOH B 73 573 39 HOH HOH . E 4 HOH B 74 574 76 HOH HOH . E 4 HOH B 75 575 6 HOH HOH . E 4 HOH B 76 576 126 HOH HOH . E 4 HOH B 77 577 79 HOH HOH . E 4 HOH B 78 578 157 HOH HOH . E 4 HOH B 79 579 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VOK . . . C 3 -1.098 13.062 -35.357 0.36 20 0 N1 VOK 401 B 1 HETATM 2 C C7 VOK . . . C 3 -3.276 14.884 -37.451 0.36 20 0 C7 VOK 401 B 1 HETATM 3 C C8 VOK . . . C 3 -4.476 13.989 -37.75 0.36 20 0 C8 VOK 401 B 1 HETATM 4 O O1 VOK . . . C 3 -1.806 11.18 -34.222 0.36 20 0 O1 VOK 401 B 1 HETATM 5 C C1 VOK . . . C 3 -2.759 16.216 -35.428 0.36 20 0 C1 VOK 401 B 1 HETATM 6 C C5 VOK . . . C 3 -1.382 14.276 -35.98 0.36 20 0 C5 VOK 401 B 1 HETATM 7 C C6 VOK . . . C 3 0.298 12.602 -35.401 0.36 20 0 C6 VOK 401 B 1 HETATM 8 C C4 VOK . . . C 3 -2.061 12.265 -34.711 0.36 20 0 C4 VOK 401 B 1 HETATM 9 C C3 VOK . . . C 3 -3.77 13.948 -35.214 0.36 20 0 C3 VOK 401 B 1 HETATM 10 C C2 VOK . . . C 3 -2.797 14.792 -35.982 0.36 20 0 C2 VOK 401 B 1 HETATM 11 O O2 VOK . . . C 3 -0.467 14.876 -36.5 0.36 20 0 O2 VOK 401 B 1 HETATM 12 C C VOK . . . C 3 -3.385 16.286 -34.051 0.36 20 0 C VOK 401 B 1 HETATM 13 N N VOK . . . C 3 -3.363 12.736 -34.655 0.36 20 0 N VOK 401 B 1 HETATM 14 O O VOK . . . C 3 -4.906 14.289 -35.054 0.36 20 0 O VOK 401 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #