data_5STY # _model_server_result.job_id fGCWrZzR2X8MSSNUcV-_Ug _model_server_result.datetime_utc '2024-11-16 07:39:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5sty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5STY # _exptl.entry_id 5STY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.261 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (3S)-3-(methoxycarbamoyl)piperidine-1-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.47 _cell.angle_gamma 90 _cell.entry_id 5STY _cell.length_a 88.833 _cell.length_b 81.682 _cell.length_c 93.691 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5STY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H18 N2 O4' _chem_comp.formula_weight 230.261 _chem_comp.id V9I _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (3S)-3-(methoxycarbamoyl)piperidine-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O3 V9I sing 358 n n O3 N1 V9I sing 359 n n N1 C8 V9I sing 360 n n C5 C6 V9I sing 361 n n C5 C4 V9I sing 362 n n C8 C6 V9I sing 363 n n C8 O2 V9I doub 364 n n C6 C7 V9I sing 365 n n C4 C3 V9I sing 366 n n C7 N V9I sing 367 n n C3 N V9I sing 368 n n N C2 V9I sing 369 n n C2 O1 V9I doub 370 n n C2 O V9I sing 371 n n O C1 V9I sing 372 n n C1 C V9I sing 373 n n N1 H14 V9I sing 374 n n C7 H13 V9I sing 375 n n C7 H12 V9I sing 376 n n C9 H17 V9I sing 377 n n C9 H16 V9I sing 378 n n C9 H15 V9I sing 379 n n C1 H4 V9I sing 380 n n C1 H5 V9I sing 381 n n C5 H11 V9I sing 382 n n C5 H10 V9I sing 383 n n C6 H V9I sing 384 n n C4 H9 V9I sing 385 n n C4 H8 V9I sing 386 n n C3 H6 V9I sing 387 n n C3 H7 V9I sing 388 n n C H2 V9I sing 389 n n C H3 V9I sing 390 n n C H1 V9I sing 391 n n # _atom_sites.entry_id 5STY _atom_sites.fract_transf_matrix[1][1] 0.011257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012243 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V9I B 1 401 401 V9I XXX . D 4 HOH A 1 2101 126 HOH HOH . D 4 HOH A 2 2102 109 HOH HOH . D 4 HOH A 3 2103 80 HOH HOH . D 4 HOH A 4 2104 97 HOH HOH . D 4 HOH A 5 2105 104 HOH HOH . D 4 HOH A 6 2106 127 HOH HOH . D 4 HOH A 7 2107 131 HOH HOH . D 4 HOH A 8 2108 96 HOH HOH . D 4 HOH A 9 2109 2 HOH HOH . D 4 HOH A 10 2110 22 HOH HOH . D 4 HOH A 11 2111 54 HOH HOH . D 4 HOH A 12 2112 98 HOH HOH . D 4 HOH A 13 2113 110 HOH HOH . D 4 HOH A 14 2114 26 HOH HOH . D 4 HOH A 15 2115 11 HOH HOH . D 4 HOH A 16 2116 91 HOH HOH . D 4 HOH A 17 2117 103 HOH HOH . D 4 HOH A 18 2118 30 HOH HOH . D 4 HOH A 19 2119 13 HOH HOH . D 4 HOH A 20 2120 74 HOH HOH . D 4 HOH A 21 2121 21 HOH HOH . D 4 HOH A 22 2122 51 HOH HOH . D 4 HOH A 23 2123 95 HOH HOH . D 4 HOH A 24 2124 124 HOH HOH . D 4 HOH A 25 2125 79 HOH HOH . D 4 HOH A 26 2126 82 HOH HOH . D 4 HOH A 27 2127 81 HOH HOH . D 4 HOH A 28 2128 69 HOH HOH . D 4 HOH A 29 2129 20 HOH HOH . D 4 HOH A 30 2130 6 HOH HOH . D 4 HOH A 31 2131 46 HOH HOH . D 4 HOH A 32 2132 89 HOH HOH . D 4 HOH A 33 2133 120 HOH HOH . D 4 HOH A 34 2134 106 HOH HOH . D 4 HOH A 35 2135 52 HOH HOH . D 4 HOH A 36 2136 29 HOH HOH . D 4 HOH A 37 2137 88 HOH HOH . D 4 HOH A 38 2138 36 HOH HOH . D 4 HOH A 39 2139 111 HOH HOH . D 4 HOH A 40 2140 73 HOH HOH . D 4 HOH A 41 2141 14 HOH HOH . D 4 HOH A 42 2142 65 HOH HOH . D 4 HOH A 43 2143 93 HOH HOH . D 4 HOH A 44 2144 57 HOH HOH . D 4 HOH A 45 2145 75 HOH HOH . D 4 HOH A 46 2146 114 HOH HOH . D 4 HOH A 47 2147 78 HOH HOH . D 4 HOH A 48 2148 47 HOH HOH . D 4 HOH A 49 2149 71 HOH HOH . D 4 HOH A 50 2150 5 HOH HOH . D 4 HOH A 51 2151 35 HOH HOH . D 4 HOH A 52 2152 8 HOH HOH . D 4 HOH A 53 2153 102 HOH HOH . D 4 HOH A 54 2154 92 HOH HOH . D 4 HOH A 55 2155 34 HOH HOH . D 4 HOH A 56 2156 116 HOH HOH . D 4 HOH A 57 2157 17 HOH HOH . D 4 HOH A 58 2158 12 HOH HOH . D 4 HOH A 59 2159 10 HOH HOH . D 4 HOH A 60 2160 83 HOH HOH . D 4 HOH A 61 2161 45 HOH HOH . D 4 HOH A 62 2162 117 HOH HOH . D 4 HOH A 63 2163 37 HOH HOH . D 4 HOH A 64 2164 84 HOH HOH . D 4 HOH A 65 2165 122 HOH HOH . D 4 HOH A 66 2166 118 HOH HOH . D 4 HOH A 67 2167 90 HOH HOH . D 4 HOH A 68 2168 61 HOH HOH . E 4 HOH B 1 501 119 HOH HOH . E 4 HOH B 2 502 40 HOH HOH . E 4 HOH B 3 503 3 HOH HOH . E 4 HOH B 4 504 32 HOH HOH . E 4 HOH B 5 505 41 HOH HOH . E 4 HOH B 6 506 38 HOH HOH . E 4 HOH B 7 507 76 HOH HOH . E 4 HOH B 8 508 86 HOH HOH . E 4 HOH B 9 509 130 HOH HOH . E 4 HOH B 10 510 63 HOH HOH . E 4 HOH B 11 511 105 HOH HOH . E 4 HOH B 12 512 56 HOH HOH . E 4 HOH B 13 513 100 HOH HOH . E 4 HOH B 14 514 68 HOH HOH . E 4 HOH B 15 515 16 HOH HOH . E 4 HOH B 16 516 113 HOH HOH . E 4 HOH B 17 517 24 HOH HOH . E 4 HOH B 18 518 70 HOH HOH . E 4 HOH B 19 519 60 HOH HOH . E 4 HOH B 20 520 128 HOH HOH . E 4 HOH B 21 521 7 HOH HOH . E 4 HOH B 22 522 125 HOH HOH . E 4 HOH B 23 523 25 HOH HOH . E 4 HOH B 24 524 129 HOH HOH . E 4 HOH B 25 525 15 HOH HOH . E 4 HOH B 26 526 33 HOH HOH . E 4 HOH B 27 527 107 HOH HOH . E 4 HOH B 28 528 28 HOH HOH . E 4 HOH B 29 529 44 HOH HOH . E 4 HOH B 30 530 112 HOH HOH . E 4 HOH B 31 531 99 HOH HOH . E 4 HOH B 32 532 50 HOH HOH . E 4 HOH B 33 533 115 HOH HOH . E 4 HOH B 34 534 18 HOH HOH . E 4 HOH B 35 535 43 HOH HOH . E 4 HOH B 36 536 108 HOH HOH . E 4 HOH B 37 537 49 HOH HOH . E 4 HOH B 38 538 39 HOH HOH . E 4 HOH B 39 539 59 HOH HOH . E 4 HOH B 40 540 53 HOH HOH . E 4 HOH B 41 541 87 HOH HOH . E 4 HOH B 42 542 62 HOH HOH . E 4 HOH B 43 543 101 HOH HOH . E 4 HOH B 44 544 58 HOH HOH . E 4 HOH B 45 545 27 HOH HOH . E 4 HOH B 46 546 77 HOH HOH . E 4 HOH B 47 547 19 HOH HOH . E 4 HOH B 48 548 94 HOH HOH . E 4 HOH B 49 549 72 HOH HOH . E 4 HOH B 50 550 48 HOH HOH . E 4 HOH B 51 551 23 HOH HOH . E 4 HOH B 52 552 31 HOH HOH . E 4 HOH B 53 553 66 HOH HOH . E 4 HOH B 54 554 85 HOH HOH . E 4 HOH B 55 555 9 HOH HOH . E 4 HOH B 56 556 132 HOH HOH . E 4 HOH B 57 557 4 HOH HOH . E 4 HOH B 58 558 42 HOH HOH . E 4 HOH B 59 559 123 HOH HOH . E 4 HOH B 60 560 55 HOH HOH . E 4 HOH B 61 561 121 HOH HOH . E 4 HOH B 62 562 64 HOH HOH . E 4 HOH B 63 563 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V9I . . . C 3 16.512 11.654 -42.209 1 30 0 N1 V9I 401 B 1 HETATM 2 C C7 V9I . . . C 3 18.397 12.096 -39.275 1 30 0 C7 V9I 401 B 1 HETATM 3 C C8 V9I . . . C 3 16.934 12.458 -41.238 1 30 0 C8 V9I 401 B 1 HETATM 4 C C9 V9I . . . C 3 14.356 12.627 -42.524 1 30 0 C9 V9I 401 B 1 HETATM 5 O O1 V9I . . . C 3 21.43 10.503 -38.342 1 30 0 O1 V9I 401 B 1 HETATM 6 C C1 V9I . . . C 3 19.734 8.507 -37.952 1 30 0 C1 V9I 401 B 1 HETATM 7 C C5 V9I . . . C 3 19.259 13.405 -41.253 1 30 0 C5 V9I 401 B 1 HETATM 8 C C6 V9I . . . C 3 18.369 12.242 -40.798 1 30 0 C6 V9I 401 B 1 HETATM 9 C C4 V9I . . . C 3 20.654 13.325 -40.647 1 30 0 C4 V9I 401 B 1 HETATM 10 C C3 V9I . . . C 3 20.595 13.111 -39.147 1 30 0 C3 V9I 401 B 1 HETATM 11 O O3 V9I . . . C 3 15.149 11.438 -42.472 1 30 0 O3 V9I 401 B 1 HETATM 12 C C2 V9I . . . C 3 20.267 10.741 -38.453 1 30 0 C2 V9I 401 B 1 HETATM 13 O O2 V9I . . . C 3 16.233 13.332 -40.739 1 30 0 O2 V9I 401 B 1 HETATM 14 N N V9I . . . C 3 19.774 11.941 -38.816 1 30 0 N V9I 401 B 1 HETATM 15 O O V9I . . . C 3 19.301 9.863 -38.224 1 30 0 O V9I 401 B 1 HETATM 16 C C V9I . . . C 3 19.658 8.281 -36.572 1 30 0 C V9I 401 B 1 HETATM 17 H H14 V9I . . . C 3 17.069 10.954 -42.688 1 30 0 H14 V9I 401 B 1 HETATM 18 H H13 V9I . . . C 3 17.776 11.255 -38.972 1 30 0 H13 V9I 401 B 1 HETATM 19 H H12 V9I . . . C 3 17.963 12.96 -38.774 1 30 0 H12 V9I 401 B 1 HETATM 20 H H17 V9I . . . C 3 13.44 12.508 -43.101 1 30 0 H17 V9I 401 B 1 HETATM 21 H H16 V9I . . . C 3 15.011 13.33 -43.036 1 30 0 H16 V9I 401 B 1 HETATM 22 H H15 V9I . . . C 3 14.117 13.002 -41.53 1 30 0 H15 V9I 401 B 1 HETATM 23 H H4 V9I . . . C 3 20.743 8.339 -38.326 1 30 0 H4 V9I 401 B 1 HETATM 24 H H5 V9I . . . C 3 19.076 7.835 -38.502 1 30 0 H5 V9I 401 B 1 HETATM 25 H H11 V9I . . . C 3 18.798 14.361 -41.01 1 30 0 H11 V9I 401 B 1 HETATM 26 H H10 V9I . . . C 3 19.328 13.402 -42.34 1 30 0 H10 V9I 401 B 1 HETATM 27 H H V9I . . . C 3 18.729 11.316 -41.245 1 30 0 H V9I 401 B 1 HETATM 28 H H9 V9I . . . C 3 21.196 14.241 -40.877 1 30 0 H9 V9I 401 B 1 HETATM 29 H H8 V9I . . . C 3 21.229 12.537 -41.131 1 30 0 H8 V9I 401 B 1 HETATM 30 H H6 V9I . . . C 3 20.164 13.99 -38.671 1 30 0 H6 V9I 401 B 1 HETATM 31 H H7 V9I . . . C 3 21.603 13.06 -38.738 1 30 0 H7 V9I 401 B 1 HETATM 32 H H2 V9I . . . C 3 20.282 8.962 -35.994 1 30 0 H2 V9I 401 B 1 HETATM 33 H H3 V9I . . . C 3 19.971 7.267 -36.328 1 30 0 H3 V9I 401 B 1 HETATM 34 H H1 V9I . . . C 3 18.647 8.397 -36.185 1 30 0 H1 V9I 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #